BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644723|ref|NP_206893.1| hypothetical protein
[Helicobacter pylori 26695]
         (146 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1QUB|A  Chain A, Crystal Structure Of The Glycosylated F...    25  4.7
pdb|1C1Z|A  Chain A, Crystal Structure Of Human Beta-2-Glyco...    25  4.7

>pdb|1QUB|A Chain A, Crystal Structure Of The Glycosylated Five-Domain Human
           Beta2-Glycoprotein I Purified From Blood Plasma
          Length = 319

 Score = 24.6 bits (52), Expect = 4.7
 Identities = 11/29 (37%), Positives = 16/29 (54%), Gaps = 3/29 (10%)

Query: 115 PKHWLFGHENILCK---EWVKIESHFEVK 140
           P+H +FG++ I C     W K+    EVK
Sbjct: 157 PQHAMFGNDTITCTTHGNWTKLPECREVK 185



>pdb|1C1Z|A Chain A, Crystal Structure Of Human Beta-2-Glycoprotein-I
           (Apolipoprotein-H)
          Length = 326

 Score = 24.6 bits (52), Expect = 4.7
 Identities = 11/29 (37%), Positives = 16/29 (54%), Gaps = 3/29 (10%)

Query: 115 PKHWLFGHENILCK---EWVKIESHFEVK 140
           P+H +FG++ I C     W K+    EVK
Sbjct: 157 PQHAMFGNDTITCTTHGNWTKLPECREVK 185



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.323    0.139    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 911,566
Number of Sequences: 13198
Number of extensions: 35260
Number of successful extensions: 57
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 2
length of query: 146
length of database: 2,899,336
effective HSP length: 80
effective length of query: 66
effective length of database: 1,843,496
effective search space: 121670736
effective search space used: 121670736
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)