BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645499|ref|NP_207674.1| hypothetical protein
[Helicobacter pylori 26695]
(140 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 34 0.007
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 34 0.007
pdb|1K2H|A Chain A, Three-Dimensional Solution Structure Of... 27 1.1
pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Bind... 27 1.1
pdb|1DS6|B Chain B, Crystal Structure Of A Rac-Rhogdi Complex 26 1.5
pdb|1AK1| Ferrochelatase From Bacillus Subtilis >gi|75465... 26 1.9
pdb|1DOZ|A Chain A, Crystal Structure Of Ferrochelatase 26 1.9
pdb|1C9E|A Chain A, Structure Of Ferrochelatase With Copper... 26 1.9
pdb|1QSD|A Chain A, Rbl2p, Beta-Tubulin Binding Post-Chaper... 26 1.9
pdb|1K6Y|B Chain B, Crystal Structure Of A Two-Domain Fragm... 26 1.9
pdb|1IJE|B Chain B, Nucleotide Exchange Intermediates In Th... 25 3.3
pdb|1H6K|C Chain C, Nuclear Cap Binding Complex >gi|1598838... 25 3.3
pdb|1M1J|C Chain C, Crystal Structure Of Native Chicken Fib... 25 3.3
pdb|2HDH|A Chain A, Biochemical Characterization And Struct... 25 3.3
pdb|1F60|B Chain B, Crystal Structure Of The Yeast Elongati... 25 3.3
pdb|1EI3|C Chain C, Crystal Structure Of Native Chicken Fib... 25 3.3
pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyr... 25 3.3
pdb|1FI5|A Chain A, Nmr Structure Of The C Terminal Domain ... 25 4.3
pdb|1IH0|A Chain A, Structure Of The C-Domain Of Human Card... 25 4.3
pdb|1AJ4| Structure Of Calcium-Saturated Cardiac Troponin... 25 4.3
pdb|3CTN| Structure Of Calcium-Saturated Cardiac Troponin... 25 4.3
pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated ... 25 4.3
pdb|3HAD|A Chain A, Biochemical Characterization And Struct... 24 5.7
pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl C... 24 5.7
pdb|1CEV|A Chain A, Arginase From Bacillus Caldovelox, Nati... 24 5.7
pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mu... 24 5.7
pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Compl... 24 5.7
pdb|1EX4|A Chain A, Hiv-1 Integrase Catalytic Core And C-Te... 24 7.4
pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc T... 24 7.4
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 24 7.4
pdb|1QFF|A Chain A, E. Coli Ferric Hydroxamate Uptake Recep... 24 7.4
pdb|1FCP|A Chain A, Ferric Hydroxamate Uptake Receptor (Fhu... 24 7.4
pdb|1GH8|A Chain A, Solution Structure Of The Archaeal Tran... 23 9.7
pdb|1M9Z|A Chain A, Crystal Structure Of Human Tgf-Beta Typ... 23 9.7
pdb|1KTZ|B Chain B, Crystal Structure Of The Human Tgf-Beta... 23 9.7
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 33.9 bits (76), Expect = 0.007
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 20/109 (18%)
Query: 37 IETRLHKNKLTIISKTDSIEIQDIQFNR-----ENCSHTY--TSKDLEKIQKDLEELEEG 89
IE+R K++ + +EIQ+IQ E+ Y ++ L I+ DLE EE
Sbjct: 130 IESRAQKDE-------EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEER 182
Query: 90 VPELFE----ELERDEESIAKNKKTIQEYQNKIANFQ-KYYKDIKDIDD 133
EL E ELE + +++ N K+++ K + + KY ++IK + D
Sbjct: 183 A-ELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSD 230
Score = 25.8 bits (55), Expect = 1.9
Identities = 14/81 (17%), Positives = 39/81 (47%)
Query: 48 IISKTDSIEIQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKN 107
+ S I++ + + +R + LE+ +K +E E G+ + ++DEE +
Sbjct: 85 VASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQ 144
Query: 108 KKTIQEYQNKIANFQKYYKDI 128
+ ++E ++ + + Y+++
Sbjct: 145 EIQLKEAKHIAEDADRKYEEV 165
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 33.9 bits (76), Expect = 0.007
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 20/109 (18%)
Query: 37 IETRLHKNKLTIISKTDSIEIQDIQFNR-----ENCSHTY--TSKDLEKIQKDLEELEEG 89
IE+R K++ + +EIQ+IQ E+ Y ++ L I+ DLE EE
Sbjct: 130 IESRAQKDE-------EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEER 182
Query: 90 VPELFE----ELERDEESIAKNKKTIQEYQNKIANFQ-KYYKDIKDIDD 133
EL E ELE + +++ N K+++ K + + KY ++IK + D
Sbjct: 183 A-ELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSD 230
Score = 25.4 bits (54), Expect = 2.5
Identities = 11/53 (20%), Positives = 29/53 (53%)
Query: 76 LEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDI 128
LE+ +K +E E G+ + ++DEE + + ++E ++ + + Y+++
Sbjct: 113 LEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEV 165
>pdb|1K2H|A Chain A, Three-Dimensional Solution Structure Of Apo-S100a1.
