BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645534|ref|NP_207710.1| hypothetical protein
[Helicobacter pylori 26695]
(143 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BC1| Recombinant Rat Annexin V, Quadruple Mutant (T7... 28 0.32
pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein... 28 0.32
pdb|1BC3| Recombinant Rat Annexin V, Triple Mutant (T72k,... 28 0.32
pdb|1G5N|A Chain A, Annexin V Complex With Heparin Oligosac... 27 0.70
pdb|2RAN| Annexin V 27 0.70
pdb|1BCW| Recombinant Rat Annexin V, T72a Mutant 27 0.70
pdb|1BCY| Recombinant Rat Annexin V, T72k Mutant 27 0.70
pdb|1BCZ| Recombinant Rat Annexin V, T72s Mutant 27 0.70
pdb|1BC0| Recombinant Rat Annexin V, W185a Mutant 27 0.70
pdb|1JDJ|A Chain A, Crystal Structure Of Leishmania Mexican... 27 0.92
pdb|1G20|A Chain A, Mgatp-Bound And Nucleotide-Free Structu... 25 3.5
pdb|1M1N|A Chain A, Nitrogenase Mofe Protein From Azotobact... 25 3.5
pdb|1NLD|H Chain H, Fab Fragment Of A Neutralizing Antibody... 24 7.8
>pdb|1BC1| Recombinant Rat Annexin V, Quadruple Mutant (T72k, S144k, S228k,
S303k)
Length = 319
Score = 28.5 bits (62), Expect = 0.32
Identities = 33/139 (23%), Positives = 58/139 (40%), Gaps = 11/139 (7%)
Query: 14 GLLSKDSEKLNALKGRPKNQSVLIESADFSTL--KSLVRAPNA-----FKNLIRRSAKTT 66
GL + + LN L R Q I + +F TL + LV + F+ LI K +
Sbjct: 28 GLGTDEDSILNLLTARSNAQRQQI-AEEFKTLFGRDLVNDMKSELKGKFEKLIVALMKPS 86
Query: 67 FIYPNSKAVRVIRGRHGDFLNRFKTLYSTSANLTQC---AYDKEIASNLADVIVSDERGL 123
+Y + ++G D + + S + + AY++E SNL D +V D +G
Sbjct: 87 RLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDVVGDTKGY 146
Query: 124 FESSSSKIFRLYKDKKVRI 142
++ + + +D I
Sbjct: 147 YQRMLVVLLQANRDPDTAI 165
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 28.5 bits (62), Expect = 0.32
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 106 KEIASNLADV---IVSDERGLFESSSSKIFRLYKDKKVRI 142
KE+AS L D+ + L +S K+ RL+K KK+RI
Sbjct: 252 KELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRI 291
>pdb|1BC3| Recombinant Rat Annexin V, Triple Mutant (T72k, S144k, S228k)
Length = 319
Score = 28.5 bits (62), Expect = 0.32
Identities = 33/139 (23%), Positives = 58/139 (40%), Gaps = 11/139 (7%)
Query: 14 GLLSKDSEKLNALKGRPKNQSVLIESADFSTL--KSLVRAPNA-----FKNLIRRSAKTT 66
GL + + LN L R Q I + +F TL + LV + F+ LI K +
Sbjct: 28 GLGTDEDSILNLLTARSNAQRQQI-AEEFKTLFGRDLVNDMKSELKGKFEKLIVALMKPS 86
Query: 67 FIYPNSKAVRVIRGRHGDFLNRFKTLYSTSANLTQC---AYDKEIASNLADVIVSDERGL 123
+Y + ++G D + + S + + AY++E SNL D +V D +G
Sbjct: 87 RLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDVVGDTKGY 146
Query: 124 FESSSSKIFRLYKDKKVRI 142
++ + + +D I
Sbjct: 147 YQRMLVVLLQANRDPDTAI 165
>pdb|1G5N|A Chain A, Annexin V Complex With Heparin Oligosaccharides
pdb|1A8A| Rat Annexin V Complexed With Glycerophosphoserine
pdb|1A8B| Rat Annexin V Complexed With Glycerophosphoethanolamine
Length = 318
Score = 27.3 bits (59), Expect = 0.70
Identities = 33/139 (23%), Positives = 57/139 (40%), Gaps = 11/139 (7%)
Query: 14 GLLSKDSEKLNALKGRPKNQSVLIESADFSTL--KSLVRAPNA-----FKNLIRRSAKTT 66
GL + + LN L R Q I + +F TL + LV + F+ LI K +
Sbjct: 27 GLGTDEDSILNLLTARSNAQRQQI-AEEFKTLFGRDLVNDMKSELTGKFEKLIVALMKPS 85
Query: 67 FIYPNSKAVRVIRGRHGDFLNRFKTLYSTSANLTQC---AYDKEIASNLADVIVSDERGL 123
