BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645535|ref|NP_207711.1| carbamoyl-phosphate
synthase (glutamine-hydrolysing) (pyrAb) [Helicobacter pylori 26695]
(1085 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthe... 1098 0.0
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small S... 1095 0.0
pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught ... 1065 0.0
pdb|1BNC|A Chain A, Mol_id: 1; Molecule: Biotin Carboxylase... 50 2e-06
pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mu... 48 5e-06
pdb|1KJ8|A Chain A, Crystal Structure Of Purt-Encoded Glyci... 42 5e-04
pdb|1EZ1|A Chain A, Structure Of Escherichia Coli Purt-Enco... 42 5e-04
pdb|1GSO|A Chain A, Glycinamide Ribonucleotide Synthetase (... 38 0.005
pdb|1CQJ|B Chain B, Crystal Structure Of Dephosphorylated E... 33 0.22
pdb|1JLL|B Chain B, Crystal Structure Analysis Of The E197b... 33 0.22
pdb|1JKJ|B Chain B, E. Coli Scs >gi|1065086|pdb|1SCU|B Chai... 33 0.22
pdb|1IOW| Complex Of Y216f D-Ala:d-Ala Ligase With Adp An... 31 0.85
pdb|1TMO| Trimethylamine N-Oxide Reductase From Shewanell... 30 1.1
pdb|1IOV| Complex Of D-Ala:d-Ala Ligase With Adp And A Ph... 30 1.1
pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of ... 28 4.2
pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Compl... 28 4.2
pdb|1G8T|A Chain A, Sm Endonuclease From Seratia Marcenscen... 28 5.5
pdb|1QL0|A Chain A, Sm Endonuclease From Seratia Marcenscen... 28 5.5
pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5 28 7.2
pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein... 27 9.4
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-G... 27 9.4
pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From ... 27 9.4
pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotran... 27 9.4
>pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
Length = 1073
Score = 1098 bits (2839), Expect = 0.0
Identities = 590/1095 (53%), Positives = 765/1095 (68%), Gaps = 41/1095 (3%)
Query: 1 MPKRTDISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINSNPATVMTDPEF 60
MPKRTDI +IL++G+GPIVIGQACEFDYSG Q+CK L+ GYRVIL+NSNPAT+MTDPE
Sbjct: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
Query: 61 SHQTYIQPITPENIATIIEKEKIDAILPTMGGQTALNAVMQMHQKGMLE--GVELLGAKI 118
+ TYI+PI E + IIEKE+ DA+LPTMGGQTALN +++ ++G+LE GV ++GA
Sbjct: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
Query: 119 EAIKKGEDRQAFKEAMLKIGMDLPKGRYAYTELEALEAINEIGFPAIIRASFTLAGGGSG 178
+AI K EDR+ F AM KIG++ + A+T EAL ++GFP IIR SFT+ G G G
Sbjct: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180
Query: 179 VAYNIEEFQELAKNALDASPINEILIEESLLGWKEYEMEVIRDSKDNCIIVCCIENIDPM 238
+AYN EEF+E+ LD SP E+LI+ESL+GWKEYEMEV+RD DNCIIVC IEN D M
Sbjct: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
Query: 239 GVHTGDSITIAPSLTLTDKEYQRMRDASFAILREIGVDTGGSNVQFAIHPETLRMVVIEM 298
G+HTGDSIT+AP+ TLTDKEYQ MR+AS A+LREIGV+TGGSNVQFA++P+ R++VIEM
Sbjct: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300
Query: 299 NPRVSRSSALASKATGFPIAKVATMLAVGFSLDEIQNDIT--NTPASFEPSLDYIVVKIP 356
NPRVSRSSALASKATGFPIAKVA LAVG++LDE+ NDIT TPASFEPS+DY+V KIP
Sbjct: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360
Query: 357 RFAFEKFAGVSSTLGTSMKSIGEVMAIGGNFLEALQKALCSLENNWLGFE-SLSKD---- 411
RF FEKFAG + L T MKS+GEVMAIG E+LQKAL LE GF+ +S D
Sbjct: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEA 420
Query: 412 LEAIKKEIRRPNPKRLLYIADAFRLGVCVDEVFELCQIDRWFLSQIQKLVEVEESINSSV 471
L I++E++ R+ YIADAFR G+ VD VF L IDRWFL QI++LV +EE +
Sbjct: 421 LTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG 480
Query: 472 LT--DAKKLRGLKNLGFSDARIAAKIKENENLEVSPFEVELARSNLQIVPNFEEVDTCAA 529
+T +A LR LK GF+DAR+A + V E+ R + P ++ VDTCAA
Sbjct: 481 ITGLNADFLRQLKRKGFADARLA------KLAGVREAEIRKLRDQYDLHPVYKRVDTCAA 534
Query: 530 EFLSLTPYLYSTYAPNPLPPIENKQEKKEKKILIIGSGPNRIGQGIEFDYCCVHASLALK 589
EF + T Y+YSTY E +KI+++G GPNRIGQGIEFDYCCVHASLAL+
Sbjct: 535 EFATDTAYMYSTYEEE----CEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALR 590