pdb|1K2H|B Chain B, Three-Dimensional Solution Structure Of Apo-S100a1
Length = 93
Score = 26.6 bits (57), Expect = 1.1
Identities = 14/62 (22%), Positives = 35/62 (55%), Gaps = 3/62 (4%)
Query: 66 NCSHTYTSKDLEKIQ---KDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQ 122
N H ++ K+ +K + K+L++L + F ++++D +++ K K + E + +FQ
Sbjct: 13 NVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQ 72
Query: 123 KY 124
++
Sbjct: 73 EF 74
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 26.6 bits (57), Expect = 1.1
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 73 SKDLEKIQKDLEELEEGVPELFEELERDEESIAKNK-----KTIQEYQNKIANFQKYYKD 127
+K + KIQK+LEE +E + + D++ + K + I+ Q K+ + Q K+
Sbjct: 630 NKHVLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKN 689
Query: 128 I 128
+
Sbjct: 690 L 690
>pdb|1DS6|B Chain B, Crystal Structure Of A Rac-Rhogdi Complex
Length = 180
Score = 26.2 bits (56), Expect = 1.5
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 8/32 (25%)
Query: 80 QKDLEELEEGVPELFEELERDEESIAKNKKTI 111
QK L+EL+E +++D+ES+ K KKT+
Sbjct: 8 QKSLKELQE--------MDKDDESLIKYKKTL 31
>pdb|1AK1| Ferrochelatase From Bacillus Subtilis
pdb|1C1H|A Chain A, Crystal Structure Of Bacillus Subtilis Ferrochelatase In
Complex With N-Methyl Mesoporphyrin
Length = 310
Score = 25.8 bits (55), Expect = 1.9
Identities = 12/60 (20%), Positives = 29/60 (48%)
Query: 71 YTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDIKD 130
Y +D+E+ + + PE+ ++L+ E+I Q + + N +++ +I+D
Sbjct: 17 YKEEDIERYYTHIRRGRKPEPEMLQDLKDRYEAIGGISPLAQITEQQAHNLEQHLNEIQD 76
>pdb|1DOZ|A Chain A, Crystal Structure Of Ferrochelatase
Length = 309
Score = 25.8 bits (55), Expect = 1.9
Identities = 12/60 (20%), Positives = 29/60 (48%)
Query: 71 YTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDIKD 130
Y +D+E+ + + PE+ ++L+ E+I Q + + N +++ +I+D
Sbjct: 16 YKEEDIERYYTHIRRGRKPEPEMLQDLKDRYEAIGGISPLAQITEQQAHNLEQHLNEIQD 75
>pdb|1C9E|A Chain A, Structure Of Ferrochelatase With Copper(Ii) N-
Methylmesoporphyrin Complex Bound At The Active Site
Length = 306
Score = 25.8 bits (55), Expect = 1.9
Identities = 12/60 (20%), Positives = 29/60 (48%)
Query: 71 YTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDIKD 130
Y +D+E+ + + PE+ ++L+ E+I Q + + N +++ +I+D
Sbjct: 13 YKEEDIERYYTHIRRGRKPEPEMLQDLKDRYEAIGGISPLAQITEQQAHNLEQHLNEIQD 72
>pdb|1QSD|A Chain A, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
pdb|1QSD|B Chain B, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
Length = 106
Score = 25.8 bits (55), Expect = 1.9
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 14/59 (23%)
Query: 75 DLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDIKDIDD 133
DL+K ++ L++ + +P L+E+ I+E++ + F K Y+ +D+ D
Sbjct: 47 DLKKQEEVLDDTKRLLPTLYEK--------------IREFKEDLEQFLKTYQGTEDVSD 91
>pdb|1K6Y|B Chain B, Crystal Structure Of A Two-Domain Fragment Of Hiv-1
Integrase
pdb|1K6Y|A Chain A, Crystal Structure Of A Two-Domain Fragment Of Hiv-1
Integrase
pdb|1K6Y|C Chain C, Crystal Structure Of A Two-Domain Fragment Of Hiv-1
Integrase
pdb|1K6Y|D Chain D, Crystal Structure Of A Two-Domain Fragment Of Hiv-1