+Y + ++G D + + S + + AY++E SNL D +V D G
Sbjct: 86 RLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDVVGDTSGY 145
Query: 124 FESSSSKIFRLYKDKKVRI 142
++ + + +D I
Sbjct: 146 YQRMLVVLLQANRDPDTAI 164
>pdb|2RAN| Annexin V
Length = 316
Score = 27.3 bits (59), Expect = 0.70
Identities = 33/139 (23%), Positives = 57/139 (40%), Gaps = 11/139 (7%)
Query: 14 GLLSKDSEKLNALKGRPKNQSVLIESADFSTL--KSLVRAPNA-----FKNLIRRSAKTT 66
GL + + LN L R Q I + +F TL + LV + F+ LI K +
Sbjct: 27 GLGTDEDSILNLLTARSNAQRQQI-AEEFKTLFGRDLVNDMKSELTGKFEKLIVALMKPS 85
Query: 67 FIYPNSKAVRVIRGRHGDFLNRFKTLYSTSANLTQC---AYDKEIASNLADVIVSDERGL 123
+Y + ++G D + + S + + AY++E SNL D +V D G
Sbjct: 86 RLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDVVGDTSGY 145
Query: 124 FESSSSKIFRLYKDKKVRI 142
++ + + +D I
Sbjct: 146 YQRMLVVLLQANRDPDTAI 164
>pdb|1BCW| Recombinant Rat Annexin V, T72a Mutant
Length = 319
Score = 27.3 bits (59), Expect = 0.70
Identities = 33/139 (23%), Positives = 57/139 (40%), Gaps = 11/139 (7%)
Query: 14 GLLSKDSEKLNALKGRPKNQSVLIESADFSTL--KSLVRAPNA-----FKNLIRRSAKTT 66
GL + + LN L R Q I + +F TL + LV + F+ LI K +
Sbjct: 28 GLGTDEDSILNLLTARSNAQRQQI-AEEFKTLFGRDLVNDMKSELAGKFEKLIVALMKPS 86
Query: 67 FIYPNSKAVRVIRGRHGDFLNRFKTLYSTSANLTQC---AYDKEIASNLADVIVSDERGL 123
+Y + ++G D + + S + + AY++E SNL D +V D G
Sbjct: 87 RLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDVVGDTSGY 146
Query: 124 FESSSSKIFRLYKDKKVRI 142
++ + + +D I
Sbjct: 147 YQRMLVVLLQANRDPDTAI 165
>pdb|1BCY| Recombinant Rat Annexin V, T72k Mutant
Length = 319
Score = 27.3 bits (59), Expect = 0.70
Identities = 33/139 (23%), Positives = 57/139 (40%), Gaps = 11/139 (7%)
Query: 14 GLLSKDSEKLNALKGRPKNQSVLIESADFSTL--KSLVRAPNA-----FKNLIRRSAKTT 66
GL + + LN L R Q I + +F TL + LV + F+ LI K +
Sbjct: 28 GLGTDEDSILNLLTARSNAQRQQI-AEEFKTLFGRDLVNDMKSELKGKFEKLIVALMKPS 86
Query: 67 FIYPNSKAVRVIRGRHGDFLNRFKTLYSTSANLTQC---AYDKEIASNLADVIVSDERGL 123
+Y + ++G D + + S + + AY++E SNL D +V D G
Sbjct: 87 RLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDVVGDTSGY 146
Query: 124 FESSSSKIFRLYKDKKVRI 142
++ + + +D I
Sbjct: 147 YQRMLVVLLQANRDPDTAI 165
>pdb|1BCZ| Recombinant Rat Annexin V, T72s Mutant
Length = 319
Score = 27.3 bits (59), Expect = 0.70
Identities = 33/139 (23%), Positives = 57/139 (40%), Gaps = 11/139 (7%)
Query: 14 GLLSKDSEKLNALKGRPKNQSVLIESADFSTL--KSLVRAPNA-----FKNLIRRSAKTT 66
GL + + LN L R Q I + +F TL + LV + F+ LI K +
Sbjct: 28 GLGTDEDSILNLLTARSNAQRQQI-AEEFKTLFGRDLVNDMKSELSGKFEKLIVALMKPS 86
Query: 67 FIYPNSKAVRVIRGRHGDFLNRFKTLYSTSANLTQC---AYDKEIASNLADVIVSDERGL 123
+Y + ++G D + + S + + AY++E SNL D +V D G
Sbjct: 87 RLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDVVGDTSGY 146
Query: 124 FESSSSKIFRLYKDKKVRI 142
++ + + +D I
Sbjct: 147 YQRMLVVLLQANRDPDTAI 165
>pdb|1BC0| Recombinant Rat Annexin V, W185a Mutant
Length = 319
Score = 27.3 bits (59), Expect = 0.70
Identities = 33/139 (23%), Positives = 57/139 (40%), Gaps = 11/139 (7%)
Query: 14 GLLSKDSEKLNALKGRPKNQSVLIESADFSTL--KSLVRAPNA-----FKNLIRRSAKTT 66
GL + + LN L R Q I + +F TL + LV + F+ LI K +
Sbjct: 28 GLGTDEDSILNLLTARSNAQRQQI-AEEFKTLFGRDLVNDMKSELTGKFEKLIVALMKPS 86
Query: 67 FIYPNSKAVRVIRGRHGDFLNRFKTLYSTSANLTQC---AYDKEIASNLADVIVSDERGL 123
+Y + ++G D + + S + + AY++E SNL D +V D G
