BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645529|ref|NP_207705.1| outer membrane protein
(omp21) [Helicobacter pylori 26695]
(529 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1ACC| Anthrax Protective Antigen 34 0.035
pdb|1OSM|A Chain A, Osmoporin (Ompk36) From Klebsiella Pneu... 32 0.23
pdb|1HB9|A Chain A, Quasi-Atomic Resolution Model Of Bacter... 27 4.3
pdb|1HQN|C Chain C, The Selenomethionine Derivative Of P3, ... 27 4.3
pdb|1GW8|B Chain B, Quasi-Atomic Resolution Model Of Bacter... 27 5.6
pdb|1GW8|C Chain C, Quasi-Atomic Resolution Model Of Bacter... 27 5.6
pdb|1KVT| Udp-Galactose 4-Epimerase Complexed With Udp-Ph... 27 5.6
pdb|1KVS| Udp-Galactose 4-Epimerase Complexed With Udp-Ph... 27 5.6
pdb|1KVQ| Udp-Galactose 4-Epimerase Complexed With Udp-Ph... 27 5.6
pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galact... 27 5.6
pdb|1A9Z| Udp-Galactose 4-Epimerase Mutant S124aY149F COM... 27 5.6
pdb|1GW8|A Chain A, Quasi-Atomic Resolution Model Of Bacter... 27 5.6
pdb|1KVR| Udp-Galactose 4-Epimerase Complexed With Udp-Ph... 27 5.6
pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli U... 27 5.6
pdb|1UDC| Structure Of Udp-Galactose-4-Epimerase Complexe... 27 5.6
pdb|1A9Y| Udp-Galactose 4-Epimerase Mutant S124aY149F COM... 27 5.6
pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By M... 27 5.6
pdb|1KVU| Udp-Galactose 4-Epimerase Complexed With Udp-Ph... 27 5.6
pdb|1HB7|A Chain A, Quasi-Atomic Resolution Model Of Bacter... 27 7.3
pdb|1OBT| Structure Of Ricin A Chain Mutant, Complex With... 27 7.3
pdb|1BR6|A Chain A, Ricin A Chain (Recombinant) Complex Wit... 27 7.3
pdb|2AAI|A Chain A, Ricin (E.C.3.2.2.22) >gi|3660105|pdb|1B... 27 7.3
pdb|1HB7|C Chain C, Quasi-Atomic Resolution Model Of Bacter... 27 7.3
pdb|1GFF|2 Chain 2, Mol_id: 1; Molecule: Bacteriophage G4 C... 27 7.3
pdb|1IFT| Ricin A-Chain (Recombinant) >gi|2914587|pdb|1IF... 27 7.3
pdb|1HB7|B Chain B, Quasi-Atomic Resolution Model Of Bacter... 27 7.3
pdb|1I5P|A Chain A, Insecticidal Crystal Protein Cry2aa 26 9.6
pdb|1JJO|C Chain C, Crystal Structure Of Mouse Neuroserpin ... 26 9.6
pdb|1FGS| Folylpolyglutamate Synthetase From Lactobacillu... 26 9.6
pdb|1JBW|A Chain A, Fpgs-Amppcp-Folate Complex >gi|15988306... 26 9.6
>pdb|1ACC| Anthrax Protective Antigen
Length = 735
Score = 34.3 bits (77), Expect = 0.035
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 155 YNEMVGSIKTLSQNISKNIFQGNNNTTSQNLSNQLSELNTASVYLTYMNSFLNA 208
+NE G+++ ++I++ F + T SQN+ NQL+ELN ++Y LNA
Sbjct: 533 FNEPNGNLQYQGKDITEFDFNFDQQT-SQNIKNQLAELNATNIYTVLDKIKLNA 585
>pdb|1OSM|A Chain A, Osmoporin (Ompk36) From Klebsiella Pneumoniae
pdb|1OSM|B Chain B, Osmoporin (Ompk36) From Klebsiella Pneumoniae
pdb|1OSM|C Chain C, Osmoporin (Ompk36) From Klebsiella Pneumoniae
Length = 342
Score = 31.6 bits (70), Expect = 0.23
Identities = 46/196 (23%), Positives = 72/196 (36%), Gaps = 39/196 (19%)
Query: 347 PWLGNFAAGNSSQVNAFNGFITKIGYKQFFG--ENKNVGLRYYGFFSYNGAGVGNGPTYN 404
P G G+ + + + + FFG + N L+Y G NG+ G G T N
Sbjct: 109 PEFGGDTYGSDNFLQSRANGVATYRNSDFFGLVDGLNFALQYQG---KNGSVSGEGATNN 165
Query: 405 QVNLLTY---GVGTDVLYNVFS------------RSFGSRSLNAG-------FFGGIQL- 441
L G GT V Y++F R+ L G + GG++
Sbjct: 166 GRGALKQNGDGFGTSVTYDIFDGISAGFAYANSKRTDDQNQLLLGEGDHAETYTGGLKYD 225
Query: 442 AGDTYISTLRNSPQLANRPTATKF-----------QFLFDVGLRMNFGILKKDLKSHNQH 490
A + Y++T A R + F Q+ FD GLR + L+ K N +
Sbjct: 226 ANNIYLATQYTQTYNATRAGSLGFANKAQNFEVAAQYQFDFGLRPSVAYLQSKGKDLNGY 285
Query: 491 SIEIGVQIPTIYNTYY 506
+ ++ + TYY
Sbjct: 286 GDQDILKYVDVGATYY 301