Query: 590 DLNIKSVMFNCNPETVSTDYDTSDTLYFEPIHFECVKSIIQRERVDGIIVHFGGQTPLKL 649
+ +++M NCNPETVSTDYDTSD LYFEP+ E V I++ E+ G+IV +GGQTPLKL
Sbjct: 591 EDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKL 650
Query: 650 AKDLAKMQAPIIGTPFKVIDIAEDREKFSLFLKELDIKQPKNGMAKSVDEAYSIANVIGF 709
A+ L P+IGT ID AEDRE+F ++ L +KQP N +++ A A IG+
Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGY 710
Query: 710 PIIVRPSYVLGGQHMQILENIEELRHYLESVTHALEISPKNPLLIDKFLEKAVELDVDAI 769
P++VRPSYVLGG+ M+I+ + +LR Y ++ A+ +S P+L+D FL+ AVE+DVDAI
Sbjct: 711 PLVVRPSYVLGGRAMEIVYDEADLRRYFQT---AVSVSNDAPVLLDHFLDDAVEVDVDAI 767
Query: 770 CDKKEVYIAGILQHIEEAGIHSGDSACFIPS-TLSPEILDEIERVSAKIALHLGVVGLLN 828
CD + V I GI++HIE+AG+HSGDSAC +P+ TLS EI D + + K+A L V GL+N
Sbjct: 768 CDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMN 827
Query: 829 IQFAVHQNSLYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLEDLKEALKFYDKKNIV 888
+QFAV N +YLIEVNPRA+RTVPF+SKA GVPLAKVA RVM + L E
Sbjct: 828 VQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAE----------- 876
Query: 889 GYSKGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTGEVMGIARSLGLAFFKAQT 948
+GV K +P + ++KE V PFNK G D +LGPEM+STGEVMG+ R+ AF KAQ
Sbjct: 877 ---QGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQL 933
Query: 949 ACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVQLGFELCATEGTHKALEKAGVKSLKVLK 1008
+ +K G +S+++ DKE L +L++ GFEL AT GT L +AG+ V K
Sbjct: 934 GSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNK 993
Query: 1009 ISEGRPNIMDLMMNGEISMAIN-TSDHKSQDDAKLIRASVLKNHVSYFTTLSTIEVLLLA 1067
+ EGRP+I D + NGE + IN TS ++ +D+++IR S L+ V Y TTL+ +A
Sbjct: 994 VHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMA 1053
Query: 1068 LEESSKEDELLALQD 1082
L + E +++++Q+
Sbjct: 1054 LNADATE-KVISVQE 1067
>pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point Mutant
Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point Mutant
Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point Mutant
Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point Mutant
Of Carbamoyl Phosphate Synthetase
pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
Length = 1073
Score = 1095 bits (2832), Expect = 0.0
Identities = 589/1095 (53%), Positives = 764/1095 (68%), Gaps = 41/1095 (3%)
Query: 1 MPKRTDISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINSNPATVMTDPEF 60
MPKRTDI +IL++G+GPIVIGQACEFDYSG Q+CK L+ GYRVI +NSNPAT+MTDPE
Sbjct: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEM 60
Query: 61 SHQTYIQPITPENIATIIEKEKIDAILPTMGGQTALNAVMQMHQKGMLE--GVELLGAKI 118
+ TYI+PI E + IIEKE+ DA+LPTMGGQTALN +++ ++G+LE GV ++GA
Sbjct: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
Query: 119 EAIKKGEDRQAFKEAMLKIGMDLPKGRYAYTELEALEAINEIGFPAIIRASFTLAGGGSG 178
+AI K EDR+ F AM KIG++ + A+T EAL ++GFP IIR SFT+ G G G
Sbjct: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180
Query: 179 VAYNIEEFQELAKNALDASPINEILIEESLLGWKEYEMEVIRDSKDNCIIVCCIENIDPM 238
+AYN EEF+E+ LD SP E+LI+ESL+GWKEYEMEV+RD DNCIIVC IEN D M
Sbjct: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
Query: 239 GVHTGDSITIAPSLTLTDKEYQRMRDASFAILREIGVDTGGSNVQFAIHPETLRMVVIEM 298
G+HTGDSIT+AP+ TLTDKEYQ MR+AS A+LREIGV+TGGSNVQFA++P+ R++VIEM
Sbjct: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300
Query: 299 NPRVSRSSALASKATGFPIAKVATMLAVGFSLDEIQNDIT--NTPASFEPSLDYIVVKIP 356
NPRVSRSSALASKATGFPIAKVA LAVG++LDE+ NDIT TPASFEPS+DY+V KIP
Sbjct: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360
Query: 357 RFAFEKFAGVSSTLGTSMKSIGEVMAIGGNFLEALQKALCSLENNWLGFE-SLSKD---- 411
RF FEKFAG + L T MKS+GEVMAIG E+LQKAL LE GF+ +S D
Sbjct: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEA 420
Query: 412 LEAIKKEIRRPNPKRLLYIADAFRLGVCVDEVFELCQIDRWFLSQIQKLVEVEESINSSV 471
L I++E++ R+ YIADAFR G+ VD VF L IDRWFL QI++LV +EE +
Sbjct: 421 LTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG 480
Query: 472 LT--DAKKLRGLKNLGFSDARIAAKIKENENLEVSPFEVELARSNLQIVPNFEEVDTCAA 529
