BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645512|ref|NP_207687.1| conserved hypothetical
protein [Helicobacter pylori 26695]
         (88 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1DFV|B  Chain B, Crystal Structure Of Human Neutrophil G...    25  1.4
pdb|1QQS|A  Chain A, Neutrophil Gelatinase Associated Lipoca...    25  1.4
pdb|1NGL|A  Chain A, Human Neutrophil Gelatinase-Associated ...    25  1.4
pdb|1I60|A  Chain A, Structural Genomics, Ioli Protein >gi|2...    24  3.2
pdb|2MOB|A  Chain A, Methane Monooxygenase Component B             23  4.2
pdb|1PVC|3  Chain 3, Mol_id: 1; Molecule: Poliovirus Type 3,...    23  5.5
pdb|1I1E|A  Chain A, Crystal Structure Of Clostridium Botuli...    23  5.5
pdb|1VBB|3  Chain 3, Poliovirus (Type 3, Sabin Strain) (P3SA...    23  5.5
pdb|1GT7|A  Chain A, L-Rhamnulose-1-Phosphate Aldolase From ...    22  9.4

>pdb|1DFV|B Chain B, Crystal Structure Of Human Neutrophil Gelatinase
          Associated Lipocalin Monomer
 pdb|1DFV|A Chain A, Crystal Structure Of Human Neutrophil Gelatinase
          Associated Lipocalin Monomer
          Length = 177

 Score = 25.0 bits (53), Expect = 1.4
 Identities = 9/17 (52%), Positives = 11/17 (63%)

Query: 37 KEPLDPQFQDHALKGKW 53
          K PL   FQD+  +GKW
Sbjct: 15 KVPLQQNFQDNQFQGKW 31



>pdb|1QQS|A Chain A, Neutrophil Gelatinase Associated Lipocalin Homodimer
          Length = 174

 Score = 25.0 bits (53), Expect = 1.4
 Identities = 9/17 (52%), Positives = 11/17 (63%)

Query: 37 KEPLDPQFQDHALKGKW 53
          K PL   FQD+  +GKW
Sbjct: 12 KVPLQQNFQDNQFQGKW 28



>pdb|1NGL|A Chain A, Human Neutrophil Gelatinase-Associated Lipocalin
          (Hngal), Regularised Average Nmr Structure
          Length = 179

 Score = 25.0 bits (53), Expect = 1.4
 Identities = 9/17 (52%), Positives = 11/17 (63%)

Query: 37 KEPLDPQFQDHALKGKW 53
          K PL   FQD+  +GKW
Sbjct: 16 KVPLQQNFQDNQFQGKW 32



>pdb|1I60|A Chain A, Structural Genomics, Ioli Protein
 pdb|1I6N|A Chain A, 1.8 A Crystal Structure Of Ioli Protein With A Binding
          Zinc Atom
          Length = 278

 Score = 23.9 bits (50), Expect = 3.2
 Identities = 15/46 (32%), Positives = 23/46 (49%), Gaps = 2/46 (4%)

Query: 32 LTLRKKEPLDPQFQDHALKGKWKPFRECHIKPDVL--LVYLVKDDE 75
          + +R  + L    +DH+L    + F+  HIKP  L  LV+    DE
Sbjct: 31 IEIRTXDKLPEYLKDHSLDDLAEYFQTHHIKPLALNALVFFNNRDE 76



>pdb|2MOB|A Chain A, Methane Monooxygenase Component B
          Length = 138

 Score = 23.5 bits (49), Expect = 4.2
 Identities = 10/24 (41%), Positives = 14/24 (57%)

Query: 28 NEVILTLRKKEPLDPQFQDHALKG 51
          N V+L L K + +D   +D  LKG
Sbjct: 36 NAVVLVLMKSDEIDAIIEDIVLKG 59



>pdb|1PVC|3 Chain 3, Mol_id: 1; Molecule: Poliovirus Type 3, Sabin Strain;
           Chain: 0, 1, 2, 3, 4; Other_details: P3SABIN
           P3LEON12A(1)B
 pdb|1PIV|3 Chain 3, Poliovirus (Type 3, Sabin Strain) (P3SABIN; P3LEON12A(1)B)
           COMPLEXED WITH DISOXARIL (WIN 51711)
          Length = 238

 Score = 23.1 bits (48), Expect = 5.5
 Identities = 14/52 (26%), Positives = 25/52 (47%), Gaps = 1/52 (1%)

Query: 1   MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGK 52
           M+ LNL+ + +   D   +   D + L++ IL L      DP+   H + G+
Sbjct: 52  MIPLNLESTKRNTMDMYRVTLSDSADLSQPILCLSLSPAFDPRL-SHTMLGE 102



>pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
           Complexed With Doxorubicin
 pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
 pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
           Complexed With A Trisaccharide
          Length = 1290

 Score = 23.1 bits (48), Expect = 5.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 18  LLNGFDDSVLNEVILTLRKKE 38
           + N ++  +LN +IL LR K+
Sbjct: 851 MFNKYNSEILNNIILNLRYKD 871



>pdb|1VBB|3 Chain 3, Poliovirus (Type 3, Sabin Strain) (P3SABIN, P3LEON12A(1)B)
           COMPLEXED WITH R80633
 pdb|1VBC|3 Chain 3, Poliovirus (Type 3, Sabin Strain) (P3SABIN, P3LEON12A(1)B)
           COMPLEXED WITH R77975
 pdb|1VBE|3 Chain 3, Poliovirus (Type 3, Sabin Strain, Mutant 242-H2) Complexed
           With R78206
 pdb|1VBA|3 Chain 3, Poliovirus (Type 3, Sabin Strain) (P3SABIN, P3LEON12A(1)B)
           COMPLEXED WITH R78206
          Length = 235

 Score = 23.1 bits (48), Expect = 5.5
 Identities = 14/52 (26%), Positives = 25/52 (47%), Gaps = 1/52 (1%)

Query: 1   MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGK 52
           M+ LNL+ + +   D   +   D + L++ IL L      DP+   H + G+
Sbjct: 52  MIPLNLESTKRNTMDMYRVTLSDSADLSQPILCLSLSPAFDPRL-SHTMLGE 102



>pdb|1GT7|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|B Chain B, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|C Chain C, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|D Chain D, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|E Chain E, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|F Chain F, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|G Chain G, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|H Chain H, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|I Chain I, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|J Chain J, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|K Chain K, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|L Chain L, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|M Chain M, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|N Chain N, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|O Chain O, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|P Chain P, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|Q Chain Q, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|R Chain R, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|S Chain S, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|T Chain T, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
          Length = 274

 Score = 22.3 bits (46), Expect = 9.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 48  ALKGKWKPFRECHIKPDVLLVYLVKDDELILLR 80
           A  GK +    CH    + L Y++++D  +  R
Sbjct: 131 ATNGKDRVIMHCHATNLIALTYVLENDTAVFTR 163



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.324    0.145    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,184
Number of Sequences: 13198
Number of extensions: 17676
Number of successful extensions: 61
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 9
length of query: 88
length of database: 2,899,336
effective HSP length: 64
effective length of query: 24
effective length of database: 2,054,664
effective search space: 49311936
effective search space used: 49311936
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)