Integrase
Length = 288
Score = 25.8 bits (55), Expect = 1.9
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 109 KTIQEYQNKIANFQKYYKDIKD 130
K +Q+ KI NF+ YY+D +D
Sbjct: 211 KELQKQITKIQNFRVYYRDSRD 232
>pdb|1IJE|B Chain B, Nucleotide Exchange Intermediates In The Eef1a-Eef1ba
Complex
pdb|1IJF|B Chain B, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba
Complex
Length = 90
Score = 25.0 bits (53), Expect = 3.3
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 30 GKDDAIPIETRLHKNKLTIISKTDSIEIQDIQFNRENCSHTYTSKDLEKIQK 81
G IPI + K ++ + + D + + D+Q + E S D+ +QK
Sbjct: 38 GAHQFIPIGFGIKKLQINCVVEDDKVSLDDLQQSIEEDEDHVQSTDIAAMQK 89
>pdb|1H6K|C Chain C, Nuclear Cap Binding Complex
pdb|1H6K|B Chain B, Nuclear Cap Binding Complex
pdb|1H6K|A Chain A, Nuclear Cap Binding Complex
Length = 757
Score = 25.0 bits (53), Expect = 3.3
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 73 SKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDI 128
+K + KIQK+LEE + E+L R + + + + I+ Q K+ + Q K++
Sbjct: 630 NKHVLKIQKELEEAK-------EKLARQHDGVLEEQ--IERLQEKVESAQSEQKNL 676
>pdb|1M1J|C Chain C, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|F Chain F, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
Length = 409
Score = 25.0 bits (53), Expect = 3.3
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 70 TYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQE 113
T + + + + +E+L + ++ EE+ R E +I ++ TIQ+
Sbjct: 66 TIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQ 109
>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|2HDH|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 293
Score = 25.0 bits (53), Expect = 3.3
Identities = 13/40 (32%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 97 LERDEESIAKNKKTIQEYQNKIANFQKYYKDIKDIDDYSA 136
+++ E+ +AK+KK I+E K+A +K+ ++ K D++ A
Sbjct: 33 VDQTEDILAKSKKGIEESLRKVAK-KKFAENPKAGDEFVA 71
>pdb|1F60|B Chain B, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|B Chain B, Yeast Eef1a:eef1ba In Complex With Gdpnp
Length = 94
Score = 25.0 bits (53), Expect = 3.3
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 30 GKDDAIPIETRLHKNKLTIISKTDSIEIQDIQFNRENCSHTYTSKDLEKIQK 81
G IPI + K ++ + + D + + D+Q + E S D+ +QK
Sbjct: 42 GAHQFIPIGFGIKKLQINCVVEDDKVSLDDLQQSIEEDEDHVQSTDIAAMQK 93
>pdb|1EI3|C Chain C, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|F Chain F, Crystal Structure Of Native Chicken Fibrinogen
Length = 409
Score = 25.0 bits (53), Expect = 3.3
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 70 TYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQE 113
T + + + + +E+L + ++ EE+ R E +I ++ TIQ+
Sbjct: 66 TIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQ 109
>pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyrus Kandleri
Length = 404
Score = 25.0 bits (53), Expect = 3.3
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 57 IQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQN 116
I+D++ + ++LE+ +K++ ++E+ + EEL EE + K K+ +
Sbjct: 278 IEDVEVRTIDDLRVIARENLERRRKEIPKVEKLIE---EELSTVEEELEKLKE-----RR 329
Query: 117 KIANFQKYYKDIKD 130
+A+ K +IKD
Sbjct: 330 LVADVAKSLHEIKD 343
