BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645504|ref|NP_207679.1| cysteinyl-tRNA synthetase
(cysS) [Helicobacter pylori 26695]
(465 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Syn... 341 9e-95
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna ... 40 6e-04
pdb|1A8H| Methionyl-Trna Synthetase From Thermus Thermoph... 36 0.008
pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotryp... 33 0.052
pdb|1DD3|A Chain A, Crystal Structure Of Ribosomal Protein ... 33 0.052
pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methion... 32 0.12
pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escheric... 32 0.12
pdb|1A26| The Catalytic Fragment Of Poly(Adp-Ribose) Poly... 31 0.34
pdb|1EFY|A Chain A, Crystal Structure Of The Catalytic Frag... 31 0.34
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus The... 30 0.57
pdb|1G43|A Chain A, Crystal Structure Of A Family Iiia Cbd ... 28 1.7
pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermo... 28 1.7
pdb|1TFE| Dimerization Domain Of Ef-Ts From T. Thermophilus 28 1.7
pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-Trna S... 27 3.7
pdb|1H3F|A Chain A, Tyrosyl-Trna Synthetase From Thermus Th... 27 4.8
pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus ... 27 4.8
pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synth... 27 6.3
pdb|1EO6|B Chain B, Crystal Structure Of Gate-16 >gi|108359... 26 8.3
pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From... 26 8.3
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspar... 26 8.3
>pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
Length = 461
Score = 341 bits (875), Expect = 9e-95
Identities = 186/468 (39%), Positives = 275/468 (58%), Gaps = 18/468 (3%)
Query: 3 IYDTKLKQKVPFEPLVQNKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYEVML 62
I++T +QK F+P+ + +YVCG TVYD H+GH R+ +AFD++ R L GY++
Sbjct: 4 IFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKY 63
Query: 63 VRNFTDIDDKIINKALKENKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVG 122
VRN TDIDDKII +A + +S + I +D +ALN+ +P +EP+A+ ++ ++
Sbjct: 64 VRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIE 123
Query: 123 MIETLLEKNIAYQVSNGDIYLDTSKDKDYGSLSVHN-SSIEFG-RIGLVQEKRLEQDFVL 180
+ E L+ K AY NGD+ D D YG LS + ++ G R+ +V +KR DFVL
Sbjct: 124 LTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVL 183
Query: 181 WKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALTNTPYQIDIHAGGADLLFPHHEN 240
WK K + + + SP G GRPGWHIECS+M + L DIH GG+DL+FPHHEN
Sbjct: 184 WKMSK-EGEPSWPSPWGAGRPGWHIECSAMNCKQLG-----NHFDIHGGGSDLMFPHHEN 237
Query: 241 EACQTRCAFGVELAKYWMHNGFVNINNEKMSKSLGNSFFVKDALKNYDGEILRNYLLGVH 300
E Q+ CA + YWMH+G V ++ EKMSKSLGN F V+D LK YD E +R +L+ H
Sbjct: 238 EIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGH 297
Query: 301 YRSVLNFNEEDLLVSKKRLDKIY---RLKQRVLGTLGGINPNFKKEILECMQDDLNVSKA 357
YRS LN++EE+L ++ L+++Y R + + GG F+ +E M DD N +A
Sbjct: 298 YRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGG--EAFEARFIEAMDDDFNTPEA 355
Query: 358 LSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKDPSAYFQLG--VSESE 415
SVL M N ++ A + ++L+ + +LG+ ++P A+ Q G +SE
Sbjct: 356 YSVLFDMAREVNR---LKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSE 412
Query: 416 KQEIENKIEERKRAKERKDFLKADSIREELLKQKIALMDTPQGTIWEK 463
EIE I++R A++ KD+ AD+ R+ L + I L D PQGT W +
Sbjct: 413 VAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRR 460
>pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 40.0 bits (92), Expect = 6e-04
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 222 YQIDIHAGGADLLFPHHENEACQTRCAFGVELAKYWMHNGFV-NINNEKMSKSLGNSFFV 280
+ D++ G+D + + GV K+ + +GFV + +KMSKSLGN
Sbjct: 547 FPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVP 606
