BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645513|ref|NP_207688.1| hypothetical protein
[Helicobacter pylori 26695]
(125 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyr... 29 0.14
pdb|1PMI| Human Rantes 29 0.18
pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Bind... 27 0.70
pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodo... 27 0.91
pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase... 27 0.91
pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase 27 0.91
pdb|1CI6|A Chain A, Transcription Factor Atf4-CEBP BETA BZI... 27 0.91
pdb|1HX1|B Chain B, Crystal Structure Of A Bag Domain In Co... 26 1.2
pdb|1H6K|C Chain C, Nuclear Cap Binding Complex >gi|1598838... 25 2.0
pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoen... 25 2.0
pdb|1I6V|D Chain D, Thermus Aquaticus Core Rna Polymerase-R... 25 2.0
pdb|1HQM|D Chain D, Crystal Structure Of Thermus Aquaticus ... 25 2.0
pdb|1BQB|A Chain A, Aureolysin, Staphylococcus Aureus Metal... 25 2.0
pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Confor... 25 2.6
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Acti... 25 2.6
pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:... 25 2.6
pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near ... 25 2.6
pdb|1BF5|A Chain A, Stat-1 Dna Complex 25 2.6
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 25 3.5
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 25 3.5
pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication In... 25 3.5
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 25 3.5
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 24 4.5
pdb|1FOU|A Chain A, Connector Protein From Bacteriophage Ph... 24 4.5
pdb|1M1J|B Chain B, Crystal Structure Of Native Chicken Fib... 24 4.5
pdb|1HY3|A Chain A, Crystal Structure Of Human Estrogen Sul... 24 5.9
pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonucle... 24 5.9
pdb|1MJH|B Chain B, Structure-Based Assignment Of The Bioch... 23 7.7
pdb|1JI6|A Chain A, Crystal Structure Of The Insecticidal B... 23 7.7
>pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyrus Kandleri
Length = 404
Score = 29.3 bits (64), Expect = 0.14
Identities = 16/75 (21%), Positives = 40/75 (53%)
Query: 41 EKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDVGNKE 100
E+ KE+ K ++ ++++ + E L+K+ + HEI + E ++A+R + +
Sbjct: 298 ERRRKEIPKVEKLIEEELSTVEEELEKLKERRLVADVAKSLHEIKDRELERALRRLKTGD 357
Query: 101 TDLIVEDFSSYSNER 115
+ +++DF+ +R
Sbjct: 358 PENVLQDFAEAYTKR 372
>pdb|1PMI| Human Rantes
Length = 440
Score = 28.9 bits (63), Expect = 0.18
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 30 KKMQNDRISFKEKMAKELEKRD---QNFKDKIDALNELLQKISQAF 72
K M D K++ AK LE+ D Q FKD L EL+Q++++ F
Sbjct: 207 KLMNTDDDVIKQQTAKLLERTDREPQVFKDIDSRLPELIQRLNKQF 252
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 26.9 bits (58), Expect = 0.70
Identities = 19/82 (23%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 8 KDYTK-YSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKR---DQNFKDKIDALNE 63
+D+T+ + + L + I ++ + + K+Q + KEK+A++ ++R D D+ D + E
Sbjct: 611 RDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLE 670
Query: 64 -----LLQKISQAFDDKRDCCL 80
L +K+ A ++++ L
Sbjct: 671 EQIERLQEKVESAQSEQKNLFL 692
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 26.6 bits (57), Expect = 0.91
Identities = 15/47 (31%), Positives = 22/47 (45%)
Query: 47 LEKRDQNFKDKIDALNELLQKISQAFDDKRDCCLGHEIPNIETQQAM 93
L+ D+ K+K D L L + I+ DD + NI TQ+ M
Sbjct: 116 LDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMM 162
>pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|N Chain N, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 1524
Score = 26.6 bits (57), Expect = 0.91
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 29 IKKMQNDRISFKEKMAKELEKRDQNFKDKI-DALNELL 65
