BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645503|ref|NP_207678.1| virulence factor mviN
protein (mviN) [Helicobacter pylori 26695]
(461 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DXR|L Chain L, Photosynthetic Reaction Center From Rho... 28 2.8
pdb|1FFT|C Chain C, The Structure Of Ubiquinol Oxidase From... 28 2.8
pdb|6PRC|L Chain L, Photosynthetic Reaction Center From Rho... 28 2.8
pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5 27 3.7
pdb|1JJC|B Chain B, Crystal Structure At 2.6a Resolution Of... 27 4.8
>pdb|1DXR|L Chain L, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis - His L168 Phe Mutant (Terbutryn Complex)
Length = 273
Score = 27.7 bits (60), Expect = 2.8
Identities = 11/23 (47%), Positives = 15/23 (64%)
Query: 55 VGLIFCIVLFMWCLLVALNPLWL 77
V L FC+ +FM+C+L PL L
Sbjct: 117 VPLAFCVPIFMFCVLQVFRPLLL 139
>pdb|1FFT|C Chain C, The Structure Of Ubiquinol Oxidase From Escherichia Coli
pdb|1FFT|H Chain H, The Structure Of Ubiquinol Oxidase From Escherichia Coli
Length = 204
Score = 27.7 bits (60), Expect = 2.8
Identities = 14/51 (27%), Positives = 24/51 (46%), Gaps = 3/51 (5%)
Query: 255 VFQLPLAL---FAIAISTALFPSIAIALKNNQQDLILQRLQKAWFFLVGVL 302
+F+LP L F + S+ + AIA+ N + ++ L W F G +
Sbjct: 63 IFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWLALTWLFGAGFI 113
>pdb|6PRC|L Chain L, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Dg-420314 (Triazine) Complex)
pdb|1PRC|L Chain L, Photosynthetic Reaction Center
pdb|5PRC|L Chain L, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Atrazine Complex)
pdb|4PRC|L Chain L, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Stigmatellin Complex)
pdb|3PRC|L Chain L, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Qb-Depleted)
pdb|2PRC|L Chain L, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Ubiquinone-2 Complex)
pdb|7PRC|L Chain L, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Dg-420315 (Triazine) Complex)
Length = 273
Score = 27.7 bits (60), Expect = 2.8
Identities = 11/23 (47%), Positives = 15/23 (64%)
Query: 55 VGLIFCIVLFMWCLLVALNPLWL 77
V L FC+ +FM+C+L PL L
Sbjct: 117 VPLAFCVPIFMFCVLQVFRPLLL 139
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
Length = 473
Score = 27.3 bits (59), Expect = 3.7
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 134 NVCMILALLISKEKTHLEALYYLSYGVLLGGVAQILLHFYPLVKLGLLNL 183
N+ I A ISK T Y + V LG ++LH Y VK L++L
Sbjct: 23 NILQIDAKDISKSLTKFSECYGPVFTVYLGMKPTVVLHGYEAVKEALVDL 72
>pdb|1JJC|B Chain B, Crystal Structure At 2.6a Resolution Of Phenylalanyl-Trna
Synthetase Complexed With Phenylalanyl-Adenylate In The
Presence Of Manganese
pdb|1PYS|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
pdb|1EIY|B Chain B, The Crystal Structure Of Phenylalanyl-Trna Synthetase From
Thermus Thermophilus Complexed With Cognate Trnaphe
pdb|1B7Y|B Chain B, Phenylalanyl Trna Synthetase Complexed With
Phenylalaninyl- Adenylate
pdb|1B70|B Chain B, Phenylalanyl Trna Synthetase Complexed With Phenylalanine
Length = 785
Score = 26.9 bits (58), Expect = 4.8
Identities = 18/42 (42%), Positives = 22/42 (51%), Gaps = 3/42 (7%)
Query: 259 PLALFAIAISTALFPSIAIALKNNQQDLILQRLQKAWFFLVG 300
PLA A+ T LFP + LK N L L R ++A F VG
Sbjct: 536 PLAPEKAALRTHLFPGLVRVLKEN---LDLDRPERALLFEVG 574
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.332 0.145 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,283,468
Number of Sequences: 13198
Number of extensions: 82364
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 145
Number of HSP's gapped (non-prelim): 7
length of query: 461
length of database: 2,899,336
effective HSP length: 91
effective length of query: 370
effective length of database: 1,698,318
effective search space: 628377660
effective search space used: 628377660
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (26.2 bits)