BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645526|ref|NP_207702.1| adenine specific DNA
methyltransferase (HINDIIM) [Helicobacter pylori 26695]
(379 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|2ADM|A Chain A, Adenine-N6-Dna-Methyltransferase Taqi >... 94 3e-20
pdb|1AQJ|B Chain B, Structure Of Adenine-N6-Dna-Methyltrans... 94 3e-20
pdb|1G38|A Chain A, Adenine-Specific Methyltransferase M. T... 89 1e-18
pdb|1J7L|A Chain A, Crystal Structure Of 3',5"-Aminoglycosi... 28 1.7
pdb|1L8T|A Chain A, Crystal Structure Of 3',5"-Aminoglycosi... 28 1.7
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens In... 28 2.2
pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural... 28 2.2
pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wi... 28 2.2
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In... 28 2.2
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens In... 28 2.2
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant O... 28 2.2
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wi... 28 2.2
pdb|1QJC|A Chain A, Phosphopantetheine Adenylytransferase F... 27 2.9
pdb|1GN8|A Chain A, Phosphopantetheine Adenylyltransferase ... 27 2.9
pdb|1STY| Staphylococcal Nuclease (E.C.3.1.31.1) Insertio... 27 2.9
>pdb|2ADM|A Chain A, Adenine-N6-Dna-Methyltransferase Taqi
pdb|2ADM|B Chain B, Adenine-N6-Dna-Methyltransferase Taqi
pdb|1AQI|A Chain A, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
pdb|1AQI|B Chain B, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
Length = 421
Score = 94.0 bits (232), Expect = 3e-20
Identities = 67/201 (33%), Positives = 102/201 (50%), Gaps = 31/201 (15%)
Query: 7 KTLGQVFTPKKIVDFMLTLKH--NHGSVLEPSAGDGSFLKRLKKA-------VRIEIDPK 57
++LG+V TP ++VDFM++L G VLEP+ G FL+ ++A V +EIDPK
Sbjct: 16 RSLGRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTGYRFVGVEIDPK 75
Query: 58 ICP----KNALCMDFFDYPLENQFDTIIGNPPYVKHKDIAPSTKEKLH------------ 101
+ DF + FD I+GNPPY + ++K +H
Sbjct: 76 ALDLPPWAEGILADFLLWEPGEAFDLILGNPPY---GIVGEASKYPIHVFKAVKDLYKKA 132
Query: 102 YSLFDERSNLYLFFIEKAIKHLKPKGELIFITPRDFLKSTSSVKLNEWIYKEGTITHFFE 161
+S + + NLY F+EKA++ LKP G L+F+ P +L L E++ +EG T +
Sbjct: 133 FSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK-TSVYY 191
Query: 162 LGDQKVFPNAMPNCVIFRFCK 182
LG+ VFP + V+ RF K
Sbjct: 192 LGE--VFPQKKVSAVVIRFQK 210
>pdb|1AQJ|B Chain B, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
pdb|1AQJ|A Chain A, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
Length = 421
Score = 94.0 bits (232), Expect = 3e-20
Identities = 67/201 (33%), Positives = 102/201 (50%), Gaps = 31/201 (15%)
Query: 7 KTLGQVFTPKKIVDFMLTLKH--NHGSVLEPSAGDGSFLKRLKKA-------VRIEIDPK 57
++LG+V TP ++VDFM++L G VLEP+ G FL+ ++A V +EIDPK
Sbjct: 16 RSLGRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTGYRFVGVEIDPK 75
Query: 58 ICP----KNALCMDFFDYPLENQFDTIIGNPPYVKHKDIAPSTKEKLH------------ 101
+ DF + FD I+GNPPY + ++K +H
Sbjct: 76 ALDLPPWAEGILADFLLWEPGEAFDLILGNPPY---GIVGEASKYPIHVFKAVKDLYKKA 132
Query: 102 YSLFDERSNLYLFFIEKAIKHLKPKGELIFITPRDFLKSTSSVKLNEWIYKEGTITHFFE 161
+S + + NLY F+EKA++ LKP G L+F+ P +L L E++ +EG T +
Sbjct: 133 FSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK-TSVYY 191
Query: 162 LGDQKVFPNAMPNCVIFRFCK 182
LG+ VFP + V+ RF K
Sbjct: 192 LGE--VFPQKKVSAVVIRFQK 210
>pdb|1G38|A Chain A, Adenine-Specific Methyltransferase M. Taq IDNA COMPLEX
pdb|1G38|D Chain D, Adenine-Specific Methyltransferase M. Taq IDNA COMPLEX
Length = 393
Score = 88.6 bits (218), Expect = 1e-18
Identities = 65/196 (33%), Positives = 97/196 (49%), Gaps = 31/196 (15%)
Query: 12 VFTPKKIVDFMLTLKH--NHGSVLEPSAGDGSFLKRLKKA-------VRIEIDPKICP-- 60
V TP ++VDFM++L G VLEP+ G FL+ ++A V +EIDPK
