BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645511|ref|NP_207686.1| hypothetical protein
[Helicobacter pylori 26695]
(95 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HSJ|A Chain A, Sarr Mbp Fusion Structure >gi|14488507|... 27 0.47
pdb|1JAG|A Chain A, Crystal Structure Of Human Deoxyguanosi... 25 1.8
pdb|1KIJ|A Chain A, Crystal Structure Of The 43k Atpase Dom... 24 3.1
pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antig... 23 4.0
pdb|1A6J|B Chain B, Nitrogen Regulatory Bacterial Protein I... 23 5.2
pdb|1AH8|B Chain B, Structure Of The Orthorhombic Form Of T... 23 6.9
pdb|1AMW| Adp Binding Site In The Hsp90 Molecular Chaperone 23 6.9
pdb|1BGQ| Radicicol Bound To The Atp Binding Site Of The ... 23 6.9
pdb|1A4H| Structure Of The N-Terminal Domain Of The Yeast... 23 6.9
pdb|1AM1| Atp Binding Site In The Hsp90 Molecular Chaperone 23 6.9
pdb|1GO4|E Chain E, Crystal Structure Of Mad1-Mad2 Reveals ... 22 8.9
pdb|1F2R|I Chain I, Nmr Structure Of The Heterodimeric Comp... 22 8.9
pdb|1J5X|A Chain A, Crystal Structure Of Conserved Hypothet... 22 8.9
>pdb|1HSJ|A Chain A, Sarr Mbp Fusion Structure
pdb|1HSJ|B Chain B, Sarr Mbp Fusion Structure
Length = 487
Score = 26.6 bits (57), Expect = 0.47
Identities = 19/93 (20%), Positives = 43/93 (45%), Gaps = 1/93 (1%)
Query: 3 NTTNKDYTKYSQRQLFSFLNSIKTKQKRALEKLKEIQAQKQRIKKALQ-FKALNLTENGY 61
+T K Y + + + + ++ + + E K + + + KALQ K L L
Sbjct: 395 DTKKKFNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKR 454
Query: 62 TIEEEREILARAKDTKNRLCFKSIEDFKKHCEN 94
++++ER ++ DT+ K I + +++ +N
Sbjct: 455 SLQDERTVIVYVTDTQKANIQKLISELEEYIKN 487
>pdb|1JAG|A Chain A, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|1JAG|B Chain B, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|1JAG|C Chain C, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|1JAG|D Chain D, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|1JAG|E Chain E, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|1JAG|F Chain F, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|1JAG|G Chain G, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|1JAG|H Chain H, Crystal Structure Of Human Deoxyguanosine Kinase
Length = 241
Score = 24.6 bits (52), Expect = 1.8
Identities = 17/49 (34%), Positives = 25/49 (50%), Gaps = 4/49 (8%)
Query: 16 QLFSFLNSIKTKQKRALEKL----KEIQAQKQRIKKALQFKALNLTENG 60
Q FSFL+ +K + + EKL K +Q ++ + A NL ENG
Sbjct: 75 QTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENG 123
>pdb|1KIJ|A Chain A, Crystal Structure Of The 43k Atpase Domain Of Thermus
Thermophilus Gyrase B In Complex With Novobiocin
pdb|1KIJ|B Chain B, Crystal Structure Of The 43k Atpase Domain Of Thermus
Thermophilus Gyrase B In Complex With Novobiocin
Length = 390
Score = 23.9 bits (50), Expect = 3.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 33 EKLKEIQAQKQRIKKALQFKALNLTENGYTIEEEREIL 70
E+L EI + RI KA+ KAL + + RE++
Sbjct: 353 ERLLEILEENPRIAKAVYEKALRAAQAREAARKARELV 390
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
Length = 460
Score = 23.5 bits (49), Expect = 4.0
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 35 LKEIQAQKQRIKKALQFKALNLTENGYTIEEERE 68
L +I+A ++ +++ +LNL E +++EEE +
Sbjct: 401 LDKIEALQRHENESVYKASLNLIEKYFSVEEEED 434
>pdb|1A6J|B Chain B, Nitrogen Regulatory Bacterial Protein Iia-Nitrogen
pdb|1A6J|A Chain A, Nitrogen Regulatory Bacterial Protein Iia-Nitrogen
Length = 163
Score = 23.1 bits (48), Expect = 5.2
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 5 TNKDYTKYSQRQLFSFLNSIKTK-------QKRALEKLKEIQAQKQRIKKALQFKAL 54
