BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646207|ref|NP_207696.1| acetate kinase
[Helicobacter pylori 26695]
(400 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1G99|A Chain A, An Ancient Enzyme: Acetate Kinase From ... 348 5e-97
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double M... 27 3.1
pdb|1E8E|A Chain A, Solution Structure Of Methylophilus Met... 27 4.1
pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a 27 5.3
pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein... 27 5.3
pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junct... 27 5.3
pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant 27 5.3
pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant 27 5.3
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P- ... 26 7.0
>pdb|1G99|A Chain A, An Ancient Enzyme: Acetate Kinase From Methanosarcina
Thermophila
pdb|1G99|B Chain B, An Ancient Enzyme: Acetate Kinase From Methanosarcina
Thermophila
Length = 408
Score = 348 bits (894), Expect = 5e-97
Identities = 181/401 (45%), Positives = 262/401 (65%), Gaps = 8/401 (1%)
Query: 1 MEILVLNLGSSSIKFKLFDMKENKPLASGLAEKIGEEIGQLKIKSHLHHNDQELKEKFVI 60
M++LV+N GSSS+K++L DM LA GL E+IG + + K + ++L++ +
Sbjct: 1 MKVLVINAGSSSLKYQLIDMTNESALAVGLCERIGIDNSIITQKKF---DGKKLEKLTDL 57
Query: 61 KDHASGLLMIRENLT--KMGIIKDFNQIDAIGHRVVQGGDKFHAPVLVNEKVMQEIGNLS 118
H L + + LT + G+IKD +I+A+GHRVV GG+KF L +E V + I +
Sbjct: 58 PTHKDALEEVVKALTDDEFGVIKDMGEINAVGHRVVHGGEKFTTSALYDEGVEKAIKDCF 117
Query: 119 ILAPLHNPANLAGIEFVQKAHPHIPQIAVFDTAFHATMPSYAYMYALPYELYEKYQIRHY 178
LAPLHNP N+ GI + P P + VFDTAFH TMP YAYMYALPY+LYEK+ +R Y
Sbjct: 118 ELAPLHNPPNMMGISACAEIMPGTPMVIVFDTAFHQTMPPYAYMYALPYDLYEKHGVRKY 177
Query: 179 GFHRTSHHYVAKEAAKFLNTAYEEFNAISLHLGNGSSAAAIQKGKSVDTSMGLTPLEGLI 238
GFH TSH YVA+ AA L EE I+ HLGNGSS A++ GKSV+TSMG TPLEGL
Sbjct: 178 GFHGTSHKYVAERAALMLGKPAEETKIITCHLGNGSSITAVEGGKSVETSMGFTPLEGLA 237
Query: 239 MGTRCGDIDPTVVEYTAQCANKSLEEVMKMLNHESGLKGICG--DNXRNIEARKEKGDKE 296
MGTRCG IDP +V + + + E+ ++N +SG+ G+ G ++ R+++ KG+++
Sbjct: 238 MGTRCGSIDPAIVPFLMEKEGLTTREIDTLMNKKSGVLGVSGLSNDFRDLDEAASKGNRK 297
Query: 297 AKLAFEMCAYRIKKHIGAYMVVLKKVDAIIFTGGLGENYSALRESVCEGLENLGIALCKP 356
A+LA E+ AY++KK IG Y VL DA++FT G+GEN +++R+ + GL+ +GI +
Sbjct: 298 AELALEIFAYKVKKFIGEYSAVLNGADAVVFTAGIGENSASIRKRILTGLDGIGIKIDDE 357
Query: 357 TNDNPGSGLVNLSQPDAKIQILRIPTDEELEIALQTKKVLE 397
N G +++S PDAK+++ IPT+EEL IA +TK+++E
Sbjct: 358 KNKIRGQE-IDISTPDAKVRVFVIPTNEELAIARETKEIVE 397
>pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 27.3 bits (59), Expect = 3.1
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 341 SVCEGLENLGIALCKPTNDNPGSGLVNLSQPDAK-IQIL 378
S C+ E LG+ K +D GL + PD IQIL
Sbjct: 136 SACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIQIL 174
>pdb|1E8E|A Chain A, Solution Structure Of Methylophilus Methylotrophus
Cytochrome C''. Insights Into The Structural Basis Of
Haem-Ligand Detachment
Length = 124
Score = 26.9 bits (58), Expect = 4.1
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 194 KFLNTAYEEFNAISLHLGNGSSAAAIQKGKSVDTSMGLTPLEGLIMGTRCGDIDPTVVEY 253
KF + +E S H N ++ GK++ T + PL + R DID E+
Sbjct: 38 KFKTPSGKEAACASCHTNNPANV-----GKNIVTGKEIPPLAPRVNTKRFTDIDKVEDEF 92
Query: 254 TAQC 257
T C
Sbjct: 93 TKHC 96
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 26.6 bits (57), Expect = 5.3
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 186 HYVAKEAAKFLNTAYEEFNAISLHLGNGSSAAAIQKGKSVDTSMGLTPLEGLI 238
H + K + L +A E+F I + +G G SA +I+ T +G T GL+
Sbjct: 112 HRLNKAVEELLYSAIEDFQ-IDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLL 163
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 26.6 bits (57), Expect = 5.3
Identities = 16/54 (29%), Positives = 26/54 (47%), Gaps = 3/54 (5%)
Query: 309 KKHIGAYMVVLKKVDAIIFTGGLGENYSALRESVCEGLEN---LGIALCKPTND 359
KK+ G Y + K++A I + N + E++C L+N G+ CK D
Sbjct: 197 KKYXGDYSFIKAKINANIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRD 250
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 26.6 bits (57), Expect = 5.3
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 186 HYVAKEAAKFLNTAYEEFNAISLHLGNGSSAAAIQKGKSVDTSMGLTPLEGLI 238
H + K + L +A E+F I + +G G SA +I+ T +G T GL+
Sbjct: 112 HRLNKAVEELLYSAIEDFQ-IDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLL 163
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 26.6 bits (57), Expect = 5.3
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 186 HYVAKEAAKFLNTAYEEFNAISLHLGNGSSAAAIQKGKSVDTSMGLTPLEGLI 238
H + K + L +A E+F I + +G G SA +I+ T +G T GL+
Sbjct: 112 HRLNKAVEELLYSAIEDFQ-IDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLL 163
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 26.6 bits (57), Expect = 5.3
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 186 HYVAKEAAKFLNTAYEEFNAISLHLGNGSSAAAIQKGKSVDTSMGLTPLEGLI 238
H + K + L +A E+F I + +G G SA +I+ T +G T GL+
Sbjct: 112 HRLNKAVEELLYSAIEDFQ-IDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLL 163
>pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
Length = 183
Score = 26.2 bits (56), Expect = 7.0
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 341 SVCEGLENLGIALCKPTNDNPGSGLVNLSQPD 372
S C+ E LG+ K +D GL + PD
Sbjct: 136 SACKRFEELGVKFVKKPDDGKMKGLAFIQDPD 167
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,260,159
Number of Sequences: 13198
Number of extensions: 94909
Number of successful extensions: 203
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 9
length of query: 400
length of database: 2,899,336
effective HSP length: 90
effective length of query: 310
effective length of database: 1,711,516
effective search space: 530569960
effective search space used: 530569960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)