Query: 281 KDALKNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPN 339
+K +I R ++ Y + + ++E L + KI + +LG + NP+
Sbjct: 607 DQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPD 665
>pdb|1A8H| Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 36.2 bits (82), Expect = 0.008
Identities = 76/331 (22%), Positives = 116/331 (34%), Gaps = 69/331 (20%)
Query: 25 YVCGPTVYDDA--HLGHARSAIAFDLLRRTLELSGYEVMLVRNFTDIDDKI--------- 73
YV P Y +A HLGHA + + D L R L GY + + + +
Sbjct: 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGE 65
Query: 74 -----INKALKENKSIQELSSIYIESYTRDLNALNVKKPSLE-PKASEYLDAMVGMIETL 127
+++ K +L I + + R + K L K E D G E L
Sbjct: 66 DPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGL 125
Query: 128 LEKNIAYQVSNGDIYLDTSKDKDYGSLSVHNSSIEFGRIG------------LVQEKRLE 175
Y VS Y T K+ G +H +E + G L + +
Sbjct: 126 ------YCVSCERFY--TEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQEN 177
Query: 176 QDFVLWKSYKGDNDVGFDSPLG-------KGRPGWHI-------ECSSMVFETLALTNTP 221
D + + Y+ + P+G K R W I + + F+ AL N
Sbjct: 178 PDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTYVWFD--ALLNYV 235
Query: 222 YQIDIHAG--------------GADLLFPHHENEACQTRCAFGVELAKYWMHNGFV-NIN 266
+D G G D+L PH + A G+ + ++ GF+ +
Sbjct: 236 SALDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAA-GIPMYRHLNVGGFLLGPD 294
Query: 267 NEKMSKSLGNSFFVKDALKNYDGEILRNYLL 297
KMSK+LGN L+ Y + LR YLL
Sbjct: 295 GRKMSKTLGNVVDPFALLEKYGRDALRYYLL 325
>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
pdb|1EQ9|B Chain B, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
Length = 222
Score = 33.5 bits (75), Expect = 0.052
Identities = 28/96 (29%), Positives = 48/96 (49%), Gaps = 14/96 (14%)
Query: 221 PYQIDI-----HAGGADLLFPHHENEACQTRCAFGVELAKYWMHNGFVNINNEKMSKSLG 275
PYQ+ + H GA +L + N C G+ ++ V++ +S+S G
Sbjct: 13 PYQVSLRLSGSHRCGASIL--DNNNVLTAAHCVDGLSN----LNRLKVHVGTNYLSES-G 65
Query: 276 NSFFVKDAL--KNYDGEILRNYLLGVHYRSVLNFNE 309
+ + V+DA+ KNYD +LRN + VH + + FN+
Sbjct: 66 DVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFND 101
>pdb|1DD3|A Chain A, Crystal Structure Of Ribosomal Protein L12 From Thermotoga
Maritima
pdb|1DD3|B Chain B, Crystal Structure Of Ribosomal Protein L12 From Thermotoga
Maritima
pdb|1DD4|A Chain A, Crystal Structure Of Ribosomal Protein L12 From Thermotoga
Maritima
pdb|1DD4|B Chain B, Crystal Structure Of Ribosomal Protein L12 From Thermotoga
Maritima
pdb|1GIY|I Chain I, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
pdb|1GIY|J Chain J, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
Length = 128
Score = 33.5 bits (75), Expect = 0.052
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 343 EILECMQDDLNVSKALSVLESML--------SSTNEKLDQNPKNKALKGEILANLKFIEE 394
E+++ ++D V+ A V + ++ EK + + K+ + +K + E
Sbjct: 20 ELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQEEKTEFDVVLKSFGQNKIQVIKVVRE 79
Query: 395 LLGIGFKD----------PSAYFQLGVSESEKQEIENKIEERKRAKERK 433
+ G+G K+ P A + GVS+ E +EI+ K+EE E K
Sbjct: 80 ITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVELK 128
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 32.3 bits (72), Expect = 0.12
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 260 NGFVNINNEKMSKSLGNSFFVKDALKNYDGEILRNYLLGVHYRSV--LNFNEEDLL--VS 315
+G+V +N KMSKS G L ++D + LR Y + ++ N ED + V+
Sbjct: 324 HGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVN 383
Query: 316 KKRLDKIYRLKQRVLGTLGGINPNF 340
++K+ L R G IN F
Sbjct: 384 ADIVNKVVNLASR---NAGFINKRF 405
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 32.3 bits (72), Expect = 0.12
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 260 NGFVNINNEKMSKSLGNSFFVKDALKNYDGEILRNYLLGVHYRSV--LNFNEEDLL--VS 315
+G+V +N KMSKS G L ++D + LR Y + ++ N ED + V+