+T +A LR LK GF+DAR+A + V E+ R + P ++ VDTCAA
Sbjct: 481 ITGLNADFLRQLKRKGFADARLA------KLAGVREAEIRKLRDQYDLHPVYKRVDTCAA 534
Query: 530 EFLSLTPYLYSTYAPNPLPPIENKQEKKEKKILIIGSGPNRIGQGIEFDYCCVHASLALK 589
EF + T Y+YSTY E +KI+++G GPNRIGQGIEFDYCCVHASLAL+
Sbjct: 535 EFATDTAYMYSTYEEE----CEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALR 590
Query: 590 DLNIKSVMFNCNPETVSTDYDTSDTLYFEPIHFECVKSIIQRERVDGIIVHFGGQTPLKL 649
+ +++M NCNPETVSTDYDTSD LYFEP+ E V I++ E+ G+IV +GGQTPLKL
Sbjct: 591 EDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKL 650
Query: 650 AKDLAKMQAPIIGTPFKVIDIAEDREKFSLFLKELDIKQPKNGMAKSVDEAYSIANVIGF 709
A+ L P+IGT ID AEDRE+F ++ L +KQP N +++ A A IG+
Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGY 710
Query: 710 PIIVRPSYVLGGQHMQILENIEELRHYLESVTHALEISPKNPLLIDKFLEKAVELDVDAI 769
P++VRPSYVLGG+ M+I+ + +LR Y ++ A+ +S P+L+D FL+ AVE+DVDAI
Sbjct: 711 PLVVRPSYVLGGRAMEIVYDEADLRRYFQT---AVSVSNDAPVLLDHFLDDAVEVDVDAI 767
Query: 770 CDKKEVYIAGILQHIEEAGIHSGDSACFIPS-TLSPEILDEIERVSAKIALHLGVVGLLN 828
CD + V I GI++HIE+AG+HSGDSAC +P+ TLS EI D + + K+A L V GL+N
Sbjct: 768 CDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMN 827
Query: 829 IQFAVHQNSLYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLEDLKEALKFYDKKNIV 888
+QFAV N +YLIEVNPRA+RTVPF+SKA GVPLAKVA RVM + L E
Sbjct: 828 VQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAE----------- 876
Query: 889 GYSKGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTGEVMGIARSLGLAFFKAQT 948
+GV K +P + ++KE V PFNK G D +LGPEM+STGEVMG+ R+ AF KAQ
Sbjct: 877 ---QGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQL 933
Query: 949 ACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVQLGFELCATEGTHKALEKAGVKSLKVLK 1008
+ +K G +S+++ DKE L +L++ GFEL AT GT L +AG+ V K
Sbjct: 934 GSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNK 993
Query: 1009 ISEGRPNIMDLMMNGEISMAIN-TSDHKSQDDAKLIRASVLKNHVSYFTTLSTIEVLLLA 1067
+ EGRP+I D + NGE + IN TS ++ +D+++IR S L+ V Y TTL+ +A
Sbjct: 994 VHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMA 1053
Query: 1068 LEESSKEDELLALQD 1082
L + E +++++Q+
Sbjct: 1054 LNADATE-KVISVQE 1067
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1058
Score = 1065 bits (2755), Expect = 0.0
Identities = 579/1095 (52%), Positives = 752/1095 (67%), Gaps = 56/1095 (5%)
Query: 1 MPKRTDISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINSNPATVMTDPEF 60
MPKRTDI +IL++G+GPIVIGQACEFDYSG Q+CK L+ GYRVI +NSNPAT+MTDPE
Sbjct: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEM 60
Query: 61 SHQTYIQPITPENIATIIEKEKIDAILPTMGGQTALNAVMQMHQKGMLE--GVELLGAKI 118
+ TYI+PI E + IIEKE+ DA+LPTMGGQTALN +++ ++G+LE GV ++GA
Sbjct: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
Query: 119 EAIKKGEDRQAFKEAMLKIGMDLPKGRYAYTELEALEAINEIGFPAIIRASFTLAGGGSG 178
+AI K EDR+ F AM KIG++ + A+T EAL ++GFP IIR SFT+ G G G
Sbjct: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180
Query: 179 VAYNIEEFQELAKNALDASPINEILIEESLLGWKEYEMEVIRDSKDNCIIVCCIENIDPM 238
+AYN EEF+E+ LD SP E+LI+ESL+GWKEYEMEV+RD DNCIIVC IEN D M
Sbjct: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
Query: 239 GVHTGDSITIAPSLTLTDKEYQRMRDASFAILREIGVDTGGSNVQFAIHPETLRMVVIEM 298
G+HTGDSIT+AP+ TLTDKEYQ MR+AS A+LREIGV+TGGSNVQFA++P+ R++VIEM
Sbjct: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300
Query: 299 NPRVSRSSALASKATGFPIAKVATMLAVGFSLDEIQNDIT--NTPASFEPSLDYIVVKIP 356
NPRVSRSSALASKATGFPIAKVA LAVG++LDE+ NDIT TPASFEPS+DY+V KIP
Sbjct: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360
Query: 357 RFAFEKFAGVSSTLGTSMKSIGEVMAIGGNFLEALQKALCSLENNWLGFE-SLSKD---- 411
RF FEKFAG + L T MKS+GEVMAIG E+LQKAL LE GF+ +S D
Sbjct: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEA 420
Query: 412 LEAIKKEIRRPNPKRLLYIADAFRLGVCVDEVFELCQIDRWFLSQIQKLVEVEESINSSV 471
L I++E++ R+ YIADAFR G+ VD VF L IDRWFL QI++LV +EE +
Sbjct: 421 LTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG 480
Query: 472 LT--DAKKLRGLKNLGFSDARIAAKIKENENLEVSPFEVELARSNLQIVPNFEEVDTCAA 529