>pdb|1HB9|A Chain A, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|B Chain B, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|C Chain C, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|D Chain D, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|E Chain E, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|F Chain F, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|G Chain G, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|H Chain H, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|I Chain I, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|J Chain J, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|K Chain K, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|L Chain L, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB5|A Chain A, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
P3-Shell, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB5|B Chain B, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
P3-Shell, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB5|C Chain C, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
P3-Shell, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB5|D Chain D, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
P3-Shell, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB5|E Chain E, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
P3-Shell, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB5|F Chain F, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
P3-Shell, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB5|G Chain G, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
P3-Shell, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB5|H Chain H, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
P3-Shell, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB5|I Chain I, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
P3-Shell, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|A Chain A, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|B Chain B, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|C Chain C, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|D Chain D, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|E Chain E, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|F Chain F, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|G Chain G, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|H Chain H, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|I Chain I, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|J Chain J, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|K Chain K, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|L Chain L, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HX6|B Chain B, P3, The Major Coat Protein Of The Lipid-Containing
Bacteriophage Prd1.
pdb|1HX6|C Chain C, P3, The Major Coat Protein Of The Lipid-Containing
Bacteriophage Prd1.
pdb|1HX6|A Chain A, P3, The Major Coat Protein Of The Lipid-Containing
Bacteriophage Prd1.
pdb|1CJD|B Chain B, The Bacteriophage Prd1 Coat Protein, P3, Is Structurally
Similar To Human Adenovirus Hexon
pdb|1CJD|C Chain C, The Bacteriophage Prd1 Coat Protein, P3, Is Structurally
Similar To Human Adenovirus Hexon
pdb|1CJD|A Chain A, The Bacteriophage Prd1 Coat Protein, P3, Is Structurally
Similar To Human Adenovirus Hexon
Length = 394
Score = 27.3 bits (59), Expect = 4.3
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 205 FLNANNQAGGIFQNNTNQAYGNGVTA----QQIAYILKQASITMGPSGDSGAAAAFLDAA 260
F N N + N Y A ++I+Y + Q+ + P G +G +D +
Sbjct: 195 FANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQNGYILPLIDLS 254
Query: 261 LAQHVFNSANAG 272
++ NSA AG
Sbjct: 255 TLYNLENSAQAG 266
>pdb|1HQN|C Chain C, The Selenomethionine Derivative Of P3, The Major Coat
Protein Of The Lipid-Containing Bacteriophage Prd1.
pdb|1HQN|A Chain A, The Selenomethionine Derivative Of P3, The Major Coat
Protein Of The Lipid-Containing Bacteriophage Prd1.
