BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645510|ref|NP_207685.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(90 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1CKN|B Chain B, Structure Of Guanylylated Mrna Capping ... 26 0.64
pdb|1CKN|A Chain A, Structure Of Guanylylated Mrna Capping ... 26 0.64
pdb|1I60|A Chain A, Structural Genomics, Ioli Protein >gi|2... 24 2.4
pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication In... 23 5.4
pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexe... 23 5.4
pdb|1KAF|A Chain A, Dna Binding Domain Of The Phage T4 Tran... 23 7.1
pdb|1CQA| Birch Pollen Profilin 23 7.1
>pdb|1CKN|B Chain B, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
Length = 330
Score = 26.2 bits (56), Expect = 0.64
Identities = 16/44 (36%), Positives = 22/44 (49%), Gaps = 3/44 (6%)
Query: 3 TIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLAPKYKD 46
TI T K + +L NG +K L+KVVG + + K KD
Sbjct: 5 TINTGKNITTERAVLTLNGLQIK-LHKVVGE--SRDDIVAKMKD 45
>pdb|1CKN|A Chain A, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
pdb|1CKM|A Chain A, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKM|B Chain B, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKO| Structure Of Mrna Capping Enzyme In Complex With The Cap Analog
Gpppg
Length = 330
Score = 26.2 bits (56), Expect = 0.64
Identities = 16/44 (36%), Positives = 22/44 (49%), Gaps = 3/44 (6%)
Query: 3 TIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLAPKYKD 46
TI T K + +L NG +K L+KVVG + + K KD
Sbjct: 5 TINTGKNITTERAVLTLNGLQIK-LHKVVGE--SRDDIVAKMKD 45
>pdb|1I60|A Chain A, Structural Genomics, Ioli Protein
pdb|1I6N|A Chain A, 1.8 A Crystal Structure Of Ioli Protein With A Binding
Zinc Atom
Length = 278
Score = 24.3 bits (51), Expect = 2.4
Identities = 18/61 (29%), Positives = 27/61 (43%), Gaps = 8/61 (13%)
Query: 3 TIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFRECHLK 62
T+E S DL++ K+G+D + T L KDH L + F+ H+K
Sbjct: 10 TLENSN-LKLDLELCEKHGYDYI-------EIRTXDKLPEYLKDHSLDDLAEYFQTHHIK 61
Query: 63 P 63
P
Sbjct: 62 P 62
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 23.1 bits (48), Expect = 5.4
Identities = 13/45 (28%), Positives = 24/45 (52%), Gaps = 2/45 (4%)
Query: 28 YKVVGNLATEQPLAPKYKDHPLKGGLKDFRECHLKPDLLLVYQIK 72
Y+V+ + A + A +H KG + +FR + DLLL+ ++
Sbjct: 66 YRVIYSSADD--FAQAXVEHLKKGTINEFRNXYKSVDLLLLDDVQ 108
>pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1QM4|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
Length = 396
Score = 23.1 bits (48), Expect = 5.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 1 MLTIETSKKFDKDLKILVKNGFDLK 25
+ T TSKK +++L +V FDL+
Sbjct: 333 IFTYGTSKKTERELLEVVNKNFDLR 357
>pdb|1KAF|A Chain A, Dna Binding Domain Of The Phage T4 Transcription Factor
Mota (Aa105-211)
pdb|1KAF|B Chain B, Dna Binding Domain Of The Phage T4 Transcription Factor
Mota (Aa105-211)
pdb|1KAF|C Chain C, Dna Binding Domain Of The Phage T4 Transcription Factor
Mota (Aa105-211)
pdb|1KAF|D Chain D, Dna Binding Domain Of The Phage T4 Transcription Factor
Mota (Aa105-211)
pdb|1KAF|F Chain F, Dna Binding Domain Of The Phage T4 Transcription Factor
Mota (Aa105-211)
pdb|1KAF|E Chain E, Dna Binding Domain Of The Phage T4 Transcription Factor
Mota (Aa105-211)
Length = 108
Score = 22.7 bits (47), Expect = 7.1
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 2 LTIETSKKFDKDL--KILVKNGFDLK 25
+ I + + DKDL K+L KNGF LK
Sbjct: 1 MEITSDMEEDKDLMLKLLDKNGFVLK 26
>pdb|1CQA| Birch Pollen Profilin
Length = 133
Score = 22.7 bits (47), Expect = 7.1
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 32 GNLATEQPLAPKYKDHPLKGGLKDFRE-CHLKPDLLLVYQIK 72
G++ + P++K + G +KDF E HL P L + IK
Sbjct: 32 GSVWAQSSSFPQFKPQEITGIMKDFEEPGHLAPTGLHLGGIK 73
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.143 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,634
Number of Sequences: 13198
Number of extensions: 19254
Number of successful extensions: 54
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 7
length of query: 90
length of database: 2,899,336
effective HSP length: 66
effective length of query: 24
effective length of database: 2,028,268
effective search space: 48678432
effective search space used: 48678432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)