BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645532|ref|NP_207708.1| iron-regulated outer
membrane protein (frpB) [Helicobacter pylori 26695]
(249 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli... 31 0.12
pdb|1ID3|H Chain H, Crystal Structure Of The Yeast Nucleoso... 28 1.3
pdb|1GW5|B Chain B, Ap2 Clathrin Adaptor Core 27 2.2
pdb|1JT0|A Chain A, Crystal Structure Of A Cooperative Qacr... 27 2.9
pdb|1JT6|A Chain A, Crystal Structure Of The Multidrug Bind... 27 2.9
pdb|1JUS|A Chain A, Crystal Structure Of The Multidrug Bind... 26 3.8
pdb|1DHX| Adenovirus, Hexon Protein, Coat Protein Mol_id:... 26 4.9
pdb|2HIO|B Chain B, Histone Octamer (Chicken), Chromosomal ... 25 8.4
pdb|1AOI|D Chain D, X-Ray Structure Of The Nucleosome Core ... 25 8.4
pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylo... 25 8.4
pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcal... 25 8.4
pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Al... 25 8.4
pdb|1F66|D Chain D, 2.6 A Crystal Structure Of A Nucleosome... 25 8.4
pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Al... 25 8.4
pdb|1EQZ|B Chain B, X-Ray Structure Of The Nucleosome Core ... 25 8.4
pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrit... 25 8.4
pdb|1BQ5| Nitrite Reductase From Alcaligenes Xylosoxidans... 25 8.4
>pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|B Chain B, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|C Chain C, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|D Chain D, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|E Chain E, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|F Chain F, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|G Chain G, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|H Chain H, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
Length = 582
Score = 31.2 bits (69), Expect = 0.12
Identities = 16/52 (30%), Positives = 31/52 (58%), Gaps = 1/52 (1%)
Query: 36 KTERKKEKNAQHTLGKVTTQAAKIFNYNNQTTI-SSKELERRQANQISDMFR 86
K R KN Q+T+G+VTT A ++ + + I +E+E ++ +++S+ R
Sbjct: 187 KRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMR 238
>pdb|1ID3|H Chain H, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|D Chain D, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 130
Score = 27.7 bits (60), Expect = 1.3
Identities = 9/24 (37%), Positives = 20/24 (82%)
Query: 51 KVTTQAAKIFNYNNQTTISSKELE 74
++ T+A+K+ YN ++TIS++E++
Sbjct: 75 RIATEASKLAAYNKKSTISAREIQ 98
>pdb|1GW5|B Chain B, Ap2 Clathrin Adaptor Core
Length = 591
Score = 26.9 bits (58), Expect = 2.2
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 22 FELEAKEEEEKEERKTERKKEKNAQHTLGK 51
FEL+A+ EK+E++ E K+ A T+GK
Sbjct: 16 FELKAELNNEKKEKRKEAVKKVIAAMTVGK 45
>pdb|1JT0|A Chain A, Crystal Structure Of A Cooperative Qacr-Dna Complex
pdb|1JT0|B Chain B, Crystal Structure Of A Cooperative Qacr-Dna Complex
pdb|1JT0|C Chain C, Crystal Structure Of A Cooperative Qacr-Dna Complex
pdb|1JTX|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Crystal Violet
pdb|1JTX|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Crystal Violet
pdb|1JTX|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Crystal Violet
pdb|1JTX|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Crystal Violet
pdb|1JUP|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Malachite Green
pdb|1JUP|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Malachite Green
pdb|1JUP|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Malachite Green
