BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645509|ref|NP_207684.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(174 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1C1X|A Chain A, L-Phenylalanine Dehydrogenase Structure... 27 1.3
pdb|1BXG|A Chain A, Phenylalanine Dehydrogenase Structure I... 27 1.3
pdb|1BW9|A Chain A, Phenylalanine Dehydrogenase Structure I... 27 1.3
pdb|1C1D|B Chain B, L-Phenylalanine Dehydrogenase Structure... 27 1.3
pdb|1BXG|B Chain B, Phenylalanine Dehydrogenase Structure I... 27 1.3
pdb|1C1X|B Chain B, L-Phenylalanine Dehydrogenase Structure... 27 1.3
pdb|1C1D|A Chain A, L-Phenylalanine Dehydrogenase Structure... 27 1.3
pdb|1BW9|B Chain B, Phenylalanine Dehydrogenase Structure I... 27 1.3
pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Ox... 25 3.8
pdb|4XIA|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5), D-Sor... 24 8.4
pdb|1XLM|A Chain A, D254e, D256e Mutant Of D-Xylose Isomera... 24 8.4
pdb|1KO6|B Chain B, Crystal Structure Of C-Terminal Autopro... 24 8.4
pdb|1XLA|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) (Apo F... 24 8.4
>pdb|1C1X|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 26.9 bits (58), Expect = 1.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 95 VGNTSCEVGIKVLSEDIKTREITHTNSCYFTMVAVENGKPTPMPKYEP 142
+ + + E G ++L D T + H + T VA+E+ TP + P
Sbjct: 190 LASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAP 237
>pdb|1BXG|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 26.9 bits (58), Expect = 1.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 95 VGNTSCEVGIKVLSEDIKTREITHTNSCYFTMVAVENGKPTPMPKYEP 142
+ + + E G ++L D T + H + T VA+E+ TP + P
Sbjct: 191 LASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAP 238
>pdb|1BW9|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 26.9 bits (58), Expect = 1.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 95 VGNTSCEVGIKVLSEDIKTREITHTNSCYFTMVAVENGKPTPMPKYEP 142
+ + + E G ++L D T + H + T VA+E+ TP + P
Sbjct: 191 LASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAP 238
>pdb|1C1D|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 26.9 bits (58), Expect = 1.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 95 VGNTSCEVGIKVLSEDIKTREITHTNSCYFTMVAVENGKPTPMPKYEP 142
+ + + E G ++L D T + H + T VA+E+ TP + P
Sbjct: 190 LASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAP 237
>pdb|1BXG|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 26.9 bits (58), Expect = 1.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 95 VGNTSCEVGIKVLSEDIKTREITHTNSCYFTMVAVENGKPTPMPKYEP 142
+ + + E G ++L D T + H + T VA+E+ TP + P
Sbjct: 191 LASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAP 238
>pdb|1C1X|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 26.9 bits (58), Expect = 1.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 95 VGNTSCEVGIKVLSEDIKTREITHTNSCYFTMVAVENGKPTPMPKYEP 142
+ + + E G ++L D T + H + T VA+E+ TP + P
Sbjct: 190 LASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAP 237
>pdb|1C1D|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 26.9 bits (58), Expect = 1.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 95 VGNTSCEVGIKVLSEDIKTREITHTNSCYFTMVAVENGKPTPMPKYEP 142
+ + + E G ++L D T + H + T VA+E+ TP + P
Sbjct: 190 LASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAP 237
>pdb|1BW9|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 26.9 bits (58), Expect = 1.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 95 VGNTSCEVGIKVLSEDIKTREITHTNSCYFTMVAVENGKPTPMPKYEP 142
+ + + E G ++L D T + H + T VA+E+ TP + P
Sbjct: 191 LASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAP 238
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
Length = 201
Score = 25.4 bits (54), Expect = 3.8
Identities = 21/78 (26%), Positives = 30/78 (37%)
Query: 69 LSVDGVTFKYPIPVGNLLTFLASINYVGNTSCEVGIKVLSEDIKTREITHTNSCYFTMVA 128
+SV+G T K G+ F + + GNTS G V D+ T+T V
Sbjct: 19 VSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVD 78
Query: 129 VENGKPTPMPKYEPKTEV 146
G P + TE+
Sbjct: 79 FAPGGTNPPHIHPRATEI 96
>pdb|4XIA|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5), D-Sorbitol Complex
pdb|4XIA|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5), D-Sorbitol Complex
pdb|5XIA|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5), Xylitol Complex