+T +A LR LK GF+DAR+A + V E+ R + P ++ VDTCAA
Sbjct: 481 ITGLNADFLRQLKRKGFADARLA------KLAGVREAEIRKLRDQYDLHPVYKRVDTCAA 534
Query: 530 EFLSLTPYLYSTYAPNPLPPIENKQEKKEKKILIIGSGPNRIGQGIEFDYCCVHASLALK 589
EF + T Y+YSTY E +KI+++G GPNRIGQGIEFDYCCVHASLAL+
Sbjct: 535 EFATDTAYMYSTYEEE----CEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALR 590
Query: 590 DLNIKSVMFNCNPETVSTDYDTSDTLYFEPIHFECVKSIIQRERVDGIIVHFGGQTPLKL 649
+ +++M NCNPETVSTDYDTSD LYFEP+ E V I++ E+ G+IV +GGQTPLKL
Sbjct: 591 EDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKL 650
Query: 650 AKDLAKMQAPIIGTPFKVIDIAEDREKFSLFLKELDIKQPKNGMAKSVDEAYSIANVIGF 709
A+ L P+IGT ID AEDRE+F ++ L +KQP N +++ A A IG+
Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGY 710
Query: 710 PIIVRPSYVLGGQHMQILENIEELRHYLESVTHALEISPKNPLLIDKFLEKAVELDVDAI 769
P++VR + M+I+ + +LR Y ++ +L+D FL+ AVE+DVDAI
Sbjct: 711 PLVVRAA-------MEIVYDEADLRRYFQTA-----------VLLDHFLDDAVEVDVDAI 752
Query: 770 CDKKEVYIAGILQHIEEAGIHSGDSACFIPS-TLSPEILDEIERVSAKIALHLGVVGLLN 828
CD + V I GI++HIE+AG+HSGDSAC +P+ TLS EI D + + K+A L V GL+N
Sbjct: 753 CDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMN 812
Query: 829 IQFAVHQNSLYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLEDLKEALKFYDKKNIV 888
+QFAV N +YLIEVNPRA+RTVPF+SKA GVPLAKVA RVM + L E
Sbjct: 813 VQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAE----------- 861
Query: 889 GYSKGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTGEVMGIARSLGLAFFKAQT 948
+GV K +P + ++KE V PFNK G D +LGPEM+STGEVMG+ R+ AF KAQ
Sbjct: 862 ---QGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQL 918
Query: 949 ACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVQLGFELCATEGTHKALEKAGVKSLKVLK 1008
+ +K G +S+++ DKE L +L++ GFEL AT GT L +AG+ V K
Sbjct: 919 GSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNK 978
Query: 1009 ISEGRPNIMDLMMNGEISMAIN-TSDHKSQDDAKLIRASVLKNHVSYFTTLSTIEVLLLA 1067
+ EGRP+I D + NGE + IN TS ++ +D+++IR S L+ V Y TTL+ +A
Sbjct: 979 VHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMA 1038
Query: 1068 LEESSKEDELLALQD 1082
L + E +++++Q+
Sbjct: 1039 LNADATE-KVISVQE 1052
>pdb|1BNC|A Chain A, Mol_id: 1; Molecule: Biotin Carboxylase; Chain: A, B; Ec:
6.3.4.14
pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
pdb|1BNC|B Chain B, Mol_id: 1; Molecule: Biotin Carboxylase; Chain: A, B; Ec:
6.3.4.14
pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
Length = 449
Score = 49.7 bits (117), Expect = 2e-06
Identities = 40/183 (21%), Positives = 79/183 (42%), Gaps = 11/183 (6%)
Query: 693 MAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQILENIEELRHYLESVTHALEISPKNPL 752
+ +D+ +IA IG+P+I++ S GG+ M+++ EL + + + N +
Sbjct: 138 LGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDM 197
Query: 753 L-IDKFLEKAVELDVDAICDKK--EVYIAG---ILQHIEEAGIHSGDSACFIPSTLSPEI 806
+ ++K+LE +++ + D + +Y+A +Q + + + ++PE+
Sbjct: 198 VYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAP-----GITPEL 252
Query: 807 LDEIERVSAKIALHLGVVGLLNIQFAVHQNSLYLIEVNPRASRTVPFLSKALGVPLAKVA 866
I AK + +G G +F Y IE+N R P GV L K
Sbjct: 253 RRYIGERCAKACVDIGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQ 312
Query: 867 TRV 869
R+
Sbjct: 313 LRI 315
>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
Length = 452
Score = 48.1 bits (113), Expect = 5e-06
Identities = 39/183 (21%), Positives = 79/183 (42%), Gaps = 11/183 (6%)
Query: 693 MAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQILENIEELRHYLESVTHALEISPKNPL 752
+ +D+ +IA IG+P+I++ S GG+ M+++ EL + + + N +
Sbjct: 141 LGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDM 200
Query: 753 L-IDKFLEKAVELDVDAICDKK--EVYIAG---ILQHIEEAGIHSGDSACFIPSTLSPEI 806
+ ++K+LE +++ + D + +Y+A +Q + + + ++PE+
Sbjct: 201 VYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAP-----GITPEL 255
Query: 807 LDEIERVSAKIALHLGVVGLLNIQFAVHQNSLYLIEVNPRASRTVPFLSKALGVPLAKVA 866
I AK + +G G +F Y I++N R P GV L K