TN D T QL S LN T+ +KRALE + E+ A++ + + F+A+
Sbjct: 2 TNNDTTL----QLSSVLNRECTRSRVHCQSKKRALEIISELAAKQLSLPPQVVFEAI 54
>pdb|1AH8|B Chain B, Structure Of The Orthorhombic Form Of The N-Terminal
Domain Of The Yeast Hsp90 Chaperone
pdb|1AH8|A Chain A, Structure Of The Orthorhombic Form Of The N-Terminal
Domain Of The Yeast Hsp90 Chaperone
pdb|1AH6| Structure Of The Tetragonal Form Of The N-Terminal Domain Of The
Yeast Hsp90 Chaperone
Length = 220
Score = 22.7 bits (47), Expect = 6.9
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 67 REILARAKDTKNRLCFKSIEDFKK 90
RE+++ A D +++ +KS+ D K+
Sbjct: 32 RELISNASDALDKIRYKSLSDPKQ 55
>pdb|1AMW| Adp Binding Site In The Hsp90 Molecular Chaperone
Length = 214
Score = 22.7 bits (47), Expect = 6.9
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 67 REILARAKDTKNRLCFKSIEDFKK 90
RE+++ A D +++ +KS+ D K+
Sbjct: 32 RELISNASDALDKIRYKSLSDPKQ 55
>pdb|1BGQ| Radicicol Bound To The Atp Binding Site Of The N-Terminal Domain
Of The Yeast Hsp90 Chaperone
Length = 225
Score = 22.7 bits (47), Expect = 6.9
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 67 REILARAKDTKNRLCFKSIEDFKK 90
RE+++ A D +++ +KS+ D K+
Sbjct: 43 RELISNASDALDKIRYKSLSDPKQ 66
>pdb|1A4H| Structure Of The N-Terminal Domain Of The Yeast Hsp90 Chaperone
In Complex With Geldanamycin
Length = 230
Score = 22.7 bits (47), Expect = 6.9
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 67 REILARAKDTKNRLCFKSIEDFKK 90
RE+++ A D +++ +KS+ D K+
Sbjct: 42 RELISNASDALDKIRYKSLSDPKQ 65
>pdb|1AM1| Atp Binding Site In The Hsp90 Molecular Chaperone
Length = 213
Score = 22.7 bits (47), Expect = 6.9
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 67 REILARAKDTKNRLCFKSIEDFKK 90
RE+++ A D +++ +KS+ D K+
Sbjct: 31 RELISNASDALDKIRYKSLSDPKQ 54
>pdb|1GO4|E Chain E, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|F Chain F, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|G Chain G, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|H Chain H, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20
Length = 100
Score = 22.3 bits (46), Expect = 8.9
Identities = 11/43 (25%), Positives = 22/43 (50%)
Query: 8 DYTKYSQRQLFSFLNSIKTKQKRALEKLKEIQAQKQRIKKALQ 50
DY + + L LN ++R E ++QA+ +R++ L+
Sbjct: 50 DYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92
>pdb|1F2R|I Chain I, Nmr Structure Of The Heterodimeric Complex Between Cad
Domains Of Cad And Icad
Length = 100
Score = 22.3 bits (46), Expect = 8.9
Identities = 13/47 (27%), Positives = 24/47 (50%)
Query: 31 ALEKLKEIQAQKQRIKKALQFKALNLTENGYTIEEEREILARAKDTK 77
+LE+L+ + I K+L L L E+G ++++ L +TK
Sbjct: 38 SLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLPSNTK 84
>pdb|1J5X|A Chain A, Crystal Structure Of Conserved Hypothetical Protein
(Tm0813) From Thermotoga Maritima At 1.8 A Resolution
Length = 342
Score = 22.3 bits (46), Expect = 8.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 35 LKEIQAQKQRIKKALQFKALNLTENGYTIEEEREI 69
LKEI QK +KK + LNL + E ++ +
Sbjct: 17 LKEITDQKNELKKFFENFVLNLEKTEIFSEIQKNL 51
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.129 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,347
Number of Sequences: 13198
Number of extensions: 14218
Number of successful extensions: 63
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 13
length of query: 95
length of database: 2,899,336
effective HSP length: 71
effective length of query: 24
effective length of database: 1,962,278
effective search space: 47094672
effective search space used: 47094672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)