pdb|1HQN|B Chain B, The Selenomethionine Derivative Of P3, The Major Coat
Protein Of The Lipid-Containing Bacteriophage Prd1
Length = 394
Score = 27.3 bits (59), Expect = 4.3
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 205 FLNANNQAGGIFQNNTNQAYGNGVTA----QQIAYILKQASITMGPSGDSGAAAAFLDAA 260
F N N + N Y A ++I+Y + Q+ + P G +G +D +
Sbjct: 195 FANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQNGYILPLIDLS 254
Query: 261 LAQHVFNSANAG 272
++ NSA AG
Sbjct: 255 TLYNLENSAQAG 266
>pdb|1GW8|B Chain B, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW8|E Chain E, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW8|H Chain H, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW8|K Chain K, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography
Length = 372
Score = 26.9 bits (58), Expect = 5.6
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 205 FLNANNQAGGIFQNNTNQAYGNGVTA----QQIAYILKQASITMGPSGDSGAAAAFLDAA 260
F N N + N Y A ++I+Y + Q+ + P G G +D +
Sbjct: 184 FANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQQGYILPLIDLS 243
Query: 261 LAQHVFNSANAG 272
++ NSA AG
Sbjct: 244 TLYNLENSAQAG 255
>pdb|1GW8|C Chain C, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW8|F Chain F, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW8|I Chain I, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW8|L Chain L, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography
Length = 371
Score = 26.9 bits (58), Expect = 5.6
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 205 FLNANNQAGGIFQNNTNQAYGNGVTA----QQIAYILKQASITMGPSGDSGAAAAFLDAA 260
F N N + N Y A ++I+Y + Q+ + P G G +D +
Sbjct: 183 FANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQQGYILPLIDLS 242
Query: 261 LAQHVFNSANAG 272
++ NSA AG
Sbjct: 243 TLYNLENSAQAG 254
>pdb|1KVT| Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.9 bits (58), Expect = 5.6
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 9 KMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDG 45
K++ E ++T QK + S+AL FNPVGA G
Sbjct: 153 KLMVEQILTDLQKAQ--PDWSIALLRYFNPVGAHPSG 187
>pdb|1KVS| Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.9 bits (58), Expect = 5.6
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 9 KMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDG 45
K++ E ++T QK + S+AL FNPVGA G
Sbjct: 153 KLMVEQILTDLQKAQ--PDWSIALLRYFNPVGAHPSG 187
>pdb|1KVQ| Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.9 bits (58), Expect = 5.6
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 9 KMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDG 45
K++ E ++T QK + S+AL FNPVGA G
Sbjct: 153 KLMVEQILTDLQKAQ--PDWSIALLRYFNPVGAHPSG 187
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1UDB| Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4-Fluoro-Alpha-D-Glucose
pdb|1UDA| Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4-Fluoro-Alpha-D-Galactose
pdb|1NAH| Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1XEL| Udp-Galactose 4-Epimerase From Escherichia Coli
pdb|1NAI| Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
Length = 338
Score = 26.9 bits (58), Expect = 5.6
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 9 KMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDG 45
K++ E ++T QK + S+AL FNPVGA G
Sbjct: 153 KLMVEQILTDLQKAQ--PDWSIALLRYFNPVGAHPSG 187
>pdb|1A9Z| Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
Udp-Galactose
Length = 338
Score = 26.9 bits (58), Expect = 5.6
