BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645515|ref|NP_207690.1| hypothetical protein
[Helicobacter pylori 26695]
(208 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta 31 0.091
pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta 31 0.091
pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) ... 28 0.59
pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3... 28 0.59
pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodo... 26 2.9
pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN CO... 26 3.8
pdb|1D5A|A Chain A, Crystal Structure Of An Archaebacterial... 25 6.5
pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial... 25 6.5
>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta
Length = 352
Score = 31.2 bits (69), Expect = 0.091
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 37 IMENGFDPIIYKRYLKKKETFLLFKKIAQASAFKNLKLQLKRR 79
++ NG ++Y+ L + KK+ Q AFKN +LQ+ R+
Sbjct: 27 VIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNRELQIMRK 69
>pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
Length = 350
Score = 31.2 bits (69), Expect = 0.091
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 37 IMENGFDPIIYKRYLKKKETFLLFKKIAQASAFKNLKLQLKRR 79
++ NG ++Y+ L + KK+ Q AFKN +LQ+ R+
Sbjct: 27 VIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNRELQIMRK 69
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 28.5 bits (62), Expect = 0.59
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 37 IMENGFDPIIYKRYLKKKETFLLFKKIAQASAFKNLKLQLKRR 79
++ NG ++Y+ L + KK+ Q FKN +LQ+ R+
Sbjct: 46 VIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRK 88
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
Length = 420
Score = 28.5 bits (62), Expect = 0.59
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 37 IMENGFDPIIYKRYLKKKETFLLFKKIAQASAFKNLKLQLKRR 79
++ NG ++Y+ L + KK+ Q FKN +LQ+ R+
Sbjct: 61 VIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRK 103
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 26.2 bits (56), Expect = 2.9
Identities = 11/37 (29%), Positives = 19/37 (50%)
Query: 127 YTNHLKAHLKETQKTLKALDYPFDFKTIQASVKKRAY 163
Y H + K + K + P D +T++ +V+KR Y
Sbjct: 45 YPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLY 81
>pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN COMPLEX WITH HIV-1
Tat Peptide
Length = 118
Score = 25.8 bits (55), Expect = 3.8
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 14/103 (13%)
Query: 108 KIYFTHPSYLKAFKIEEAYYTNHLKAHLKETQKTLKALDYPFDFKTIQASVKKRAYQKPV 167
++Y T S L+ K ++ + E + + +P D KT+ +K R Y
Sbjct: 13 QLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKK 72
Query: 168 V------------KKEKPPKSVNVNCEGLSDFTKKQFLKLKRA 198
+ K+ PP+S C + + K F K+K A
Sbjct: 73 LFMADLQRVFTNCKEYNPPESEYYKCANILE--KFFFSKIKEA 113
>pdb|1D5A|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok. Deposition Of Second Native Structure At 2.4
Angstro
Length = 733
Score = 25.0 bits (53), Expect = 6.5
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 17/98 (17%)
Query: 24 KLFKKVKLKRYNFIMENGFDPIIYKRYLKKKETFLLFKKIAQASAFKNLKLQLKRREIIN 83
++FKK K + + F+P IY LK KKI +++ R
Sbjct: 17 RVFKKEK-GEFKIDYDRDFEPYIYA-LLKDDSAIEDIKKITAERHGTTVRVTRAER---- 70
Query: 84 RYVSQALGDLKKGFRYAKVEHQILKIYFTHPSYLKAFK 121
+KK F VE + K+YFTHP + A +
Sbjct: 71 ---------VKKKFLGRPVE--VWKLYFTHPQDVPAIR 97
>pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok
Length = 773
Score = 25.0 bits (53), Expect = 6.5
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 17/98 (17%)
Query: 24 KLFKKVKLKRYNFIMENGFDPIIYKRYLKKKETFLLFKKIAQASAFKNLKLQLKRREIIN 83
++FKK K + + F+P IY LK KKI +++ R
Sbjct: 17 RVFKKEK-GEFKIDYDRDFEPYIYA-LLKDDSAIEDIKKITAERHGTTVRVTRAER---- 70
Query: 84 RYVSQALGDLKKGFRYAKVEHQILKIYFTHPSYLKAFK 121
+KK F VE + K+YFTHP + A +
Sbjct: 71 ---------VKKKFLGRPVE--VWKLYFTHPQDVPAIR 97
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,199,620
Number of Sequences: 13198
Number of extensions: 45904
Number of successful extensions: 72
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 66
Number of HSP's gapped (non-prelim): 9
length of query: 208
length of database: 2,899,336
effective HSP length: 84
effective length of query: 124
effective length of database: 1,790,704
effective search space: 222047296
effective search space used: 222047296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)