Sbjct: 256 RRYIGERCAKACVDIGYRGAGTFEFLFENGEFYFIKMNTRIQVEHPVTEMITGVDLIKEQ 315
Query: 867 TRV 869
R+
Sbjct: 316 LRI 318
>pdb|1KJ8|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ8|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ9|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJ9|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJI|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJI|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJJ|A Chain A, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJJ|B Chain B, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJQ|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
pdb|1KJQ|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
Length = 391
Score = 41.6 bits (96), Expect = 5e-04
Identities = 44/193 (22%), Positives = 85/193 (43%), Gaps = 23/193 (11%)
Query: 4 RTDISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINSNP-ATVMTDPEFSH 62
R + ++L+GSG + G + + LG VI ++ A M SH
Sbjct: 8 RPAATRVMLLGSGEL-----------GKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSH 56
Query: 63 QTYIQPITPENIATIIEKEKIDAILPTMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIK 122
I + + + ++E EK I+P + A + ++Q+ ++G+ K+ +
Sbjct: 57 --VINMLDGDALRRVVELEKPHYIVPEIEA-IATDMLIQLEEEGLNVVPCARATKLTMNR 113
Query: 123 KGEDRQAFKEAMLKIGMDLPKGRYAYTELEAL--EAINEIGFPAIIRASFTLAGGGSGVA 180
+G R A +E + LP Y + + E+L EA+ +IG+P I++ + +G G
Sbjct: 114 EGIRRLAAEE------LQLPTSTYRFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFI 167
Query: 181 YNIEEFQELAKNA 193
+ E+ + K A
Sbjct: 168 RSAEQLAQAWKYA 180
Score = 39.7 bits (91), Expect = 0.002
Identities = 30/144 (20%), Positives = 63/144 (42%), Gaps = 4/144 (2%)
Query: 707 IGFPIIVRPSYVLGGQHMQILENIEELRHYLESVTHALEISPKNPLLIDKFLEKAVELDV 766
IG+P IV+P G+ + + E+L + + ++++ ++ E+ +
Sbjct: 147 IGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGR-AGAGRVIVEGVVKFDFEITL 205
Query: 767 DAICDKKEVYIAGILQHIEEAGIHSGDSACFIPSTLSPEILDEIERVSAKIALHLGVVGL 826
+ V+ + H +E G + + P +SP L+ + ++ K+ L LG GL
Sbjct: 206 LTVSAVDGVHFCAPVGHRQEDGDY---RESWQPQQMSPLALERAQEIARKVVLALGGYGL 262
Query: 827 LNIQFAVHQNSLYLIEVNPRASRT 850
++ V + + EV+PR T
Sbjct: 263 FGVELFVCGDEVIFSEVSPRPHDT 286
>pdb|1EZ1|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
pdb|1EZ1|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
pdb|1EYZ|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EYZ|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
Length = 392
Score = 41.6 bits (96), Expect = 5e-04
Identities = 44/193 (22%), Positives = 85/193 (43%), Gaps = 23/193 (11%)
Query: 4 RTDISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINSNP-ATVMTDPEFSH 62
R + ++L+GSG + G + + LG VI ++ A M SH
Sbjct: 9 RPAATRVMLLGSGEL-----------GKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSH 57
Query: 63 QTYIQPITPENIATIIEKEKIDAILPTMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIK 122
I + + + ++E EK I+P + A + ++Q+ ++G+ K+ +
Sbjct: 58 --VINMLDGDALRRVVELEKPHYIVPEIEA-IATDMLIQLEEEGLNVVPCARATKLTMNR 114
Query: 123 KGEDRQAFKEAMLKIGMDLPKGRYAYTELEAL--EAINEIGFPAIIRASFTLAGGGSGVA 180
+G R A +E + LP Y + + E+L EA+ +IG+P I++ + +G G
Sbjct: 115 EGIRRLAAEE------LQLPTSTYRFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFI 168
Query: 181 YNIEEFQELAKNA 193
+ E+ + K A
Sbjct: 169 RSAEQLAQAWKYA 181
Score = 39.7 bits (91), Expect = 0.002
Identities = 30/144 (20%), Positives = 63/144 (42%), Gaps = 4/144 (2%)
Query: 707 IGFPIIVRPSYVLGGQHMQILENIEELRHYLESVTHALEISPKNPLLIDKFLEKAVELDV 766
IG+P IV+P G+ + + E+L + + ++++ ++ E+ +
Sbjct: 148 IGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGR-AGAGRVIVEGVVKFDFEITL 206
Query: 767 DAICDKKEVYIAGILQHIEEAGIHSGDSACFIPSTLSPEILDEIERVSAKIALHLGVVGL 826
+ V+ + H +E G + + P +SP L+ + ++ K+ L LG GL
Sbjct: 207 LTVSAVDGVHFCAPVGHRQEDGDY---RESWQPQQMSPLALERAQEIARKVVLALGGYGL 263
Query: 827 LNIQFAVHQNSLYLIEVNPRASRT 850
++ V + + EV+PR T
Sbjct: 264 FGVELFVCGDEVIFSEVSPRPHDT 287
>pdb|1GSO|A Chain A, Glycinamide Ribonucleotide Synthetase (Gar-Syn) From E.