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 9 KMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDG 45
K++ E ++T QK + S+AL FNPVGA G
Sbjct: 153 KLMVEQILTDLQKAQ--PDWSIALLRYFNPVGAHPSG 187
>pdb|1GW8|A Chain A, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW8|D Chain D, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW8|G Chain G, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW8|J Chain J, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography
Length = 370
Score = 26.9 bits (58), Expect = 5.6
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 205 FLNANNQAGGIFQNNTNQAYGNGVTA----QQIAYILKQASITMGPSGDSGAAAAFLDAA 260
F N N + N Y A ++I+Y + Q+ + P G G +D +
Sbjct: 182 FANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQQGYILPLIDLS 241
Query: 261 LAQHVFNSANAG 272
++ NSA AG
Sbjct: 242 TLYNLENSAQAG 253
>pdb|1KVR| Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.9 bits (58), Expect = 5.6
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 9 KMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDG 45
K++ E ++T QK + S+AL FNPVGA G
Sbjct: 153 KLMVEQILTDLQKAQ--PDWSIALLRYFNPVGAHPSG 187
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-
Epimerase Mutant Y299c Complexed With Udp-N-
Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 26.9 bits (58), Expect = 5.6
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 9 KMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDG 45
K++ E ++T QK + S+AL FNPVGA G
Sbjct: 153 KLMVEQILTDLQKAQ--PDWSIALLRYFNPVGAHPSG 187
>pdb|1UDC| Structure Of Udp-Galactose-4-Epimerase Complexed With Udp-Mannose
pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.9 bits (58), Expect = 5.6
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 9 KMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDG 45
K++ E ++T QK + S+AL FNPVGA G
Sbjct: 153 KLMVEQILTDLQKAQ--PDWSIALLRYFNPVGAHPSG 187
>pdb|1A9Y| Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
Udp-Glucose
Length = 338
Score = 26.9 bits (58), Expect = 5.6
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 9 KMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDG 45
K++ E ++T QK + S+AL FNPVGA G
Sbjct: 153 KLMVEQILTDLQKAQ--PDWSIALLRYFNPVGAHPSG 187
>pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9C|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9D|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9D|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
Length = 389
Score = 26.9 bits (58), Expect = 5.6
Identities = 45/215 (20%), Positives = 83/215 (37%), Gaps = 40/215 (18%)
Query: 238 KQASITMGPSGDSGAAAAFLDAALAQHVFNSANAGNDLSAKEFTSLVQNIVNNSQNALTL 297
K + GP G+S A ++AA + G++++ K + + V + NA+
Sbjct: 86 KTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEIN-KRWPGIT---VPENYNAIFE 141
Query: 298 ANNANISNSTGYQVSYGGHIDQARSTQLLNNT-------TNTLAKVTALNNELKANPWLG 350
N+ + + + + +AR ++L +T + K+ N A+ +
Sbjct: 142 PNSGVLFSENCIRAYR--ELAEARGAKVLTHTRVEDFDISPDSVKIETANGSYTADKLIV 199
Query: 351 NFAAGNSSQVNAFNGFITKIGYKQFFGENKNVGLRY------------------YGFFSY 392
+ A NS ++ N I Y+Q G ++ +Y YGF S+
Sbjct: 200 SMGAWNSKLLSKLNLDIPLQPYRQVVGFFESDESKYSNDIDFPGFMVEVPNGIYYGFPSF 259
Query: 393 NGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRSFG 427
G G+ G YN T+G D + +R FG
Sbjct: 260 GGCGLKLG--YN-----TFGQKIDP--DTINREFG 285
>pdb|1KVU| Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.9 bits (58), Expect = 5.6
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 9 KMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDG 45