pdb|1JUP|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Malachite Green
pdb|1JTY|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Ethidium
pdb|1JTY|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Ethidium
pdb|1JTY|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Ethidium
pdb|1JTY|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Ethidium
pdb|1JUM|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To The Natural Drug Berberine
pdb|1JUM|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To The Natural Drug Berberine
pdb|1JUM|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To The Natural Drug Berberine
pdb|1JUM|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To The Natural Drug Berberine
pdb|1JT0|D Chain D, Crystal Structure Of A Cooperative Qacr-Dna Complex
Length = 194
Score = 26.6 bits (57), Expect = 2.9
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 13 SIFLSLLGTFELEAKEEEEKEERKTERKKEKNAQHTLGKVTTQAAKIFNYNNQTTISSKE 72
++FL +L E + +E+ +KE+ K + +EK + +TT+ + Y Q I
Sbjct: 48 NLFLEILNIEESKWQEQWKKEQIKAKTNREKFYLYNELSLTTE----YYYPLQNAIIEFY 103
Query: 73 LERRQANQISDMFRRNPNINVGGGAVIAQKIYVRG 107
E + N I++ + N + VI ++ + G
Sbjct: 104 TEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNG 138
>pdb|1JT6|A Chain A, Crystal Structure Of The Multidrug Binding Protein Qacr
Bound To Dequalinium
pdb|1JT6|B Chain B, Crystal Structure Of The Multidrug Binding Protein Qacr
Bound To Dequalinium
pdb|1JT6|D Chain D, Crystal Structure Of The Multidrug Binding Protein Qacr
Bound To Dequalinium
pdb|1JT6|E Chain E, Crystal Structure Of The Multidrug Binding Protein Qacr
Bound To Dequalinium
Length = 188
Score = 26.6 bits (57), Expect = 2.9
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 13 SIFLSLLGTFELEAKEEEEKEERKTERKKEKNAQHTLGKVTTQAAKIFNYNNQTTISSKE 72
++FL +L E + +E+ +KE+ K + +EK + +TT+ + Y Q I
Sbjct: 48 NLFLEILNIEESKWQEQWKKEQIKAKTNREKFYLYNELSLTTE----YYYPLQNAIIEFY 103
Query: 73 LERRQANQISDMFRRNPNINVGGGAVIAQKIYVRG 107
E + N I++ + N + VI ++ + G
Sbjct: 104 TEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNG 138
>pdb|1JUS|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Rhodamine 6g
pdb|1JUS|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Rhodamine 6g
pdb|1JUS|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Rhodamine 6g
pdb|1JUS|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Rhodamine 6g
Length = 194
Score = 26.2 bits (56), Expect = 3.8
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 13 SIFLSLLGTFELEAKEEEEKEERKTERKKEKNAQHTLGKVTTQAAKIFNYNNQTTISSKE 72
++FL +L E + +E+ +KE+ K + +EK + +TT+ + Y Q I
Sbjct: 48 NLFLEILNIEESKWQEQWKKEQIKAKTNREKFYLYNELSLTTE----YYYPLQNAIIEFY 103
Query: 73 LERRQANQISDMFRRNPNINVGGGAVIAQKIYVRG 107
E + N I++ + N + VI ++ + G
Sbjct: 104 TEYYKTNSINEKXNKLENKYIDAYHVIFKEGNLNG 138
>pdb|1DHX| Adenovirus, Hexon Protein, Coat Protein Mol_id: 1; Molecule:
Adenovirus Type 2 Hexon; Chain: Null; Synonym:
Adenovirus Type 2 Polypeptide Ii
Length = 967
Score = 25.8 bits (55), Expect = 4.9
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 26 AKEEEEKEERKTERKKEKNAQHTLGKVT 53
A++EEE++E + E ++E+NA+ K T
Sbjct: 145 AEDEEEEDEDEEEEEEEQNARDQATKKT 172
>pdb|2HIO|B Chain B, Histone Octamer (Chicken), Chromosomal Protein
Length = 125
Score = 25.0 bits (53), Expect = 8.4
Identities = 7/24 (29%), Positives = 20/24 (83%)
Query: 51 KVTTQAAKIFNYNNQTTISSKELE 74
++ +A+++ +YN ++TI+S+E++
Sbjct: 72 RIAGEASRLAHYNKRSTITSREIQ 95
>pdb|1AOI|D Chain D, X-Ray Structure Of The Nucleosome Core Particle At 2.8 A
Resolution