Sbjct: 1 VETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTGYRFVGVEIDPKALDLP 60
Query: 61 --KNALCMDFFDYPLENQFDTIIGNPPYVKHKDIAPSTKEKLH------------YSLFD 106
+ DF + FD I+GNPPY + ++K +H +S +
Sbjct: 61 PWAEGILADFLLWEPGEAFDLILGNPPY---GIVGEASKYPIHVFKAVKDLYKKAFSTWK 117
Query: 107 ERSNLYLFFIEKAIKHLKPKGELIFITPRDFLKSTSSVKLNEWIYKEGTITHFFELGDQK 166
+ NLY F+EKA++ LKP G L+F+ P +L L E++ +EG T + LG+
Sbjct: 118 GKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK-TSVYYLGE-- 174
Query: 167 VFPNAMPNCVIFRFCK 182
VFP + V+ RF K
Sbjct: 175 VFPQKKVSAVVIRFQK 190
>pdb|1J7L|A Chain A, Crystal Structure Of 3',5"-Aminoglycoside
Phosphotransferase Type Iiia Adp Complex
pdb|1J7L|B Chain B, Crystal Structure Of 3',5"-Aminoglycoside
Phosphotransferase Type Iiia Adp Complex
pdb|1J7U|A Chain A, Crystal Structure Of 3',5"-Aminoglycoside
Phosphotransferase Type Iiia Amppnp Complex
pdb|1J7U|B Chain B, Crystal Structure Of 3',5"-Aminoglycoside
Phosphotransferase Type Iiia Amppnp Complex
pdb|1J7I|A Chain A, Crystal Structure Of 3',5"-Aminoglycoside
Phosphotransferase Type Iiia Apoenzyme
Length = 264
Score = 28.1 bits (61), Expect = 1.7
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 66 MDFFDYPLENQFDTIIGNPPYVKHKDIAPSTKEKLHYSL-FDERSNLYLFFIEKAIKHLK 124
+D D P N D+ + Y+ + D+A E F + LY F +K K
Sbjct: 125 IDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDF-----LKTEK 179
Query: 125 PKGELIFITPRDFLKSTSSVKLNEWIYKEGTITHFFELG 163
P+ EL+F S + + K+G ++ F +LG
Sbjct: 180 PEEELVF--------SHGDLGDSNIFVKDGKVSGFIDLG 210
>pdb|1L8T|A Chain A, Crystal Structure Of 3',5"-Aminoglycoside
Phosphotransferase Type Iiia Adp Kanamycin A Complex
pdb|1L8U|A Chain A, Crystal Structure Of 3',5"-Aminoglycoside
Phosphotransferase Type Iiia Adp Neomycin B Complex
Length = 263
Score = 28.1 bits (61), Expect = 1.7
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 66 MDFFDYPLENQFDTIIGNPPYVKHKDIAPSTKEKLHYSL-FDERSNLYLFFIEKAIKHLK 124
+D D P N D+ + Y+ + D+A E F + LY F +K K
Sbjct: 124 IDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDF-----LKTEK 178
Query: 125 PKGELIFITPRDFLKSTSSVKLNEWIYKEGTITHFFELG 163
P+ EL+F S + + K+G ++ F +LG
Sbjct: 179 PEEELVF--------SHGDLGDSNIFVKDGKVSGFIDLG 209
>pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 27.7 bits (60), Expect = 2.2
Identities = 20/65 (30%), Positives = 28/65 (42%), Gaps = 2/65 (3%)
Query: 316 QCPNYDGSILALFPYNQNLDLQNLCDKLNAINWQELGFVCGGRFLFSQ--RSLENALLPK 373
Q DG I AL L+ Q + D A+ +Q GG F S+ L + P
Sbjct: 147 QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPL 206
Query: 374 DFLNL 378
D++NL
Sbjct: 207 DYINL 211
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladiu
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladiu
Length = 499
Score = 27.7 bits (60), Expect = 2.2
Identities = 20/65 (30%), Positives = 28/65 (42%), Gaps = 2/65 (3%)
Query: 316 QCPNYDGSILALFPYNQNLDLQNLCDKLNAINWQELGFVCGGRFLFSQ--RSLENALLPK 373
Q DG I AL L+ Q + D A+ +Q GG F S+ L + P
Sbjct: 147 QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPL 206
Query: 374 DFLNL 378
D++NL
Sbjct: 207 DYINL 211
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 27.7 bits (60), Expect = 2.2
Identities = 20/65 (30%), Positives = 28/65 (42%), Gaps = 2/65 (3%)
Query: 316 QCPNYDGSILALFPYNQNLDLQNLCDKLNAINWQELGFVCGGRFLFSQ--RSLENALLPK 373
Q DG I AL L+ Q + D A+ +Q GG F S+ L + P
Sbjct: 146 QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPL 205
Query: 374 DFLNL 378
D++NL
Sbjct: 206 DYINL 210
>pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
Length = 499
Score = 27.7 bits (60), Expect = 2.2
Identities = 20/65 (30%), Positives = 28/65 (42%), Gaps = 2/65 (3%)
Query: 316 QCPNYDGSILALFPYNQNLDLQNLCDKLNAINWQELGFVCGGRFLFSQ--RSLENALLPK 373