K++ E ++T QK + S+AL FNPVGA G
Sbjct: 153 KLMVEQILTDLQKAQ--PDWSIALLRYFNPVGAHPSG 187
>pdb|1HB7|A Chain A, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB7|D Chain D, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB7|G Chain G, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB7|J Chain J, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography
Length = 370
Score = 26.6 bits (57), Expect = 7.3
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 205 FLNANNQAGGIFQNNTNQAYGNGVTA----QQIAYILKQASITMGPSGDSGAAAAFLDAA 260
F N N + N Y A ++I+Y + Q+ + P G +G +D +
Sbjct: 182 FANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGAAGYILPLIDLS 241
Query: 261 LAQHVFNSANAG 272
++ NSA AG
Sbjct: 242 TLYNLENSAQAG 253
>pdb|1OBT| Structure Of Ricin A Chain Mutant, Complex With Amp
pdb|1OBS| Structure Of Ricin A Chain Mutant
Length = 267
Score = 26.6 bits (57), Expect = 7.3
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 471 VGLRMNFGILKKDLKSHNQHSIEIGVQIPTIYNTYYKAGGAEVKYFRP 518
VGL +N + +L +H + S+ + + + Y Y+AG + +F P
Sbjct: 49 VGLPINQRFILVELSNHAELSVTLALDVTNAYVVGYRAGNS-AYFFHP 95
>pdb|1BR6|A Chain A, Ricin A Chain (Recombinant) Complex With Pteroic Acid
pdb|1RTC| Ricin A Chain (E.C.3.2.2.22)
Length = 268
Score = 26.6 bits (57), Expect = 7.3
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 471 VGLRMNFGILKKDLKSHNQHSIEIGVQIPTIYNTYYKAGGAEVKYFRP 518
VGL +N + +L +H + S+ + + + Y Y+AG + +F P
Sbjct: 50 VGLPINQRFILVELSNHAELSVTLALDVTNAYVVGYRAGNS-AYFFHP 96
>pdb|2AAI|A Chain A, Ricin (E.C.3.2.2.22)
pdb|1BR5|A Chain A, Ricin A Chain (Recombinant) Complex With Neopterin
pdb|1IL5|B Chain B, Structure Of Ricin A Chain Bound With Inhibitor
2,5-Diamino- 4,6-Dihydroxypyrimidine (Ddp)
pdb|1FMP| Ricin (E.C.3.2.2.22) Complex With Formycin-5'-Monophosphate
pdb|1APG|A Chain A, Ricin (A Chain) Complex With Adenyl(3'-->5')guanosine
(Apg)
pdb|1IL3|A Chain A, Structure Of Ricin A Chain Bound With Inhibitor 7-
Deazaguanine
pdb|1IL9|A Chain A, Structure Of Ricin A Chain Bound With Inhibitor
8-Methyl-9- Oxoguanine
pdb|1IL4|A Chain A, Structure Of Ricin A Chain Bound With Inhibitor 9-
Deazaguanine
pdb|1IL5|A Chain A, Structure Of Ricin A Chain Bound With Inhibitor
2,5-Diamino- 4,6-Dihydroxypyrimidine (Ddp)
Length = 267
Score = 26.6 bits (57), Expect = 7.3
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 471 VGLRMNFGILKKDLKSHNQHSIEIGVQIPTIYNTYYKAGGAEVKYFRP 518
VGL +N + +L +H + S+ + + + Y Y+AG + +F P
Sbjct: 49 VGLPINQRFILVELSNHAELSVTLALDVTNAYVVGYRAGNS-AYFFHP 95
>pdb|1HB7|C Chain C, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB7|F Chain F, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB7|I Chain I, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB7|L Chain L, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography
Length = 371
Score = 26.6 bits (57), Expect = 7.3
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 205 FLNANNQAGGIFQNNTNQAYGNGVTA----QQIAYILKQASITMGPSGDSGAAAAFLDAA 260
F N N + N Y A ++I+Y + Q+ + P G +G +D +
Sbjct: 183 FANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGAAGYILPLIDLS 242
Query: 261 LAQHVFNSANAG 272
++ NSA AG
Sbjct: 243 TLYNLENSAQAG 254
>pdb|1GFF|2 Chain 2, Mol_id: 1; Molecule: Bacteriophage G4 Capsid Proteins Gpf,
Gpg, Gpj; Chain: 1, 2, 3; Mutation: Am(E)w4
Length = 177
Score = 26.6 bits (57), Expect = 7.3
Identities = 15/42 (35%), Positives = 22/42 (51%), Gaps = 4/42 (9%)
Query: 115 PILNTKNIHQCGTTNNGSSSATTAAATTNNGLCFQGNLDLYN 156
P+L+ N+ + N ATT A TT++GLC +D N