>pdb|1FI5|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac
Troponin C Bound To The N Terminal Domain Of Cardiac
Troponin I
Length = 81
Score = 24.6 bits (52), Expect = 4.3
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 55 IEIQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELE 98
I++++++ + T T D+E++ KD ++ +G + E LE
Sbjct: 32 IDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 75
>pdb|1IH0|A Chain A, Structure Of The C-Domain Of Human Cardiac Troponin C In
Complex With Ca2+ Sensitizer Emd 57033
Length = 71
Score = 24.6 bits (52), Expect = 4.3
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 55 IEIQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELE 98
I++++++ + T T D+E++ KD ++ +G + E LE
Sbjct: 22 IDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 65
>pdb|1AJ4| Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 24.6 bits (52), Expect = 4.3
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 55 IEIQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELE 98
I++++++ + T T D+E++ KD ++ +G + E LE
Sbjct: 112 IDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 155
>pdb|3CTN| Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 30
Structures
Length = 76
Score = 24.6 bits (52), Expect = 4.3
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 55 IEIQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELE 98
I++++++ + T T D+E++ KD ++ +G + E LE
Sbjct: 27 IDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 70
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
Length = 161
Score = 24.6 bits (52), Expect = 4.3
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 55 IEIQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELE 98
I++++++ + T T D+E++ KD ++ +G + E LE
Sbjct: 112 IDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 155
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 24.3 bits (51), Expect = 5.7
Identities = 12/38 (31%), Positives = 26/38 (67%), Gaps = 1/38 (2%)
Query: 97 LERDEESIAKNKKTIQEYQNKIANFQKYYKDIKDIDDY 134
+++ E+ +AK+KK I+E K+A +K+ ++ K D++
Sbjct: 44 VDQTEDILAKSKKGIEESLRKVAK-KKFAENPKAGDEF 80
>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|B Chain B, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|C Chain C, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
Length = 302
Score = 24.3 bits (51), Expect = 5.7
Identities = 12/38 (31%), Positives = 26/38 (67%), Gaps = 1/38 (2%)
Query: 97 LERDEESIAKNKKTIQEYQNKIANFQKYYKDIKDIDDY 134
+++ E+ +AK+KK I+E K+A +K+ ++ K D++
Sbjct: 44 VDQTEDILAKSKKGIEESLRKVAK-KKFAENPKAGDEF 80
>pdb|1CEV|A Chain A, Arginase From Bacillus Caldovelox, Native Structure At Ph
5.6
pdb|1CEV|B Chain B, Arginase From Bacillus Caldovelox, Native Structure At Ph
5.6
pdb|1CEV|C Chain C, Arginase From Bacillus Caldovelox, Native Structure At Ph
5.6
pdb|1CEV|D Chain D, Arginase From Bacillus Caldovelox, Native Structure At Ph
5.6
pdb|1CEV|E Chain E, Arginase From Bacillus Caldovelox, Native Structure At Ph
5.6
pdb|1CEV|F Chain F, Arginase From Bacillus Caldovelox, Native Structure At Ph
5.6
pdb|2CEV|A Chain A, Arginase From Bacillus Caldevelox, Native Structure At Ph
