BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645518|ref|NP_207693.1| hydrogenase
expression/formation protein (hypB) [Helicobacter pylori 26695]
(242 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QPO|A Chain A, Quinolinate Phosphoribosyl Transferase ... 28 1.2
pdb|1J8M|F Chain F, Signal Recognition Particle Conserved G... 28 1.2
pdb|1ECM|B Chain B, P-Protein, Chorismate Mutase Domain Mol... 27 2.8
pdb|1DTZ|A Chain A, Structure Of Camel Apo-Lactoferrin Demo... 25 6.2
pdb|1TFD| Transferrin (N-Terminal Half-Molecule) 25 6.2
pdb|1JNF|A Chain A, Rabbit Serum Transferrin At 2.6 A Resol... 25 6.2
>pdb|1QPO|A Chain A, Quinolinate Phosphoribosyl Transferase (Qaprtase) Apo-
Enzyme From Mycobacterium Tuberculosis
pdb|1QPO|B Chain B, Quinolinate Phosphoribosyl Transferase (Qaprtase) Apo-
Enzyme From Mycobacterium Tuberculosis
pdb|1QPO|C Chain C, Quinolinate Phosphoribosyl Transferase (Qaprtase) Apo-
Enzyme From Mycobacterium Tuberculosis
pdb|1QPO|D Chain D, Quinolinate Phosphoribosyl Transferase (Qaprtase) Apo-
Enzyme From Mycobacterium Tuberculosis
pdb|1QPO|E Chain E, Quinolinate Phosphoribosyl Transferase (Qaprtase) Apo-
Enzyme From Mycobacterium Tuberculosis
pdb|1QPO|F Chain F, Quinolinate Phosphoribosyl Transferase (Qaprtase) Apo-
Enzyme From Mycobacterium Tuberculosis
pdb|1QPR|A Chain A, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|B Chain B, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|C Chain C, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|D Chain D, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|E Chain E, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPR|F Chain F, Quinolinate Phosphoribosyltransferase (Qaprtase) From
Mycobacterium Tuberculosis In Complex With Phthalate And
Prpcp
pdb|1QPQ|A Chain A, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|B Chain B, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|C Chain C, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|D Chain D, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|E Chain E, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPQ|F Chain F, Structure Of Quinolinic Acid Phosphoribosyltransferase
From Mycobacterium Tuberculosis: A Potential Tb Drug
Target
pdb|1QPN|A Chain A, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|B Chain B, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|C Chain C, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|D Chain D, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|E Chain E, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
pdb|1QPN|F Chain F, Quinolinate Phosphoribosyl Transferase From Mycobacterium
Tuberculosis In Complex With Ncnn
Length = 284
Score = 27.7 bits (60), Expect = 1.2
Identities = 14/46 (30%), Positives = 25/46 (53%)
Query: 177 DAVIISKADMVEVFNFRVSQVKEDMQKLKPEAPIFLMSSKDPKSLE 222
DAV+ K +++ + NF V Q + +Q+ AP ++ S SL+
Sbjct: 208 DAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQ 253
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 27.7 bits (60), Expect = 1.2
Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 15/149 (10%)
Query: 47 YVLNFMSSPGSGKTTMLENLADF---KDFKFCVVEGDLQTNRDADRLRKKGVSAHQITTG 103
YV+ + G+GKTT LA F K FK +V D+ ++L++ G G
Sbjct: 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG 158
Query: 104 EACHLEASMIEGAFDLLKDEGALEKSDFLIIENVGNLVCPSSYNLGAAMNIVLLSVPEGD 163
E + + G ++ EK + +I++ G G LL +
Sbjct: 159 EPGEKD---VVGIAKRGVEKFLSEKMEIIIVDTAG--------RHGYGEEAALLEEMKNI 207
Query: 164 DKVLKYPTMFMCADAVIISKA-DMVEVFN 191
+ +K + + DA I KA D+ FN
Sbjct: 208 YEAIKPDEVTLVIDASIGQKAYDLASKFN 236
>pdb|1ECM|B Chain B, P-Protein, Chorismate Mutase Domain Mol_id: 1; Molecule:
Endo-Oxabicyclic Transition State Analogue; Chain: A, B;
Domain: Chorismate Mutase Domain, Residues 1 - 109;
Engineered: Yes
pdb|1ECM|A Chain A, P-Protein, Chorismate Mutase Domain Mol_id: 1; Molecule:
Endo-Oxabicyclic Transition State Analogue; Chain: A, B;
Domain: Chorismate Mutase Domain, Residues 1 - 109;
Engineered: Yes
Length = 109
Score = 26.6 bits (57), Expect = 2.8
Identities = 16/48 (33%), Positives = 25/48 (51%), Gaps = 2/48 (4%)
Query: 85 RDADRLRKKGVSAHQITTGEACHLEASMIEGAFDLLKDEGALEKSDFL 132
RD DR ++ + IT G+A HL+A I F L+ ++ L + L
Sbjct: 47 RDIDR--ERDLLERLITLGKAHHLDAHYITRLFQLIIEDSVLTQQALL 92
>pdb|1DTZ|A Chain A, Structure Of Camel Apo-Lactoferrin Demonstrates Its Dual
Role In Sequestering And Transporting Ferric Ions
Simultaneously:crystal Structure Of Camel
Apo-Lactoferrin At 2.6a Resolution.