Q DG I AL L+ Q + D A+ +Q GG F S+ L + P
Sbjct: 147 QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPL 206
Query: 374 DFLNL 378
D++NL
Sbjct: 207 DYINL 211
>pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 27.7 bits (60), Expect = 2.2
Identities = 20/65 (30%), Positives = 28/65 (42%), Gaps = 2/65 (3%)
Query: 316 QCPNYDGSILALFPYNQNLDLQNLCDKLNAINWQELGFVCGGRFLFSQ--RSLENALLPK 373
Q DG I AL L+ Q + D A+ +Q GG F S+ L + P
Sbjct: 147 QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPL 206
Query: 374 DFLNL 378
D++NL
Sbjct: 207 DYINL 211
>pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 27.7 bits (60), Expect = 2.2
Identities = 20/65 (30%), Positives = 28/65 (42%), Gaps = 2/65 (3%)
Query: 316 QCPNYDGSILALFPYNQNLDLQNLCDKLNAINWQELGFVCGGRFLFSQ--RSLENALLPK 373
Q DG I AL L+ Q + D A+ +Q GG F S+ L + P
Sbjct: 147 QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPL 206
Query: 374 DFLNL 378
D++NL
Sbjct: 207 DYINL 211
>pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 27.7 bits (60), Expect = 2.2
Identities = 20/65 (30%), Positives = 28/65 (42%), Gaps = 2/65 (3%)
Query: 316 QCPNYDGSILALFPYNQNLDLQNLCDKLNAINWQELGFVCGGRFLFSQ--RSLENALLPK 373
Q DG I AL L+ Q + D A+ +Q GG F S+ L + P
Sbjct: 146 QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPL 205
Query: 374 DFLNL 378
D++NL
Sbjct: 206 DYINL 210
>pdb|1QJC|A Chain A, Phosphopantetheine Adenylytransferase From Escherichia
Coli In Complex With 4'-Phosphopantetheine
pdb|1QJC|B Chain B, Phosphopantetheine Adenylytransferase From Escherichia
Coli In Complex With 4'-Phosphopantetheine
Length = 158
Score = 27.3 bits (59), Expect = 2.9
Identities = 13/39 (33%), Positives = 20/39 (50%)
Query: 121 KHLKPKGELIFITPRDFLKSTSSVKLNEWIYKEGTITHF 159
+HL P+ E +F+ P SS + E +G +THF
Sbjct: 106 RHLMPELESVFLMPSKEWSFISSSLVKEVARHQGDVTHF 144
>pdb|1GN8|A Chain A, Phosphopantetheine Adenylyltransferase In Complex With
Mn2+ Atp From Escherichia Coli
pdb|1GN8|B Chain B, Phosphopantetheine Adenylyltransferase In Complex With
Mn2+ Atp From Escherichia Coli
pdb|1B6T|A Chain A, Phosphopantetheine Adenylyltransferase In Complex With 3'-
Dephospho-Coa From Escherichia Coli
pdb|1B6T|B Chain B, Phosphopantetheine Adenylyltransferase In Complex With 3'-
Dephospho-Coa From Escherichia Coli
Length = 159
Score = 27.3 bits (59), Expect = 2.9
Identities = 13/39 (33%), Positives = 20/39 (50%)
Query: 121 KHLKPKGELIFITPRDFLKSTSSVKLNEWIYKEGTITHF 159
+HL P+ E +F+ P SS + E +G +THF
Sbjct: 107 RHLMPELESVFLMPSKEWSFISSSLVKEVARHQGDVTHF 145
>pdb|1STY| Staphylococcal Nuclease (E.C.3.1.31.1) Insertion Mutant With
Glycine Residue Inserted In An Alpha Helix, Between
Arg126 And Lys127 (126g127) Complex With Calcium And
Inhibitor Thymidine 3',5'-Bisphosphate)
Length = 150
Score = 27.3 bits (59), Expect = 2.9
Identities = 20/67 (29%), Positives = 31/67 (45%), Gaps = 7/67 (10%)
Query: 228 DKIFKNEKYGN-LEFVTSITKRTN------ALEKMVFVNEPNDYLLQHKDSLMQRKIKKF 280
DK + +KYG L ++ + K N L K+ +V +PN+ QH + + KK
Sbjct: 77 DKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQHLRGKSEAQAKKE 136
Query: 281 NENNWFE 287
N W E
Sbjct: 137 KLNIWSE 143
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.141 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,319,878
Number of Sequences: 13198
Number of extensions: 100400
Number of successful extensions: 181
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 15
length of query: 379
length of database: 2,899,336
effective HSP length: 90
effective length of query: 289
effective length of database: 1,711,516
effective search space: 494628124
effective search space used: 494628124
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)