BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645530|ref|NP_207706.1| hypothetical protein
[Helicobacter pylori 26695]
(514 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed ... 28 1.9
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal ... 28 1.9
pdb|1BQC|A Chain A, Beta-Mannanase From Thermomonospora Fus... 27 5.5
pdb|1GPI|A Chain A, Cellobiohydrolase Cel7d (Cbh 58) From P... 26 9.4
pdb|1RUX|A Chain A, Maximum Likelihood Refinement Of Adenov... 26 9.4
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 28.5 bits (62), Expect = 1.9
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 251 YKGLDAQFFYYFAPKTYN----APGFKLVYDTNRNFQNVG 286
+ LD + AP+ Y GF+ V++ NRNF+N G
Sbjct: 226 HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEG 265
>pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
T Lysyl_adenylate Intermediate
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
L
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
Length = 504
Score = 28.5 bits (62), Expect = 1.9
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 251 YKGLDAQFFYYFAPKTYN----APGFKLVYDTNRNFQNVG 286
+ LD + AP+ Y GF+ V++ NRNF+N G
Sbjct: 226 HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEG 265
>pdb|1BQC|A Chain A, Beta-Mannanase From Thermomonospora Fusca
pdb|2MAN|A Chain A, Mannotriose Complex Of Thermomonospora Fusca
Beta-Mannanase
pdb|3MAN|A Chain A, Mannohexaose Complex Of Thermomonospora Fusca
Beta-Mannanase
Length = 302
Score = 26.9 bits (58), Expect = 5.5
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 193 ETQRLRF----WWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPNNSNDFINYGWHGITTT 248
E +RL+ W WS G G+ + +Y F G N + + I YG +GI +T
Sbjct: 243 EAERLKLGYIGWSWSGNGGGVEYLDMVYNF--------DGDNLSPWGERIFYGPNGIAST 294
>pdb|1GPI|A Chain A, Cellobiohydrolase Cel7d (Cbh 58) From Phanerochaete
Chrysosporium. Catalytic Module At 1.32 Ang Resolution
Length = 431
Score = 26.2 bits (56), Expect = 9.4
Identities = 13/42 (30%), Positives = 19/42 (44%)
Query: 157 DYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLR 198
DY +G + + F++GSN G VY T Q L+
Sbjct: 77 DYSGTYGITSTGTALTLKFVTGSNVGSRVYLMADDTHYQLLK 118
>pdb|1RUX|A Chain A, Maximum Likelihood Refinement Of Adenovirus Type 5 Hexon
With Tnt
Length = 951
Score = 26.2 bits (56), Expect = 9.4
Identities = 30/119 (25%), Positives = 43/119 (35%), Gaps = 19/119 (15%)
Query: 239 NYGWHGITTTYSYKGLDAQFFYYFAPKTYNAPGFKLVYDTN-RNFQNVGFRSQ----SMI 293
N G+ G SYK FF F P + ++V DT +++Q VG Q +
Sbjct: 774 NIGYQGFYIPESYKDRMYSFFRNFQPMSR-----QVVDDTKYKDYQQVGILHQHNNSGFV 828
Query: 294 MTTFPLYYRGWYNPETNTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTF 352
P G P Y L+G+ V ++ F D W I F + F
Sbjct: 829 GYLAPTMREGQAYPANFPY---------PLIGKTAVDSITQKKFLCDRTLWRIPFSSNF 878
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.138 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,439,251
Number of Sequences: 13198
Number of extensions: 164207
Number of successful extensions: 279
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 6
length of query: 514
length of database: 2,899,336
effective HSP length: 92
effective length of query: 422
effective length of database: 1,685,120
effective search space: 711120640
effective search space used: 711120640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)