8.5
pdb|2CEV|B Chain B, Arginase From Bacillus Caldevelox, Native Structure At Ph
8.5
pdb|2CEV|C Chain C, Arginase From Bacillus Caldevelox, Native Structure At Ph
8.5
pdb|2CEV|D Chain D, Arginase From Bacillus Caldevelox, Native Structure At Ph
8.5
pdb|2CEV|E Chain E, Arginase From Bacillus Caldevelox, Native Structure At Ph
8.5
pdb|2CEV|F Chain F, Arginase From Bacillus Caldevelox, Native Structure At Ph
8.5
pdb|3CEV|A Chain A, Arginase From Bacillus Caldevelox, Complexed With
L-Arginine
pdb|3CEV|B Chain B, Arginase From Bacillus Caldevelox, Complexed With
L-Arginine
pdb|3CEV|C Chain C, Arginase From Bacillus Caldevelox, Complexed With
L-Arginine
pdb|3CEV|D Chain D, Arginase From Bacillus Caldevelox, Complexed With
L-Arginine
pdb|3CEV|E Chain E, Arginase From Bacillus Caldevelox, Complexed With
L-Arginine
pdb|3CEV|F Chain F, Arginase From Bacillus Caldevelox, Complexed With
L-Arginine
pdb|5CEV|A Chain A, Arginase From Bacillus Caldevelox, L-Lysine Complex
pdb|5CEV|B Chain B, Arginase From Bacillus Caldevelox, L-Lysine Complex
pdb|5CEV|C Chain C, Arginase From Bacillus Caldevelox, L-Lysine Complex
pdb|5CEV|D Chain D, Arginase From Bacillus Caldevelox, L-Lysine Complex
pdb|5CEV|E Chain E, Arginase From Bacillus Caldevelox, L-Lysine Complex
pdb|5CEV|F Chain F, Arginase From Bacillus Caldevelox, L-Lysine Complex
pdb|4CEV|A Chain A, Arginase From Bacillus Caldevelox, L-Ornithine Complex
pdb|4CEV|B Chain B, Arginase From Bacillus Caldevelox, L-Ornithine Complex
pdb|4CEV|C Chain C, Arginase From Bacillus Caldevelox, L-Ornithine Complex
pdb|4CEV|D Chain D, Arginase From Bacillus Caldevelox, L-Ornithine Complex
pdb|4CEV|E Chain E, Arginase From Bacillus Caldevelox, L-Ornithine Complex
pdb|4CEV|F Chain F, Arginase From Bacillus Caldevelox, L-Ornithine Complex
Length = 299
Score = 24.3 bits (51), Expect = 5.7
Identities = 13/44 (29%), Positives = 22/44 (49%)
Query: 76 LEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIA 119
LE++ D+E+L + E L +S +N K + E K+A
Sbjct: 36 LERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLA 79
>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
pdb|1IL0|B Chain B, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
Length = 302
Score = 24.3 bits (51), Expect = 5.7
Identities = 12/38 (31%), Positives = 26/38 (67%), Gaps = 1/38 (2%)
Query: 97 LERDEESIAKNKKTIQEYQNKIANFQKYYKDIKDIDDY 134
+++ E+ +AK+KK I+E K+A +K+ ++ K D++
Sbjct: 44 VDQTEDILAKSKKGIEESLRKVAK-KKFAENPKAGDEF 80
>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
pdb|1F0Y|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
Length = 302
Score = 24.3 bits (51), Expect = 5.7
Identities = 12/38 (31%), Positives = 26/38 (67%), Gaps = 1/38 (2%)
Query: 97 LERDEESIAKNKKTIQEYQNKIANFQKYYKDIKDIDDY 134
+++ E+ +AK+KK I+E K+A +K+ ++ K D++
Sbjct: 44 VDQTEDILAKSKKGIEESLRKVAK-KKFAENPKAGDEF 80
>pdb|1EX4|A Chain A, Hiv-1 Integrase Catalytic Core And C-Terminal Domain
pdb|1EX4|B Chain B, Hiv-1 Integrase Catalytic Core And C-Terminal Domain
Length = 239
Score = 23.9 bits (50), Expect = 7.4
Identities = 9/22 (40%), Positives = 15/22 (67%)