Sbjct: 29 PVLSVPNLSRSTILIN----ATTTAVTTHSGLCHVVRIDETN 66
>pdb|1IFT| Ricin A-Chain (Recombinant)
pdb|1IFS| Ricin A-Chain (Recombinant) Complex With Adenosine (Adenosine
Becomes Adenine In The Complex)
pdb|1IFU| Ricin A-Chain (Recombinant) Complex With Formycin
Length = 263
Score = 26.6 bits (57), Expect = 7.3
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 471 VGLRMNFGILKKDLKSHNQHSIEIGVQIPTIYNTYYKAGGAEVKYFRP 518
VGL +N + +L +H + S+ + + + Y Y+AG + +F P
Sbjct: 49 VGLPINQRFILVELSNHAELSVTLALDVTNAYVVGYRAGNS-AYFFHP 95
>pdb|1HB7|B Chain B, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB7|E Chain E, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB7|H Chain H, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB7|K Chain K, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography
Length = 372
Score = 26.6 bits (57), Expect = 7.3
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 205 FLNANNQAGGIFQNNTNQAYGNGVTA----QQIAYILKQASITMGPSGDSGAAAAFLDAA 260
F N N + N Y A ++I+Y + Q+ + P G +G +D +
Sbjct: 184 FANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGAAGYILPLIDLS 243
Query: 261 LAQHVFNSANAG 272
++ NSA AG
Sbjct: 244 TLYNLENSAQAG 255
>pdb|1I5P|A Chain A, Insecticidal Crystal Protein Cry2aa
Length = 633
Score = 26.2 bits (56), Expect = 9.6
Identities = 30/135 (22%), Positives = 50/135 (36%), Gaps = 24/135 (17%)
Query: 95 VAGTLGNLFMNQLGNLI------DLYPILNTKNIHQCGTTN-------------NGSSSA 135
V GT+ + + ++G+LI +L+ I I G+TN N +
Sbjct: 53 VVGTVSSFLLKKVGSLIGKRILSELWGI-----IFPSGSTNLMQDILRETEQFLNQRLNT 107
Query: 136 TTAAATTNNGLCFQGNLDLYNEMVGSIKTLSQNISKNIFQGNNNTTSQNLSNQLSELNTA 195
T A + Q N+ +N+ V + +QN + NT Q N+L +
Sbjct: 108 DTLARVNAELIGLQANIREFNQQVDNFLNPTQNPVPLSITSSVNTMQQLFLNRLPQFQIQ 167
Query: 196 SVYLTYMNSFLNANN 210
L + F A N
Sbjct: 168 GYQLLLLPLFAQAAN 182
>pdb|1JJO|C Chain C, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
pdb|1JJO|D Chain D, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
Length = 261
Score = 26.2 bits (56), Expect = 9.6
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 171 KNIFQGNNNTTSQNLSNQLSELNTASVYLT---YMNSFLNANNQAGGIFQ 217
K+ F+ N T + SE+ +Y Y F + +N+AGGI+Q
Sbjct: 91 KSQFRPENTRTFSFTKDDESEVQIPMMYQQGEFYYGEFSDGSNEAGGIYQ 140
>pdb|1FGS| Folylpolyglutamate Synthetase From Lactobacillus Casei
Length = 428
Score = 26.2 bits (56), Expect = 9.6
Identities = 15/47 (31%), Positives = 24/47 (50%), Gaps = 3/47 (6%)
Query: 199 LTYMNSFLNANNQAGGIFQNNTNQAYGNGVTAQQIAYILKQASITMG 245
LT +++ N Q I TN G G A IA++L+ + +T+G
Sbjct: 26 LTLLHALGNPQQQGRYIHVTGTN---GKGSAANAIAHVLEASGLTVG 69
>pdb|1JBW|A Chain A, Fpgs-Amppcp-Folate Complex
pdb|1JBV|A Chain A, Fpgs-Amppcp Complex
Length = 428
Score = 26.2 bits (56), Expect = 9.6
Identities = 15/47 (31%), Positives = 24/47 (50%), Gaps = 3/47 (6%)
Query: 199 LTYMNSFLNANNQAGGIFQNNTNQAYGNGVTAQQIAYILKQASITMG 245
LT +++ N Q I TN G G A IA++L+ + +T+G
Sbjct: 26 LTLLHALGNPQQQGRYIHVTGTN---GKGSAANAIAHVLEASGLTVG 69
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.131 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,086,498
Number of Sequences: 13198
Number of extensions: 133890
Number of successful extensions: 328
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 39
length of query: 529
length of database: 2,899,336
effective HSP length: 93
effective length of query: 436
effective length of database: 1,671,922
effective search space: 728957992
effective search space used: 728957992
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)