+KKM+ I+ K A+ + +R ++ KD++ DAL E++
Sbjct: 658 LKKMEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVI 695
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 26.6 bits (57), Expect = 0.91
Identities = 14/39 (35%), Positives = 19/39 (47%)
Query: 86 NIETQQAMRDVGNKETDLIVEDFSSYSNERKRALGVEAQ 124
NI Q +RDVG ++ D+ D N LGV+ Q
Sbjct: 98 NIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQ 136
>pdb|1CI6|A Chain A, Transcription Factor Atf4-CEBP BETA BZIP HETERODIMER
Length = 63
Score = 26.6 bits (57), Expect = 0.91
Identities = 14/61 (22%), Positives = 34/61 (54%), Gaps = 13/61 (21%)
Query: 27 RKIKKMQNDRIS---FKEKM----------AKELEKRDQNFKDKIDALNELLQKISQAFD 73
+K+KKM+ ++ + +++K KELEK+++ K++ D+L + +Q + +
Sbjct: 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61
Query: 74 D 74
+
Sbjct: 62 E 62
>pdb|1HX1|B Chain B, Crystal Structure Of A Bag Domain In Complex With The
Hsc70 Atpase Domain
Length = 114
Score = 26.2 bits (56), Expect = 1.2
Identities = 21/79 (26%), Positives = 34/79 (42%), Gaps = 4/79 (5%)
Query: 42 KMAKELEKRDQNFKDKIDALNELLQKISQAFDDK----RDCCLGHEIPNIETQQAMRDVG 97
K K LEK + D+++ LN+ L I Q F K C +Q M+ +
Sbjct: 11 KKLKHLEKSVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILE 70
Query: 98 NKETDLIVEDFSSYSNERK 116
+T ++ E+F +RK
Sbjct: 71 EIDTLILPENFKDSRLKRK 89
>pdb|1H6K|C Chain C, Nuclear Cap Binding Complex
pdb|1H6K|B Chain B, Nuclear Cap Binding Complex
pdb|1H6K|A Chain A, Nuclear Cap Binding Complex
Length = 757
Score = 25.4 bits (54), Expect = 2.0
Identities = 13/58 (22%), Positives = 36/58 (61%), Gaps = 5/58 (8%)
Query: 8 KDYTK-YSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKE----LEKRDQNFKDKIDA 60
+D+T+ + + L + I ++ + + K+Q + KEK+A++ LE++ + ++K+++
Sbjct: 611 RDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAKEKLARQHDGVLEEQIERLQEKVES 668
>pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|M Chain M, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|D Chain D, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 1524
Score = 25.4 bits (54), Expect = 2.0
Identities = 12/38 (31%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
Query: 29 IKKMQNDRISFKEKMAKELEKRDQNFKDKI-DALNELL 65
+KKM+ + K A+ + +R ++ KD++ DAL E++
Sbjct: 658 LKKMEEKAFAPNVKAARRMLERQRDIKDEVWDALEEVI 695
>pdb|1I6V|D Chain D, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
Length = 1264
Score = 25.4 bits (54), Expect = 2.0
Identities = 12/38 (31%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
Query: 29 IKKMQNDRISFKEKMAKELEKRDQNFKDKI-DALNELL 65
+KKM+ + K A+ + +R ++ KD++ DAL E++
Sbjct: 398 LKKMEEKAFAPNVKAARRMLERQRDIKDEVWDALEEVI 435
>pdb|1HQM|D Chain D, Crystal Structure Of Thermus Aquaticus Core Rna
Polymerase- Includes Complete Structure With Side-Chains
(Except For Disordered Regions)-Further Refined From
Original Deposition-Contains Additional Sequence
Information
Length = 1265
Score = 25.4 bits (54), Expect = 2.0
Identities = 12/38 (31%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
Query: 29 IKKMQNDRISFKEKMAKELEKRDQNFKDKI-DALNELL 65
+KKM+ + K A+ + +R ++ KD++ DAL E++
Sbjct: 398 LKKMEEKAFAPNVKAARRMLERQRDIKDEVWDALEEVI 435
>pdb|1BQB|A Chain A, Aureolysin, Staphylococcus Aureus Metalloproteinase
Length = 301
Score = 25.4 bits (54), Expect = 2.0
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 34 NDRISFKEKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCLGHEI--PNIETQQ 91
ND ++ + + + +KD+ ALNE + F D D +G ++ P E
Sbjct: 139 NDVVAHEITHGVTQQTANLEYKDQSGALNESFSDVFGYFVDDEDFLMGEDVYTPGKE-GD 197
Query: 92 AMRDVGNKE 100
A+R + N E
Sbjct: 198 ALRSMSNPE 206
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 25.0 bits (53), Expect = 2.6
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 63 ELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDVGNKETDLIVEDFSS 110
+L+++ + AFD K++C + E + + G++ T IV D S+