Coli
Length = 431
Score = 38.1 bits (87), Expect = 0.005
Identities = 80/335 (23%), Positives = 129/335 (37%), Gaps = 83/335 (24%)
Query: 79 EKEKIDAILPTMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKG----EDRQAFKEAM 134
+ EKID L +G + L KG+++ G KI G E +AF +
Sbjct: 63 QNEKID--LTIVGPEAPL-------VKGVVDTFRAAGLKIFGPTAGAAQLEGSKAFTKDF 113
Query: 135 LKIGMDLPKGRYA-YTELE-ALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKN 192
L +P Y +TE+E AL + E G P +I+A AG G VA +EE + +
Sbjct: 114 LA-RHKIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHD 172
Query: 193 ALDASPINE----ILIEESLLGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITI 248
L + + I+IEE L G + + I++ E++ PM
Sbjct: 173 MLAGNAFGDAGHRIVIEEFLDG-----------EEASFIVMVDGEHVLPMA--------- 212
Query: 249 APSLTLTDKEYQRMRDASFAILREIGVDTGGSN-------VQFAIHPETLRMVVIEMNPR 301
T ++++R+ D ++ G +TGG V +H T+ ++ P
Sbjct: 213 ------TSQDHKRVGD------KDTGPNTGGMGAYSPAPVVTDDVHQRTMERIIW---PT 257
Query: 302 VSRSSALASKATGFPIAKVATMLAVGFSLDEIQN-----------DITNTPASFEPSLDY 350
V +A + TGF L G +D+ N D+ P D
Sbjct: 258 VKGMAAEGNTYTGF--------LYAGLMIDKQGNPKVIEFNCRFGDLETQPIMLRMKSD- 308
Query: 351 IVVKIPRFAFEKFAGVSSTLGTSMKSIGEVMAIGG 385
+V++ A E ++ S+G VMA GG
Sbjct: 309 -LVELCLAACESKLDEKTSEWDERASLGVVMAAGG 342
>pdb|1CQJ|B Chain B, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|E Chain E, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQI|B Chain B, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|E Chain E, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
Length = 385
Score = 32.7 bits (73), Expect = 0.22
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 16/114 (14%)
Query: 131 KEAMLKIGMDLPKGRYAYTELEALEAINEIGF-PAIIRASFTLAG----GGSGVAYNIEE 185
K+ + G+ P G T EA EA ++IG P +++ G GG V + E+
Sbjct: 9 KQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKED 68
Query: 186 FQELAKNAL-----------DASPINEILIEESLLGWKEYEMEVIRDSKDNCII 228
+ A+N L + P+N+IL+E + KE + + D ++
Sbjct: 69 IRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVV 122
>pdb|1JLL|B Chain B, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|E Chain E, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 388
Score = 32.7 bits (73), Expect = 0.22
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 16/114 (14%)
Query: 131 KEAMLKIGMDLPKGRYAYTELEALEAINEIGF-PAIIRASFTLAG----GGSGVAYNIEE 185
K+ + G+ P G T EA EA ++IG P +++ G GG V + E+
Sbjct: 9 KQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKED 68
Query: 186 FQELAKNAL-----------DASPINEILIEESLLGWKEYEMEVIRDSKDNCII 228
+ A+N L + P+N+IL+E + KE + + D ++
Sbjct: 69 IRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVV 122
>pdb|1JKJ|B Chain B, E. Coli Scs
pdb|1SCU|B Chain B, Succinyl-Coa Synthetase (Succinate-Coa Ligase)
(Adp-Forming) (E.C.6.2.1.5)
pdb|1SCU|E Chain E, Succinyl-Coa Synthetase (Succinate-Coa Ligase)
(Adp-Forming) (E.C.6.2.1.5)
pdb|2SCU|B Chain B, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|E Chain E, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|1JKJ|E Chain E, E. Coli Scs
Length = 388
Score = 32.7 bits (73), Expect = 0.22
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 16/114 (14%)
Query: 131 KEAMLKIGMDLPKGRYAYTELEALEAINEIGF-PAIIRASFTLAG----GGSGVAYNIEE 185
K+ + G+ P G T EA EA ++IG P +++ G GG V + E+
Sbjct: 9 KQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKED 68
Query: 186 FQELAKNAL-----------DASPINEILIEESLLGWKEYEMEVIRDSKDNCII 228
+ A+N L + P+N+IL+E + KE + + D ++
Sbjct: 69 IRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVV 122
>pdb|1IOW| Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A Phosphoryl
Phosphinate
Length = 306
Score = 30.8 bits (68), Expect = 0.85
Identities = 41/185 (22%), Positives = 74/185 (39%), Gaps = 14/185 (7%)
Query: 698 DEAYSIANVIGFPIIVRPSYVLGGQHMQILENIEELRHYLESVTHALEISPKNPLLIDKF 757
D+ + + +G P+IV+PS M + L+ L L +LI+K+