Sbjct: 87 RLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDVVGDTSGY 146
Query: 124 FESSSSKIFRLYKDKKVRI 142
++ + + +D I
Sbjct: 147 YQRMLVVLLQANRDPDTAI 165
>pdb|1JDJ|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase In Complex With 2-Fluoro-6-
Chloropurine
pdb|1EVZ|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase In Complex With Nad
pdb|1EVY|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase
Length = 366
Score = 26.9 bits (58), Expect = 0.92
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 32 NQSVLIESADFSTLKSLVRAPNAFKNLIRRSAKTTFIYPNSKAVRVIRGRHGDFLNRFKT 91
N++V+ S F T ++V L ++ + + N + VR++ + + L F
Sbjct: 16 NKAVVFGSGAFGTALAMV--------LSKKCREVCVWHMNEEEVRLVNEKRENVL--FLK 65
Query: 92 LYSTSANLTQCAYDKEIASNLADVIV-----SDERGLFESSSSKIFRLYKDKKVRI 142
++N+T + D E A N A++I+ RG FE S + K+K+V +
Sbjct: 66 GVQLASNITFTS-DVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPV 120
>pdb|1G20|A Chain A, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|C Chain C, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|A Chain A, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|C Chain C, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
Length = 492
Score = 25.0 bits (53), Expect = 3.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 7 VQSDTTIGLLSKDSEKLNALKGRPKNQSVL 36
VQS+ IGL+ D E ++ +KG +++++
Sbjct: 150 VQSECPIGLIGDDIESVSKVKGAELSKTIV 179
>pdb|1M1N|A Chain A, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|C Chain C, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|E Chain E, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|G Chain G, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1N2C|A Chain A, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|C Chain C, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|2MIN|C Chain C, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|3MIN|C Chain C, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|2MIN|A Chain A, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|3MIN|A Chain A, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|1L5H|A Chain A, Femo-Cofactor Deficient Nitrogenase Mofe Protein
Length = 491
Score = 25.0 bits (53), Expect = 3.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 7 VQSDTTIGLLSKDSEKLNALKGRPKNQSVL 36
VQS+ IGL+ D E ++ +KG +++++
Sbjct: 149 VQSECPIGLIGDDIESVSKVKGAELSKTIV 178
>pdb|1NLD|H Chain H, Fab Fragment Of A Neutralizing Antibody Directed Against
An Epitope Of Gp41 From Hiv-1
Length = 215
Score = 23.9 bits (50), Expect = 7.8
Identities = 12/37 (32%), Positives = 19/37 (50%)
Query: 64 KTTFIYPNSKAVRVIRGRHGDFLNRFKTLYSTSANLT 100
K + PN +A+ R GDF + T+ +SA+ T
Sbjct: 81 KMNSLQPNDRAIYYCARRGGDFWGQGTTVTVSSASTT 117
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.132 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 645,706
Number of Sequences: 13198
Number of extensions: 19971
Number of successful extensions: 73
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 13
length of query: 143
length of database: 2,899,336
effective HSP length: 79
effective length of query: 64
effective length of database: 1,856,694
effective search space: 118828416
effective search space used: 118828416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)