Sbjct: 19 KLMKEQTAAFDGKKNCWVPDEKEGFASAEIQSSKGDEITVKIVADSST 66
>pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1B7T|A Chain A, Myosin Digested By Papain
Length = 835
Score = 25.0 bits (53), Expect = 2.6
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 63 ELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDVGNKETDLIVEDFSS 110
+L+++ + AFD K++C + E + + G++ T IV D S+
Sbjct: 19 KLMKEQTAAFDGKKNCWVPDEKEGFASAEIQSSKGDEITVKIVADSST 66
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 831
Score = 25.0 bits (53), Expect = 2.6
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 63 ELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDVGNKETDLIVEDFSS 110
+L+++ + AFD K++C + E + + G++ T IV D S+
Sbjct: 15 KLMKEQTAAFDGKKNCWVPDEKEGFASAEIQSSKGDEITVKIVADSST 62
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 25.0 bits (53), Expect = 2.6
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 63 ELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDVGNKETDLIVEDFSS 110
+L+++ + AFD K++C + E + + G++ T IV D S+
Sbjct: 14 KLMKEQTAAFDGKKNCWVPDEKEGFASAEIQSSKGDEITVKIVADSST 61
>pdb|1BF5|A Chain A, Stat-1 Dna Complex
Length = 545
Score = 25.0 bits (53), Expect = 2.6
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 24/80 (30%)
Query: 45 KELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRD-----VGNK 99
KEL+ + +N KDK+ C+ HEI ++E Q D + N+
Sbjct: 5 KELDSKVRNVKDKV-------------------MCIEHEIKSLEDLQDEYDFKCKTLQNR 45
Query: 100 ETDLIVEDFSSYSNERKRAL 119
E L+ + + N+RK +
Sbjct: 46 EHLLLKKMYLMLDNKRKEVV 65
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 24.6 bits (52), Expect = 3.5
Identities = 18/84 (21%), Positives = 42/84 (49%), Gaps = 12/84 (14%)
Query: 21 LIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNE-------LLQKISQAFD 73
++H+++RK ++M + ++ K+L ++ +N D++ L E LQ+ Q
Sbjct: 505 MLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEN--DRVQLLKEQERTLALKLQEQEQLLK 562
Query: 74 D---KRDCCLGHEIPNIETQQAMR 94
+ K + +EI +++T+ R
Sbjct: 563 EGFQKESRIMKNEIQDLQTKMRRR 586
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 24.6 bits (52), Expect = 3.5
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 6 AKKDYTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA----- 60
A K + KQL + + L++K+K +++ + E + EK + K DA
Sbjct: 27 ADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVA 86
Query: 61 -LNELLQKISQAFD 73
LN +Q + + D
Sbjct: 87 SLNRRIQLVEEELD 100
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 24.6 bits (52), Expect = 3.5
Identities = 13/75 (17%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 8 KDYTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQ- 66
K++ +K++ + + + + +++++ K K + LE++++ +DK+ + E +
Sbjct: 180 KEFNLELRKEVIDYLLENTKNVREIEGKIKLIKLKGFEGLERKERKERDKLXQIVEFVAN 239
Query: 67 ----KISQAFDDKRD 77
K+ DKR+
Sbjct: 240 YYAVKVEDILSDKRN 254
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 24.6 bits (52), Expect = 3.5
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 6 AKKDYTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNEL- 64
A K + KQL + + L++K+K +++ + E + EK + K DA ++
Sbjct: 27 ADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVA 86
Query: 65 -LQKISQAFDDKRD 77
L + Q F+++ D
Sbjct: 87 SLNRRIQLFEEELD 100
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 24.3 bits (51), Expect = 4.5
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 14/60 (23%)
Query: 15 KKQLFNLIHQLERKI--------------KKMQNDRISFKEKMAKELEKRDQNFKDKIDA 60
K++L ++H++E +I KKMQ + +E++ +E R + +K+ A
Sbjct: 922 KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA 981
>pdb|1FOU|A Chain A, Connector Protein From Bacteriophage Phi29
pdb|1FOU|B Chain B, Connector Protein From Bacteriophage Phi29
pdb|1FOU|C Chain C, Connector Protein From Bacteriophage Phi29
pdb|1FOU|D Chain D, Connector Protein From Bacteriophage Phi29
pdb|1FOU|E Chain E, Connector Protein From Bacteriophage Phi29