Sbjct: 128 DKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALR-----LAFQHDEEVLIEKW 182
Query: 758 L---EKAVELDVDAICDKKEVYIAGILQHIEEAGIHSGDSACFIPSTLSPEILDEIERVS 814
L E V + + I + +G + EA S ++ F P+ L ++ +
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQPSGTF-YDYEAKFLSDETQYFCPAGLEASQEANLQALV 241
Query: 815 AKIALHLGVVGLLNIQFAVHQN-SLYLIEVNPRASRT----VPFLSKALGVPLAKVATRV 869
K LG G I + + YL+E N T VP ++ G+ +++ R+
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301
Query: 870 MVLED 874
+ L D
Sbjct: 302 LELAD 306
>pdb|1TMO| Trimethylamine N-Oxide Reductase From Shewanella Massilia
Length = 829
Score = 30.4 bits (67), Expect = 1.1
Identities = 23/91 (25%), Positives = 43/91 (46%), Gaps = 2/91 (2%)
Query: 820 HLGVVGLLNIQFAVHQNSLYLIEVNPRASRTVPFLS-KALGVPLAKVATRVMVLEDLKEA 878
H L ++ V Q + +I ++P ++T +L + L V T ++ + +
Sbjct: 234 HESFAYLAQLKEKVKQGKIRVISIDPVVTKTQAYLGCEQLYVNPQTDVTLMLAIAHEMIS 293
Query: 879 LKFYDKKNIVGYSKGVYKPKMPHFVALKEAV 909
K YD K I GYS G ++ +P+ + K+ V
Sbjct: 294 KKLYDDKFIQGYSLG-FEEFVPYVMGTKDGV 323
>pdb|1IOV| Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl
Phosphonate
pdb|2DLN| Mol_id: 1; Molecule: D-Alanine--D-Alanine Ligase; Chain: Null; Ec:
6.3.2.4
Length = 306
Score = 30.4 bits (67), Expect = 1.1
Identities = 41/185 (22%), Positives = 74/185 (39%), Gaps = 14/185 (7%)
Query: 698 DEAYSIANVIGFPIIVRPSYVLGGQHMQILENIEELRHYLESVTHALEISPKNPLLIDKF 757
D+ + + +G P+IV+PS M + L+ L L +LI+K+
Sbjct: 128 DKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALR-----LAFQHDEEVLIEKW 182
Query: 758 L---EKAVELDVDAICDKKEVYIAGILQHIEEAGIHSGDSACFIPSTLSPEILDEIERVS 814
L E V + + I + +G + EA S ++ F P+ L ++ +
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQPSGTF-YDYEAKYLSDETQYFCPAGLEASQEANLQALV 241
Query: 815 AKIALHLGVVGLLNIQFAVHQN-SLYLIEVNPRASRT----VPFLSKALGVPLAKVATRV 869
K LG G I + + YL+E N T VP ++ G+ +++ R+
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301
Query: 870 MVLED 874
+ L D
Sbjct: 302 LELAD 306
>pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of
Vancomycin-Resistant Leuconostoc Mesenteroides
pdb|1EHI|B Chain B, D-Alanine:d-Lactate Ligase (Lmddl2) Of
Vancomycin-Resistant Leuconostoc Mesenteroides
Length = 377
Score = 28.5 bits (62), Expect = 4.2
Identities = 37/153 (24%), Positives = 66/153 (42%), Gaps = 31/153 (20%)
Query: 727 LENIEELRHYLESVTHALEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEE 786
+ + Y E+++ + + K +LI++ + A EL+V I + + + + E
Sbjct: 190 ISRVTNAEEYTEALSDSFQYDYK--VLIEEAVNGARELEVGVIGNDQPL--------VSE 239
Query: 787 AGIH------SGD------------SACF--IPSTLSPEILDEIERVSAKIALHLGVVGL 826
G H SGD SA IP+ LSPE+ E+++++ L + G
Sbjct: 240 IGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGE 299
Query: 827 LNIQFAVHQNSL-YLIEVNPRASRTVPFLSKAL 858
+ F + +N++ YL E N T L K L
Sbjct: 300 ARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRL 332
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 28.5 bits (62), Expect = 4.2
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Query: 760 KAVELDVDAICDKKEVYIAGILQHIE-EAGIHSGDSACFIPSTLSPEILDEIERVSAKIA 818
K++EL V ICD + ++A + E ++ +H G+ P ++ I+R A
Sbjct: 67 KSIELYVGDICDFE--FLAESFKSFEPDSVVHFGEQRS-APYSM-------IDRSRAVYT 116
Query: 819 LHLGVVGLLNIQFAVHQ--NSLYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLEDLK 876
H V+G LN+ FA+ + +L+++ P + G R L K
Sbjct: 117 QHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPK 176
Query: 877 EALKFY 882
+A FY
Sbjct: 177 QASSFY 182
>pdb|1G8T|A Chain A, Sm Endonuclease From Seratia Marcenscens At 1.1 A
Resolution
pdb|1G8T|B Chain B, Sm Endonuclease From Seratia Marcenscens At 1.1 A
Resolution
pdb|1SMN|A Chain A, Nuclease, Dnase, Rnase, Sugar-Nonspecific Nuclease Mol_id:
1; Molecule: Extracellular Endonuclease; Chain: A, B;
Ec: 3.1.30.2; Engineered: Yes
pdb|1SMN|B Chain B, Nuclease, Dnase, Rnase, Sugar-Nonspecific Nuclease Mol_id:
1; Molecule: Extracellular Endonuclease; Chain: A, B;
Ec: 3.1.30.2; Engineered: Yes
pdb|1QAE|A Chain A, The Active Site Of Serratia Endonuclease Contains A
Conserved Magnesium-Water Cluster
pdb|1QAE|B Chain B, The Active Site Of Serratia Endonuclease Contains A
Conserved Magnesium-Water Cluster
Length = 245
Score = 28.1 bits (61), Expect = 5.5
Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 3/49 (6%)
Query: 4 RTDISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINSNPA 52
R DIS++ + +GP+ + GTQ T+ S ++VI IN++PA
Sbjct: 136 RADISSVYTV-TGPLYERDMGKLP--GTQKAHTIPSAYWKVIFINNSPA 181
>pdb|1QL0|A Chain A, Sm Endonuclease From Seratia Marcenscens At Atomic
Resolution
pdb|1QL0|B Chain B, Sm Endonuclease From Seratia Marcenscens At Atomic
Resolution
Length = 241
Score = 28.1 bits (61), Expect = 5.5
Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 3/49 (6%)
Query: 4 RTDISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINSNPA 52
R DIS++ + +GP+ + GTQ T+ S ++VI IN++PA
Sbjct: 132 RADISSVYTV-TGPLYERDMGKLP--GTQKAHTIPSAYWKVIFINNSPA 177
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
Length = 473
Score = 27.7 bits (60), Expect = 7.2
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 20/118 (16%)
Query: 885 KNIVGYSKGVYKPKMPHFVALKEAVFPFNKLYGSDLI------LGPEMKSTGEVM---GI 935
K++ +S+ Y P ++ +K V L+G + + LG E G V +
Sbjct: 34 KSLTKFSE-CYGPVFTVYLGMKPTVV----LHGYEAVKEALVDLGEEFAGRGSVPILEKV 88
Query: 936 ARSLGLAFFKAQT------ACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVQLGFELC 987
++ LG+AF A+T ++N G+ SI+D+ +EEA L++ L + C
Sbjct: 89 SKGLGIAFSNAKTWKEMRRFSLMTLRNFGMGKRSIEDRIQEEARCLVEELRKTNASPC 146
>pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-Form
pdb|1GDE|B Chain B, Crystal Structure Of Pyrococcus Protein A-1 E-Form
pdb|1GD9|A Chain A, Crystall Structure Of Pyrococcus Protein-A1
pdb|1GD9|B Chain B, Crystall Structure Of Pyrococcus Protein-A1
Length = 389
Score = 27.3 bits (59), Expect = 9.4
Identities = 22/54 (40%), Positives = 29/54 (52%), Gaps = 6/54 (11%)
Query: 729 NIEELRHYLESVTHALEI-SPKNP---LLIDKFLEKAVELDV--DAICDKKEVY 776
N++EL+ Y+ T AL I SP NP +L K LE+ + V D I EVY
Sbjct: 149 NVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVY 202
>pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
Length = 580
Score = 27.3 bits (59), Expect = 9.4
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 665 FKVIDIAED--REKFSLFLKELDI-KQPKNGMAKSVDE-------AYSIANVIGFP 710
F+++ I E+ REKF FL+ L+ P G+A +D + SI VI FP
Sbjct: 494 FRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFP 549
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
Length = 605
Score = 27.3 bits (59), Expect = 9.4
Identities = 12/41 (29%), Positives = 21/41 (50%)
Query: 287 HPETLRMVVIEMNPRVSRSSALASKATGFPIAKVATMLAVG 327
H E +R +V+ R+ L + G P+ K+A +A+G
Sbjct: 167 HEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALG 207
>pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
pdb|1DJU|B Chain B, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
Length = 388
Score = 27.3 bits (59), Expect = 9.4
Identities = 22/54 (40%), Positives = 29/54 (52%), Gaps = 6/54 (11%)
Query: 729 NIEELRHYLESVTHALEI-SPKNP---LLIDKFLEKAVELDV--DAICDKKEVY 776
N++EL+ Y+ T AL I SP NP +L K LE+ + V D I EVY
Sbjct: 148 NVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVY 201
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.137 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,899,992
Number of Sequences: 13198
Number of extensions: 249001
Number of successful extensions: 684
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 30
length of query: 1085
length of database: 2,899,336
effective HSP length: 98
effective length of query: 987
effective length of database: 1,605,932
effective search space: 1585054884
effective search space used: 1585054884
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)