BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644720|ref|NP_206890.1| malonyl coenzyme A-acyl
carrier protein transacylase (fabD) [Helicobacter pylori 26695]
(309 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1MLA| Mol_id: 1; Molecule: Malonyl-Coenzyme A Acyl Ca... 149 5e-37
pdb|1QE3|A Chain A, Pnb Esterase 25 8.6
pdb|1C7J|A Chain A, Pnb Esterase 56c8 25 8.6
pdb|1C7I|A Chain A, Thermophylic Pnb Esterase 25 8.6
>pdb|1MLA| Mol_id: 1; Molecule: Malonyl-Coenzyme A Acyl Carrier Protein
Transacylase; Chain: Null; Synonym: Malonyl-Coa Acp
Transacylase; Engineered: Yes
Length = 309
Score = 149 bits (375), Expect = 5e-37
Identities = 102/295 (34%), Positives = 148/295 (49%), Gaps = 7/295 (2%)
Query: 2 QYALLFPGQGSQCVGMGKSFYESHTLAKELFERASNALKVDM-KKTLFEENELLKESAYT 60
Q+A +FPGQGSQ VGM S+ + +E F AS AL D+ T E L ++ T
Sbjct: 3 QFAFVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQT 62
Query: 61 QPAIYLVSYIAYQLLNKQVNGGLKPVFALGHSLGEVSAVSLSGALDFEKALKLTHQRGKM 120
QPA+ S Y++ +Q GG P GHSLGE SA+ +G +DF A++L RGK
Sbjct: 63 QPALLTASVALYRVWQQQ--GGKAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGKF 120
Query: 121 MQEACANKDASMMVVLGVSEESLLSLCQRTKN---VWCANFNGGMQVVLAGIKDDLKALE 177
MQEA +M ++G+ + S+ C+ V NFN QVV+AG K+ ++
Sbjct: 121 MQEAVPEGTGAMAAIIGLDDASIAKACEEAAEGQVVSPVNFNSPGQVVIAGHKEAVERAG 180
Query: 178 PTLKEMGAKRVVFLEMSVASHCPFLEPMTFKFQELLEKSLKDKFHFEIISNATNEAYHNK 237
K GAKR + L +SV SHC ++P K L K + +++N + N
Sbjct: 181 AACKAAGAKRALPLPVSVPSHCALMKPAADKLAVELAKITFNAPTVPVVNNVDVKCETNG 240
Query: 238 AKAVELLSLQLTQPVRYQDCVK-SNNDRVDVFFELGCGSVLKGLNKRLSNKPTIS 291
+ L QL PV++ V+ V+ +E+G G VL GL KR+ + T S
Sbjct: 241 DAIRDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVLTGLTKRIVDTLTAS 295
>pdb|1QE3|A Chain A, Pnb Esterase
Length = 489
Score = 25.4 bits (54), Expect = 8.6
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 90 GHSLGEVSAVSLSGALDFEKALKLTHQRGKMMQEACANKDASMMVVLGVSEESL 143
G S+ + A+ + L F+KA+ + M +E A+ A+ + VLG++E L
Sbjct: 192 GMSIAALLAMPAAKGL-FQKAIMESGASRTMTKEQAASTAAAFLQVLGINESQL 244
>pdb|1C7J|A Chain A, Pnb Esterase 56c8
Length = 489
Score = 25.4 bits (54), Expect = 8.6
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 90 GHSLGEVSAVSLSGALDFEKALKLTHQRGKMMQEACANKDASMMVVLGVSEESL 143
G S+ + A+ + L F+KA+ + M +E A+ A+ + VLG++E L
Sbjct: 192 GMSIAALLAMPAAKGL-FQKAIMESGASRTMTKEQAASTAAAFLQVLGINESQL 244
>pdb|1C7I|A Chain A, Thermophylic Pnb Esterase
Length = 489
Score = 25.4 bits (54), Expect = 8.6
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 90 GHSLGEVSAVSLSGALDFEKALKLTHQRGKMMQEACANKDASMMVVLGVSEESL 143
G S+ + A+ + L F+KA+ + M +E A+ A+ + VLG++E L
Sbjct: 192 GMSIAALLAMPAAKGL-FQKAIMESGASRTMTKEQAASTAAAFLQVLGINESQL 244
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.134 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,617,749
Number of Sequences: 13198
Number of extensions: 58744
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 133
Number of HSP's gapped (non-prelim): 4
length of query: 309
length of database: 2,899,336
effective HSP length: 88
effective length of query: 221
effective length of database: 1,737,912
effective search space: 384078552
effective search space used: 384078552
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)