BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645520|ref|NP_207695.1| hypothetical protein
[Helicobacter pylori 26695]
(99 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JUH|A Chain A, Crystal Structure Of Quercetin 2,3-Diox... 27 0.27
pdb|1VSG|A Chain A, Variant Surface Glycoprotein (N-Termina... 25 1.8
pdb|1JPF|A Chain A, Crystal Structure Of The Lcmv Peptidic ... 25 1.8
pdb|1HOC|A Chain A, Murine Class I Major Histocompatibility... 25 1.8
pdb|1JUF|A Chain A, Structure Of Minor Histocompatibility A... 25 1.8
pdb|1QLF|A Chain A, Mhc Class I H-2db Complexed With Glycop... 25 1.8
pdb|1LD9|A Chain A, The Three-Dimensional Structure Of An H... 25 1.8
pdb|1LDP|H Chain H, Crystal Structure Of Murine Mhc Class I... 25 1.8
pdb|1CE6|A Chain A, Mhc Class I H-2db Complexed With A Send... 25 1.8
pdb|1INQ|A Chain A, Structure Of Minor Histocompatibility A... 25 1.8
pdb|1BZ9|A Chain A, Crystal Structure Of Murine Class I Mhc... 25 1.8
pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase C... 24 2.3
pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus 24 2.3
pdb|1A0K| Profilin I From Arabidopsis Thaliana 23 5.1
pdb|1K3P|A Chain A, Three Dimensional Structure Analysis Of... 23 5.1
pdb|3NUL| Profilin I From Arabidopsis Thaliana 23 5.1
>pdb|1JUH|A Chain A, Crystal Structure Of Quercetin 2,3-Dioxygenase
pdb|1JUH|B Chain B, Crystal Structure Of Quercetin 2,3-Dioxygenase
pdb|1JUH|C Chain C, Crystal Structure Of Quercetin 2,3-Dioxygenase
pdb|1JUH|D Chain D, Crystal Structure Of Quercetin 2,3-Dioxygenase
pdb|1GQG|A Chain A, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Diethyldithiocarbamate
pdb|1GQG|B Chain B, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Diethyldithiocarbamate
pdb|1GQG|C Chain C, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Diethyldithiocarbamate
pdb|1GQG|D Chain D, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Diethyldithiocarbamate
pdb|1GQH|A Chain A, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Kojic Acid
pdb|1GQH|B Chain B, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Kojic Acid
pdb|1GQH|C Chain C, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Kojic Acid
pdb|1GQH|D Chain D, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Kojic Acid
Length = 350
Score = 27.3 bits (59), Expect = 0.27
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 45 PGAISVQVLEGKIVFEVGD 63
PGA + QV EG++V ++GD
Sbjct: 271 PGACAFQVQEGRVVVQIGD 289
>pdb|1VSG|A Chain A, Variant Surface Glycoprotein (N-Terminal Domain)
pdb|1VSG|B Chain B, Variant Surface Glycoprotein (N-Terminal Domain)
Length = 364
Score = 24.6 bits (52), Expect = 1.8
Identities = 11/37 (29%), Positives = 23/37 (61%), Gaps = 1/37 (2%)
Query: 60 EVGDEKIEMPKGALISLEAQVLHRLDALENSVIRLSL 96
+V +E + PKGAL +L+A ++ + ++ +R S+
Sbjct: 16 QVSEELDDQPKGALFTLQA-AASKIQKMRDAALRASI 51
>pdb|1JPF|A Chain A, Crystal Structure Of The Lcmv Peptidic Epitope Gp276 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1JPG|A Chain A, Crystal Structure Of The Lcmv Peptidic Epitope Np396 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1FG2|A Chain A, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1FG2|D Chain D, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1FG2|G Chain G, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1FG2|J Chain J, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
Length = 281
Score = 24.6 bits (52), Expect = 1.8
Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
Query: 6 FLEGVCFEKLHIEVLNENSSHKEIRICMPKGAVMDKHKAPGAISVQ 51
+LEG C E LH + N N++ +R PK V ++ G ++++
Sbjct: 160 YLEGECVEWLHRYLKNGNAT--LLRTDSPKAHVTHHPRSKGEVTLR 203
>pdb|1HOC|A Chain A, Murine Class I Major Histocompatibility Complex Consisting
Of H-2db, B2-Microglobulin, And A 9-Residue Peptide
Length = 272
Score = 24.6 bits (52), Expect = 1.8
Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
Query: 6 FLEGVCFEKLHIEVLNENSSHKEIRICMPKGAVMDKHKAPGAISVQ 51
+LEG C E LH + N N++ +R PK V ++ G ++++
Sbjct: 159 YLEGECVEWLHRYLKNGNAT--LLRTDSPKAHVTHHPRSKGEVTLR 202
>pdb|1JUF|A Chain A, Structure Of Minor Histocompatibility Antigen Peptide,
H13b, Complexed To H2-Db
Length = 276
Score = 24.6 bits (52), Expect = 1.8
Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
Query: 6 FLEGVCFEKLHIEVLNENSSHKEIRICMPKGAVMDKHKAPGAISVQ 51
+LEG C E LH + N N++ +R PK V ++ G ++++
Sbjct: 159 YLEGECVEWLHRYLKNGNAT--LLRTDSPKAHVTHHPRSKGEVTLR 202