pdb|1AOI|H Chain H, X-Ray Structure Of The Nucleosome Core Particle At 2.8 A
Resolution
Length = 99
Score = 25.0 bits (53), Expect = 8.4
Identities = 7/24 (29%), Positives = 20/24 (83%)
Query: 51 KVTTQAAKIFNYNNQTTISSKELE 74
++ +A+++ +YN ++TI+S+E++
Sbjct: 46 RIAGEASRLAHYNKRSTITSREIQ 69
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 25.0 bits (53), Expect = 8.4
Identities = 12/34 (35%), Positives = 16/34 (46%)
Query: 173 FIPKGKDYAISGAATFLTNFGDRETVMGAYRHNH 206
+IPKG D AT ++GD VM +H
Sbjct: 178 YIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
>pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcaligenes Xylosoxidans
Nitrite Reductase
Length = 336
Score = 25.0 bits (53), Expect = 8.4
Identities = 12/34 (35%), Positives = 16/34 (46%)
Query: 173 FIPKGKDYAISGAATFLTNFGDRETVMGAYRHNH 206
+IPKG D AT ++GD VM +H
Sbjct: 178 YIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
>pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 25.0 bits (53), Expect = 8.4
Identities = 12/34 (35%), Positives = 16/34 (46%)
Query: 173 FIPKGKDYAISGAATFLTNFGDRETVMGAYRHNH 206
+IPKG D AT ++GD VM +H
Sbjct: 178 YIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
>pdb|1F66|D Chain D, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|H Chain H, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 126
Score = 25.0 bits (53), Expect = 8.4
Identities = 7/24 (29%), Positives = 20/24 (83%)
Query: 51 KVTTQAAKIFNYNNQTTISSKELE 74
++ +A+++ +YN ++TI+S+E++
Sbjct: 73 RIAGEASRLAHYNKRSTITSREIQ 96
>pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 25.0 bits (53), Expect = 8.4
Identities = 12/34 (35%), Positives = 16/34 (46%)
Query: 173 FIPKGKDYAISGAATFLTNFGDRETVMGAYRHNH 206
+IPKG D AT ++GD VM +H
Sbjct: 178 YIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
>pdb|1EQZ|B Chain B, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|F Chain F, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|B Chain B, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|F Chain F, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
Length = 126
Score = 25.0 bits (53), Expect = 8.4
Identities = 7/24 (29%), Positives = 20/24 (83%)
Query: 51 KVTTQAAKIFNYNNQTTISSKELE 74
++ +A+++ +YN ++TI+S+E++
Sbjct: 73 RIAGEASRLAHYNKRSTITSREIQ 96
>pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
pdb|1HAW|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
Length = 336
Score = 25.0 bits (53), Expect = 8.4
Identities = 12/34 (35%), Positives = 16/34 (46%)
Query: 173 FIPKGKDYAISGAATFLTNFGDRETVMGAYRHNH 206
+IPKG D AT ++GD VM +H
Sbjct: 178 YIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 211
>pdb|1BQ5| Nitrite Reductase From Alcaligenes Xylosoxidans Gifu 1051
Length = 342
Score = 25.0 bits (53), Expect = 8.4
Identities = 12/34 (35%), Positives = 16/34 (46%)
Query: 173 FIPKGKDYAISGAATFLTNFGDRETVMGAYRHNH 206
+IPKG D AT ++GD VM +H
Sbjct: 184 YIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSH 217
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.131 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,313,024
Number of Sequences: 13198
Number of extensions: 50930
Number of successful extensions: 129
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 114
Number of HSP's gapped (non-prelim): 18
length of query: 249
length of database: 2,899,336
effective HSP length: 86
effective length of query: 163
effective length of database: 1,764,308
effective search space: 287582204
effective search space used: 287582204
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)