pdb|5XIA|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5), Xylitol Complex
Length = 393
Score = 24.3 bits (51), Expect = 8.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 121 SCYFTMVAVENGKPTPMPKY 140
S +FT+ +ENG P PKY
Sbjct: 265 SAFFTVDLLENGFPNGGPKY 284
>pdb|1XLM|A Chain A, D254e, D256e Mutant Of D-Xylose Isomerase Complexed With
Al3 And Xylitol
pdb|1XLM|B Chain B, D254e, D256e Mutant Of D-Xylose Isomerase Complexed With
Al3 And Xylitol
Length = 394
Score = 24.3 bits (51), Expect = 8.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 121 SCYFTMVAVENGKPTPMPKY 140
S +FT+ +ENG P PKY
Sbjct: 266 SAFFTVDLLENGFPNGGPKY 285
>pdb|1KO6|B Chain B, Crystal Structure Of C-Terminal Autoproteolytic Domain Of
Nucleoporin Nup98
pdb|1KO6|D Chain D, Crystal Structure Of C-Terminal Autoproteolytic Domain Of
Nucleoporin Nup98
Length = 64
Score = 24.3 bits (51), Expect = 8.4
Identities = 9/17 (52%), Positives = 12/17 (69%)
Query: 131 NGKPTPMPKYEPKTEVE 147
NGKP P P+ E K ++E
Sbjct: 43 NGKPAPPPQVEKKGQLE 59
>pdb|1XLA|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) (Apo Form)
pdb|1XLA|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) (Apo Form)
pdb|1XLG|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Complex With
D-Xylose(Slash)xylulose, Magnesium, And Aluminum
pdb|1XLG|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Complex With
D-Xylose(Slash)xylulose, Magnesium, And Aluminum
pdb|1DID|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Complex With
2,5-Dideoxy-2,5-Imino-D-Glucitol
pdb|1DID|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Complex With
2,5-Dideoxy-2,5-Imino-D-Glucitol
pdb|1DIE|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Complex With
1-Deoxy-Nojirimycin
pdb|1DIE|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Complex With
1-Deoxy-Nojirimycin
pdb|1XLD|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Complex With D-Xylose And
Manganese
pdb|1XLD|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Complex With D-Xylose And
Manganese
pdb|1XLF|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Gluconate
And Manganese
pdb|1XLF|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Gluconate
And Manganese
pdb|1XLI|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Complex With
5-Thio-Alpha-D-Glucose And Manganese
pdb|1XLI|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Complex With
5-Thio-Alpha-D-Glucose And Manganese
pdb|1XLC|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Complex With
D-Xylose(Slash)xylulose And Magnesium
pdb|1XLC|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Complex With
D-Xylose(Slash)xylulose And Magnesium
pdb|1XLJ|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Xylitol And
Manganese
pdb|1XLJ|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Xylitol And
Manganese
pdb|1XLE|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Manganese
pdb|1XLE|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Manganese
pdb|1XLK|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Manganese
pdb|1XLK|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Manganese
pdb|1XLL|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Zinc
pdb|1XLL|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Zinc
pdb|1XLB|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Magnesium
pdb|1XLB|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Magnesium
pdb|1XLH|A Chain A, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Aluminum
pdb|1XLH|B Chain B, D-Xylose Isomerase (E.C.5.3.1.5) Complex With Aluminum
Length = 394
Score = 24.3 bits (51), Expect = 8.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 121 SCYFTMVAVENGKPTPMPKY 140
S +FT+ +ENG P PKY
Sbjct: 266 SAFFTVDLLENGFPNGGPKY 285
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.134 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,019,415
Number of Sequences: 13198
Number of extensions: 41077
Number of successful extensions: 92
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 13
length of query: 174
length of database: 2,899,336
effective HSP length: 82
effective length of query: 92
effective length of database: 1,817,100
effective search space: 167173200
effective search space used: 167173200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)