Sbjct: 323 HGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVN 382
Query: 316 KKRLDKIYRLKQRVLGTLGGINPNF 340
++K+ L R G IN F
Sbjct: 383 ADIVNKVVNLASR---NAGFINKRF 404
>pdb|1A26| The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase Complexed
With Carba-Nad
pdb|1PAX| The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase Complexed
With 3,4-Dihydro-5-Methyl-Isoquinolinone
pdb|2PAX| The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase Complexed
With 4-Amino-1,8-Naphthalimide
pdb|3PAX| The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase Complexed
With 3-Methoxybenzamide
pdb|4PAX| The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase Complexed
With 8-Hydroxy-2-Methyl-3-Hydro-Quinazolin-4-One
pdb|2PAW| The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Length = 361
Score = 30.8 bits (68), Expect = 0.34
Identities = 18/66 (27%), Positives = 33/66 (49%), Gaps = 1/66 (1%)
Query: 74 INKALKENKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIA 133
+ +A+ + S ++ + YT + +KKP L EY+ A V M++ LL+ +A
Sbjct: 63 VQQAVSDGGSESQILDLSNRFYTLIPHDFGMKKPPLLSNL-EYIQAKVQMLDNLLDIEVA 121
Query: 134 YQVSNG 139
Y + G
Sbjct: 122 YSLLRG 127
>pdb|1EFY|A Chain A, Crystal Structure Of The Catalytic Fragment Of Poly (Adp-
Ribose) Polymerase Complexed With A Benzimidazole
Inhibitor
Length = 350
Score = 30.8 bits (68), Expect = 0.34
Identities = 18/66 (27%), Positives = 33/66 (49%), Gaps = 1/66 (1%)
Query: 74 INKALKENKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIA 133
+ +A+ + S ++ + YT + +KKP L EY+ A V M++ LL+ +A
Sbjct: 55 VQQAVSDGGSESQILDLSNRFYTLIPHDFGMKKPPLLSNL-EYIQAKVQMLDNLLDIEVA 113
Query: 134 YQVSNG 139
Y + G
Sbjct: 114 YSLLRG 119
>pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus
Complexed With A Sulphamoyl Analogue Of
Leucyl-Adenylate
Length = 878
Score = 30.0 bits (66), Expect = 0.57
Identities = 14/43 (32%), Positives = 22/43 (50%)
Query: 19 QNKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYEVM 61
+ K + V P D H+GH ++ D+L R + GYEV+
Sbjct: 32 RGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVL 74
>pdb|1G43|A Chain A, Crystal Structure Of A Family Iiia Cbd From Clostridium
Cellulolyticum
Length = 160
Score = 28.5 bits (62), Expect = 1.7
Identities = 30/108 (27%), Positives = 48/108 (43%), Gaps = 15/108 (13%)
Query: 114 SEYLDAMVGMIETLLEKNIAYQVSNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGLVQEKR 173
S Y+DA + + K ++ V+N D YL+ + + D GSL SIE +Q +
Sbjct: 68 SNYIDATSKVTGSF--KAVSPAVTNADHYLEVALNSDAGSLPA-GGSIE------IQTRF 118
Query: 174 LEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALTNTP 221
D W ++ ND + + W + S+ V TLA +TP
Sbjct: 119 ARND---WSNFDQSNDWSYTA--AGSYMDWQ-KISAFVGGTLAYGSTP 160
>pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|G Chain G, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|H Chain H, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|D Chain D, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 196
Score = 28.5 bits (62), Expect = 1.7
Identities = 18/59 (30%), Positives = 32/59 (53%), Gaps = 8/59 (13%)
Query: 401 KDPSAYFQLGVSESEKQEIENKIEERKRAKERKD-------FLKADSIR-EELLKQKIA 451
K+ Y Q ++E + Q+I KI E + K ++ F+K D ++ +EL++Q IA
Sbjct: 120 KERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIA 178
>pdb|1TFE| Dimerization Domain Of Ef-Ts From T. Thermophilus
Length = 145
Score = 28.5 bits (62), Expect = 1.7
Identities = 18/59 (30%), Positives = 32/59 (53%), Gaps = 8/59 (13%)
Query: 401 KDPSAYFQLGVSESEKQEIENKIEERKRAKERKD-------FLKADSIR-EELLKQKIA 451
K+ Y Q ++E + Q+I KI E + K ++ F+K D ++ +EL++Q IA
Sbjct: 66 KERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIA 124
>pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-Trna Synthetase Complexed
With The Trna(Arg) And L-Arg