>pdb|1QLF|A Chain A, Mhc Class I H-2db Complexed With Glycopeptide K3g
Length = 276
Score = 24.6 bits (52), Expect = 1.8
Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
Query: 6 FLEGVCFEKLHIEVLNENSSHKEIRICMPKGAVMDKHKAPGAISVQ 51
+LEG C E LH + N N++ +R PK V ++ G ++++
Sbjct: 159 YLEGECVEWLHRYLKNGNAT--LLRTDSPKAHVTHHPRSKGEVTLR 202
>pdb|1LD9|A Chain A, The Three-Dimensional Structure Of An H-2ld Peptide
Complex Explains The Unique Interaction Of Ld With
Beta2m And Peptide
pdb|1LD9|D Chain D, The Three-Dimensional Structure Of An H-2ld Peptide
Complex Explains The Unique Interaction Of Ld With
Beta2m And Peptide
Length = 268
Score = 24.6 bits (52), Expect = 1.8
Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
Query: 6 FLEGVCFEKLHIEVLNENSSHKEIRICMPKGAVMDKHKAPGAISVQ 51
+LEG C E LH + N N++ +R PK V ++ G ++++
Sbjct: 159 YLEGECVEWLHRYLKNGNAT--LLRTDSPKAHVTHHPRSKGEVTLR 202
>pdb|1LDP|H Chain H, Crystal Structure Of Murine Mhc Class I H-2ld With A
Mixture Of Bound Peptides
Length = 272
Score = 24.6 bits (52), Expect = 1.8
Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
Query: 6 FLEGVCFEKLHIEVLNENSSHKEIRICMPKGAVMDKHKAPGAISVQ 51
+LEG C E LH + N N++ +R PK V ++ G ++++
Sbjct: 159 YLEGECVEWLHRYLKNGNAT--LLRTDSPKAHVTHHPRSKGEVTLR 202
>pdb|1CE6|A Chain A, Mhc Class I H-2db Complexed With A Sendai Virus
Nucleoprotein Peptide
Length = 274
Score = 24.6 bits (52), Expect = 1.8
Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
Query: 6 FLEGVCFEKLHIEVLNENSSHKEIRICMPKGAVMDKHKAPGAISVQ 51
+LEG C E LH + N N++ +R PK V ++ G ++++
Sbjct: 159 YLEGECVEWLHRYLKNGNAT--LLRTDSPKAHVTHHPRSKGEVTLR 202
>pdb|1INQ|A Chain A, Structure Of Minor Histocompatibility Antigen Peptide,
H13a, Complexed To H2-Db
Length = 275
Score = 24.6 bits (52), Expect = 1.8
Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
Query: 6 FLEGVCFEKLHIEVLNENSSHKEIRICMPKGAVMDKHKAPGAISVQ 51
+LEG C E LH + N N++ +R PK V ++ G ++++
Sbjct: 159 YLEGECVEWLHRYLKNGNAT--LLRTDSPKAHVTHHPRSKGEVTLR 202
>pdb|1BZ9|A Chain A, Crystal Structure Of Murine Class I Mhc H2-Db Complexed
With A Synthetic Peptide P1027
Length = 277
Score = 24.6 bits (52), Expect = 1.8
Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
Query: 6 FLEGVCFEKLHIEVLNENSSHKEIRICMPKGAVMDKHKAPGAISVQ 51
+LEG C E LH + N N++ +R PK V ++ G ++++
Sbjct: 158 YLEGECVEWLHRYLKNGNAT--LLRTDSPKAHVTHHPRSKGEVTLR 201
>pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
pdb|1GL9|C Chain C, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
Length = 1054
Score = 24.3 bits (51), Expect = 2.3
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 46 GAISVQVLEGKIVFEVGDEKIEMPKGALISLEAQVLHRLDALEN 89
G SV+VL+G +V+E+ +K ++ + A + H +D + N
Sbjct: 525 GKPSVKVLDGAVVYEIPMQKY------VLMVTASIGHVVDLITN 562
>pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus
Length = 1054
Score = 24.3 bits (51), Expect = 2.3
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 46 GAISVQVLEGKIVFEVGDEKIEMPKGALISLEAQVLHRLDALEN 89
G SV+VL+G +V+E+ +K ++ + A + H +D + N
Sbjct: 525 GKPSVKVLDGAVVYEIPMQKY------VLMVTASIGHVVDLITN 562
>pdb|1A0K| Profilin I From Arabidopsis Thaliana
Length = 131
Score = 23.1 bits (48), Expect = 5.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 35 KGAVMDKHKAPGAISVQVLEGKIVFEVGDE 64
+GAV+ K PG ++++ +VF DE
Sbjct: 79 QGAVIRGKKGPGGVTIKKTNQALVFGFYDE 108
>pdb|1K3P|A Chain A, Three Dimensional Structure Analysis Of The Type Ii
Citrate Synthase From E.Coli
pdb|1K3P|B Chain B, Three Dimensional Structure Analysis Of The Type Ii
Citrate Synthase From E.Coli
Length = 426
Score = 23.1 bits (48), Expect = 5.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 45 PGAISVQVLEGKIVFEVGDEKIEMPKG 71
PG S E KI F GDE I + +G
Sbjct: 44 PGFTSTASCESKITFIDGDEGILLHRG 70
>pdb|3NUL| Profilin I From Arabidopsis Thaliana
Length = 130
Score = 23.1 bits (48), Expect = 5.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 35 KGAVMDKHKAPGAISVQVLEGKIVFEVGDE 64
+GAV+ K PG ++++ +VF DE
Sbjct: 78 QGAVIRGKKGPGGVTIKKTNQALVFGFYDE 107
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,536
Number of Sequences: 13198
Number of extensions: 16139
Number of successful extensions: 41
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 16
length of query: 99
length of database: 2,899,336
effective HSP length: 75
effective length of query: 24
effective length of database: 1,909,486
effective search space: 45827664
effective search space used: 45827664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)