pdb|1I6Q|A Chain A, Formation Of A Protein Intermediate And Its Trapping By
The Simultaneous Crystallization Process: Crystal
Structure Of An Iron-Saturated Intermediate In The Fe3+
Binding Pathway Of Camel Lactoferrin At 2.7 Resolution
Length = 689
Score = 25.4 bits (54), Expect = 6.2
Identities = 19/71 (26%), Positives = 30/71 (41%), Gaps = 2/71 (2%)
Query: 167 LKYPTMFMCADAVIISKADMVEVFNFRVSQVKEDMQKLKPEAPIFLMSSKDPKSLEDFKN 226
+K + F C A+ KAD V + V D KL+P A + P++ +
Sbjct: 37 VKKTSRFECIQAISTEKADAVTLDGGLVYDAGLDPYKLRPIAAEVYGTENQPQT--HYYA 94
Query: 227 FLLEKKRENYQ 237
+ KK N+Q
Sbjct: 95 VAIAKKGTNFQ 105
>pdb|1TFD| Transferrin (N-Terminal Half-Molecule)
Length = 304
Score = 25.4 bits (54), Expect = 6.2
Identities = 21/81 (25%), Positives = 35/81 (42%), Gaps = 4/81 (4%)
Query: 159 VPEGDDKVL--KYPTMFMCADAVIISKADMVEVFNFRVSQVKEDMQKLKPEAPIFLMSSK 216
+PE +++ K + C A+ +AD V + V + LKP F S +
Sbjct: 30 LPEDGPRIICVKKASYLDCIKAIAAHEADAVTLDAGLVHEAGLTPNNLKPVVAEFYGSKE 89
Query: 217 DPKSLEDFKNFLLEKKRENYQ 237
+PK+ + L KK N+Q
Sbjct: 90 NPKTF--YYAVALVKKGSNFQ 108
>pdb|1JNF|A Chain A, Rabbit Serum Transferrin At 2.6 A Resolution
Length = 676
Score = 25.4 bits (54), Expect = 6.2
Identities = 21/81 (25%), Positives = 35/81 (42%), Gaps = 4/81 (4%)
Query: 159 VPEGDDKVL--KYPTMFMCADAVIISKADMVEVFNFRVSQVKEDMQKLKPEAPIFLMSSK 216
+PE +++ K + C A+ +AD V + V + LKP F S +
Sbjct: 30 LPEDGPRIICVKKASYLDCIKAIAAHEADAVTLDAGLVHEAGLTPNNLKPVVAEFYGSKE 89
Query: 217 DPKSLEDFKNFLLEKKRENYQ 237
+PK+ + L KK N+Q
Sbjct: 90 NPKTF--YYAVALVKKGSNFQ 108
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.133 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,311,609
Number of Sequences: 13198
Number of extensions: 51144
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 6
length of query: 242
length of database: 2,899,336
effective HSP length: 86
effective length of query: 156
effective length of database: 1,764,308
effective search space: 275232048
effective search space used: 275232048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)