pdb|1F7V|A Chain A, Crystal Structure Of Yeast Arginyl-Trna Synthetase
Complexed With The Trnaarg
pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase
Length = 607
Score = 27.3 bits (59), Expect = 3.7
Identities = 18/53 (33%), Positives = 23/53 (42%), Gaps = 1/53 (1%)
Query: 17 LVQNKANIY-VCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYEVMLVRNFTD 68
LV+NK I P + H GH RS I L E G+EV+ + D
Sbjct: 139 LVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGD 191
Score = 26.2 bits (56), Expect = 8.3
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 76 KALKENKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVGMIETLLEKNIAYQ 135
+ALK K +E S IE Y LN+K ++ ++M+ I+ EK + ++
Sbjct: 261 EALKIWKRFREFS---IEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHE 317
Query: 136 VSNGDIYLDTSK-DKDYGSLSVHNS 159
G + +D +K +K G V S
Sbjct: 318 -DKGAVLIDLTKFNKKLGKAIVQKS 341
>pdb|1H3F|A Chain A, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Tyrosinol
pdb|1H3F|B Chain B, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Tyrosinol
pdb|1H3E|A Chain A, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Wild-Type Trnatyr(Gua) And With Atp And
Tyrosinol
Length = 432
Score = 26.9 bits (58), Expect = 4.8
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 402 DPSAYFQLGVS-ESEKQEIENKIEERKRAKERKDFLKADSIREELLKQKIALMDTPQGTI 460
D + Y LG + E+ ++ E EE +RA+ R D + I EE+ + I + +G I
Sbjct: 310 DRAFYESLGYAWEAFGRDKEAGPEEVRRAEARYDEVAKGGIPEEIPEVTIPASELKEGRI 369
Query: 461 W 461
W
Sbjct: 370 W 370
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
Mevalonate Kinase
Length = 317
Score = 26.9 bits (58), Expect = 4.8
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 374 QNPKNKALKGEILANLKFIEELLGIGFKDPSAYFQLGVSESEK--------QEIENKIEE 425
+N K + +KGE LK + L+ K +L V+E K +EI+ I+E
Sbjct: 173 KNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAEL-VNEVAKIENKDEIFKEIDKVIDE 231
Query: 426 RKRAKERKDFLKADSIREELLKQ 448
+ K ++DF K + ELLK+
Sbjct: 232 ALKIKNKEDFGKLMTKNHELLKK 254
>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase
Length = 592
Score = 26.6 bits (57), Expect = 6.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 34 DAHLGHARSAIAFDLLRRTLELSGYEVMLVRNFTD 68
+ H+GH R+ D + R L +G EV LV N+ D
Sbjct: 117 ELHVGHLRNIALGDAIARILAYAGREV-LVLNYID 150
>pdb|1EO6|B Chain B, Crystal Structure Of Gate-16
pdb|1EO6|A Chain A, Crystal Structure Of Gate-16
Length = 117
Score = 26.2 bits (56), Expect = 8.3
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 155 SVHNSSIEFGRIGLVQEKRLEQDFVLWKSYKGDNDVGF 192
+V SS+ G++ EK ++D L+ +Y G+N GF
Sbjct: 83 TVPQSSLTMGQL---YEKEKDEDGFLYVAYSGENTFGF 117
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 26.2 bits (56), Expect = 8.3
Identities = 11/40 (27%), Positives = 20/40 (49%)
Query: 122 GMIETLLEKNIAYQVSNGDIYLDTSKDKDYGSLSVHNSSI 161
G+ E E NI Y+ N D+Y D +G ++ +++
Sbjct: 220 GIEEKFYEGNITYEKLNHDLYWQIDLDVHFGKQTMEKANV 259
>pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 26.2 bits (56), Expect = 8.3
Identities = 11/40 (27%), Positives = 20/40 (49%)
Query: 122 GMIETLLEKNIAYQVSNGDIYLDTSKDKDYGSLSVHNSSI 161
G+ E E NI Y+ N D+Y D +G ++ +++
Sbjct: 174 GIEEKFYEGNITYEKLNHDLYWQIDLDVHFGKQTMEKANV 213
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.136 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,670,627
Number of Sequences: 13198
Number of extensions: 112705
Number of successful extensions: 287
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 26
length of query: 465
length of database: 2,899,336
effective HSP length: 92
effective length of query: 373
effective length of database: 1,685,120
effective search space: 628549760
effective search space used: 628549760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)