BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645525|ref|NP_207701.1| hypothetical protein
[Helicobacter pylori 26695]
(201 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5 27 1.2
pdb|1K4Y|A Chain A, Crystal Structure Of Rabbit Liver Carbo... 26 2.8
pdb|1ACD| V32dF57H MUTANT OF MURINE ADIPOCYTE LIPID BINDI... 26 3.6
pdb|1A2D|A Chain A, Pyridoxamine Modified Murine Adipocyte ... 26 3.6
pdb|1ADL| Adipocyte Lipid-Binding Protein Complexed With ... 25 4.7
pdb|1AB0| C1gV32DF57H MUTANT OF MURINE ADIPOCYTE LIPID BI... 25 4.7
pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpa... 25 6.1
pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycini... 25 6.1
pdb|2BBV|C Chain C, Black Beetle Virus Capsid Protein (Bbv)... 25 8.0
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
Length = 473
Score = 27.3 bits (59), Expect = 1.2
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 95 LPTFNNEIAWEKYFQKLHKDLGKNTNRDYYFL---------IISKNDPKDVFINSLKGIQ 145
L +NN A YF +HK L KN + F+ ++ N+P+D FI+ I+
Sbjct: 195 LQVYNNFPALLDYFPGIHKTLLKNADYIKNFIMEKVKEHQKLLDVNNPRD-FIDCFL-IK 252
Query: 146 TLQPNNLPF 154
Q NNL F
Sbjct: 253 MEQENNLEF 261
>pdb|1K4Y|A Chain A, Crystal Structure Of Rabbit Liver Carboxylesterase In
Complex With 4-Piperidino-Piperidine
Length = 534
Score = 26.2 bits (56), Expect = 2.8
Identities = 16/54 (29%), Positives = 24/54 (43%), Gaps = 6/54 (11%)
Query: 20 LSQPLQDGRLNSSVNEE------EILNIIKDYFPIQLPKAREWWDFSFKKNDIF 67
L PL +G+L+ E I+N+ K+ P+ K D KK D+F
Sbjct: 341 LGYPLSEGKLDQKTATELLWKSYPIVNVSKELTPVATEKYLGGTDDPVKKKDLF 394
>pdb|1ACD| V32dF57H MUTANT OF MURINE ADIPOCYTE LIPID BINDING PROTEIN
Length = 131
Score = 25.8 bits (55), Expect = 3.6
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 141 LKGIQTLQPNNLPFQCKWDNNREIIQRDFDGSKNSILSALAKSVELRVY 189
+K I TL L KWD I+R DG K + + RVY
Sbjct: 80 VKSIITLDGGALVQVQKWDGKSTTIKRKRDGDKLVVEXVMKGVTSTRVY 128
>pdb|1A2D|A Chain A, Pyridoxamine Modified Murine Adipocyte Lipid Binding
Protein
pdb|1A2D|B Chain B, Pyridoxamine Modified Murine Adipocyte Lipid Binding
Protein
pdb|1A18| Phenanthroline Modified Murine Adipocyte Lipid Binding Protein
Length = 131
Score = 25.8 bits (55), Expect = 3.6
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 141 LKGIQTLQPNNLPFQCKWDNNREIIQRDFDGSKNSILSALAKSVELRVY 189
+K I TL L KWD I+R DG K + + RVY
Sbjct: 80 VKSIITLDGGALVQVQKWDGKSTTIKRKRDGDKLVVEXVMKGVTSTRVY 128
>pdb|1ADL| Adipocyte Lipid-Binding Protein Complexed With Arachidonic Acid
pdb|1LIC| Adipocyte Lipid-Binding Protein Complexed With Hexadecanesulfonic
Acid
pdb|1LIE| Adipocyte Lipid-Binding Protein Complexed With Palmitic Acid
pdb|1LID| Adipocyte Lipid-Binding Protein Complexed With Oleic Acid
pdb|1LIF| Adipocyte Lipid-Binding Protein Complexed With Stearic Acid
pdb|1LIB| Adipocyte Lipid-Binding Protein
pdb|2ANS|A Chain A, Adipocyte Lipid Binding Protein Complexed With
1-Anilino-8-Naphthalene Sulfonate
pdb|2ANS|B Chain B, Adipocyte Lipid Binding Protein Complexed With
1-Anilino-8-Naphthalene Sulfonate
pdb|1ALB| Adipocyte Lipid-Binding Protein
Length = 131
Score = 25.4 bits (54), Expect = 4.7
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 141 LKGIQTLQPNNLPFQCKWDNNREIIQRDFDGSKNSILSALAKSVELRVY 189
+K I TL L KWD I+R DG K + + RVY
Sbjct: 80 VKSIITLDGGALVQVQKWDGKSTTIKRKRDGDKLVVECVMKGVTSTRVY 128
>pdb|1AB0| C1gV32DF57H MUTANT OF MURINE ADIPOCYTE LIPID BINDING Protein At Ph
4.5
Length = 131
Score = 25.4 bits (54), Expect = 4.7
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 141 LKGIQTLQPNNLPFQCKWDNNREIIQRDFDGSKNSILSALAKSVELRVY 189
+K I TL L KWD I+R DG K + + RVY
Sbjct: 80 VKSIITLDGGALVQVQKWDGKSTTIKRKRDGDKLVVECVMKGVTSTRVY 128
>pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|B Chain B, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 315
Score = 25.0 bits (53), Expect = 6.1
Identities = 11/36 (30%), Positives = 18/36 (49%), Gaps = 3/36 (8%)
Query: 52 KAREWWDFSFKKNDIFY---PVNITTTKTADNLNGK 84
+ +EW +F K ND+FY + + D + GK
Sbjct: 77 QTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGK 112
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
Length = 476
Score = 25.0 bits (53), Expect = 6.1
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 144 IQTLQPNNLPFQC 156
I+T PNN PFQC
Sbjct: 33 IETWNPNNKPFQC 45
>pdb|2BBV|C Chain C, Black Beetle Virus Capsid Protein (Bbv) Complexed With
Duplex Rna
pdb|2BBV|A Chain A, Black Beetle Virus Capsid Protein (Bbv) Complexed With
Duplex Rna
pdb|2BBV|B Chain B, Black Beetle Virus Capsid Protein (Bbv) Complexed With
Duplex Rna
Length = 363
Score = 24.6 bits (52), Expect = 8.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 131 NDPKDVFINSLKGIQTLQPNNL 152
N+P F + L+GIQTL P N+
Sbjct: 246 NEPDFEFSDILEGIQTLPPANV 267
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.139 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,270,284
Number of Sequences: 13198
Number of extensions: 56526
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 9
length of query: 201
length of database: 2,899,336
effective HSP length: 84
effective length of query: 117
effective length of database: 1,790,704
effective search space: 209512368
effective search space used: 209512368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)