Query: 109 KTIQEYQNKIANFQKYYKDIKD 130
K +Q+ KI NF+ YY+D ++
Sbjct: 162 KELQKQITKIQNFRVYYRDSRN 183
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 23.9 bits (50), Expect = 7.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 71 YTSKDLEKIQKDLEELEEGVPELFEELER 99
Y KD E I++DLE + P L E L++
Sbjct: 107 YNRKDKEGIKRDLEWIFSLFPRLKERLKQ 135
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 23.9 bits (50), Expect = 7.4
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 81 KDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDIKD 130
K + ELE + +L E+LE ++ + K +K ++ ++ + +D D
Sbjct: 1116 KKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165
Score = 23.5 bits (49), Expect = 9.7
Identities = 12/45 (26%), Positives = 23/45 (50%)
Query: 78 KIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQ 122
K+ K+ + LEE V +L L +EE K ++++ I+ +
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELE 1045
>pdb|1QFF|A Chain A, E. Coli Ferric Hydroxamate Uptake Receptor (Fhua) In
Complex With Bound Ferrichrome-Iron
Length = 725
Score = 23.9 bits (50), Expect = 7.4
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 10 TLLIVISLGKGLNSLISAWRGKDDAIPI 37
TLL + + N I+AW G DD++P+
Sbjct: 373 TLLTGVDFXRXRND-INAWFGYDDSVPL 399
>pdb|1FCP|A Chain A, Ferric Hydroxamate Uptake Receptor (Fhua) From E.Coli In
Complex With Bound Ferrichrome-Iron
Length = 705
Score = 23.9 bits (50), Expect = 7.4
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 10 TLLIVISLGKGLNSLISAWRGKDDAIPI 37
TLL + + N I+AW G DD++P+
Sbjct: 355 TLLTGVDFXRXRND-INAWFGYDDSVPL 381
>pdb|1GH8|A Chain A, Solution Structure Of The Archaeal Translation Elongation
Factor 1beta From Methanobacterium Thermoautotrophicum
Length = 89
Score = 23.5 bits (49), Expect = 9.7
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 75 DLEKIQKDLEELEEGVPELFEELERDEESIA 105
DLE ++K E++E +PE E + DEE IA
Sbjct: 18 DLEALKK---EIQERIPEGTELHKIDEEPIA 45
>pdb|1M9Z|A Chain A, Crystal Structure Of Human Tgf-Beta Type Ii Receptor
Ligand Binding Domain
Length = 111
Score = 23.5 bits (49), Expect = 9.7
Identities = 9/22 (40%), Positives = 13/22 (58%)
Query: 25 ISAWRGKDDAIPIETRLHKNKL 46
++ WR D+ I +ET H KL
Sbjct: 37 VAVWRKNDENITLETVCHDPKL 58
>pdb|1KTZ|B Chain B, Crystal Structure Of The Human Tgf-Beta Type Ii Receptor
Extracellular Domain In Complex With Tgf-Beta3
Length = 122
Score = 23.5 bits (49), Expect = 9.7
Identities = 9/22 (40%), Positives = 13/22 (58%)
Query: 25 ISAWRGKDDAIPIETRLHKNKL 46
++ WR D+ I +ET H KL
Sbjct: 48 VAVWRKNDENITLETVCHDPKL 69
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.312 0.132 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 759,976
Number of Sequences: 13198
Number of extensions: 28473
Number of successful extensions: 109
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 38
length of query: 140
length of database: 2,899,336
effective HSP length: 79
effective length of query: 61
effective length of database: 1,856,694
effective search space: 113258334
effective search space used: 113258334
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (23.5 bits)