pdb|1FOU|F Chain F, Connector Protein From Bacteriophage Phi29
pdb|1FOU|G Chain G, Connector Protein From Bacteriophage Phi29
pdb|1FOU|H Chain H, Connector Protein From Bacteriophage Phi29
pdb|1FOU|I Chain I, Connector Protein From Bacteriophage Phi29
pdb|1FOU|J Chain J, Connector Protein From Bacteriophage Phi29
pdb|1FOU|K Chain K, Connector Protein From Bacteriophage Phi29
pdb|1FOU|L Chain L, Connector Protein From Bacteriophage Phi29
Length = 309
Score = 24.3 bits (51), Expect = 4.5
Identities = 11/57 (19%), Positives = 29/57 (50%)
Query: 21 LIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRD 77
++ +L + + N+ ++FK + LEK+++ D++ + +E + F R+
Sbjct: 206 VVDKLNAQKNAVWNEMMTFKLQTNANLEKKERMVTDEVSSNDEQIDSSGTVFLKSRE 262
>pdb|1M1J|B Chain B, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|E Chain E, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1EI3|B Chain B, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|E Chain E, Crystal Structure Of Native Chicken Fibrinogen
Length = 464
Score = 24.3 bits (51), Expect = 4.5
Identities = 21/94 (22%), Positives = 35/94 (36%), Gaps = 15/94 (15%)
Query: 1 MPNTTAKKDYTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDK--- 57
+ + AK T + Q N+I K +K + D + E+E KD
Sbjct: 105 LKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDN 164
Query: 58 ------------IDALNELLQKISQAFDDKRDCC 79
ID+L++ +QK+ A + D C
Sbjct: 165 NIPSSLRVLRAVIDSLHKKIQKLENAIATQTDYC 198
>pdb|1HY3|A Chain A, Crystal Structure Of Human Estrogen Sulfotransferase V269e
Mutant In The Presence Of Paps
pdb|1HY3|B Chain B, Crystal Structure Of Human Estrogen Sulfotransferase V269e
Mutant In The Presence Of Paps
Length = 294
Score = 23.9 bits (50), Expect = 5.9
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 8 KDYTKYSKKQLFNLIHQLERKIKKMQNDRI----SFKE 41
+D + +K++ LIH LERK + DRI SF+E
Sbjct: 193 EDLKEDIRKEVIKLIHFLERKPSEELVDRIIHHTSFQE 230
>pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
pdb|1EKE|A Chain A, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
Length = 230
Score = 23.9 bits (50), Expect = 5.9
Identities = 27/84 (32%), Positives = 37/84 (43%), Gaps = 17/84 (20%)
Query: 8 KDYTKYSKKQLFNL------------IHQLERKIKKMQNDRISFKEKMAKEL-EK---RD 51
K+ Y KK L NL I+QL I + + I+ K+AK L EK RD
Sbjct: 46 KNKRAYLKKLLENLGYVEKRILEAEEINQLXNSIN-LNDIEINAFSKVAKNLIEKLNIRD 104
Query: 52 QNFKDKIDALNELLQKISQAFDDK 75
+ IDA + +K +F DK
Sbjct: 105 DEIEIYIDACSTNTKKFEDSFKDK 128
>pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function
Of Hypothetical Protein Mj0577: A Test Case Of
Structural Genomics
pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function
Of Hypothetical Protein Mj0577: A Test Case Of
Structural Genomics
Length = 162
Score = 23.5 bits (49), Expect = 7.7
Identities = 10/51 (19%), Positives = 26/51 (50%)
Query: 9 DYTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKID 59
D + K+ +F+L+ + K ++ K K+ +E + + +N K +++
Sbjct: 43 DEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKMENIKKELE 93
>pdb|1JI6|A Chain A, Crystal Structure Of The Insecticidal Bacterial Del
Endotoxin Cry3bb1 Bacillus Thuringiensis
Length = 589
Score = 23.5 bits (49), Expect = 7.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 40 KEKMAKELEKRDQNFKDKIDALN 62
K K EL+ NF+D ++ALN
Sbjct: 64 KSKALAELQGLQNNFEDYVNALN 86
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.130 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 644,628
Number of Sequences: 13198
Number of extensions: 23244
Number of successful extensions: 73
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 29
length of query: 125
length of database: 2,899,336
effective HSP length: 77
effective length of query: 48
effective length of database: 1,883,090
effective search space: 90388320
effective search space used: 90388320
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)