BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645537|ref|NP_207713.1| glyceraldehyde-3-phosphate
dehydrogenase (gap) [Helicobacter pylori 26695]
(332 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1CER|P Chain P, Glycolysis, Oxidoreductase, Nad Mol_id:... 254 1e-68
pdb|1HDG|O Chain O, Holo-D-Glyceraldehyde-3-Phosphate Dehyd... 253 2e-68
pdb|1GD1|O Chain O, holo-D-Glyceraldehyde-3-Phosphate Dehyd... 251 8e-68
pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenas... 250 1e-67
pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenas... 247 1e-66
pdb|1JN0|A Chain A, Crystal Structure Of The Non-Regulatory... 224 8e-60
pdb|1GAD|O Chain O, Mol_id: 1; Molecule: D-Glyceraldehyde-3... 224 1e-59
pdb|1GAE|O Chain O, Mol_id: 1; Molecule: D-Glyceraldehyde-3... 222 5e-59
pdb|1GPD|G Chain G, D-Glyceraldehyde-3-Phosphate Dehydrogen... 221 7e-59
pdb|4GPD|1 Chain 1, Apo-D-Gyceraldehyde-3-Phosphate Dehydro... 221 7e-59
pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phos... 220 2e-58
pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3... 219 3e-58
pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehy... 219 3e-58
pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal ... 217 2e-57
pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethyla... 216 3e-57
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Ph... 214 1e-56
pdb|1GYP|A Chain A, Mol_id: 1; Molecule: Glyceraldehyde-3-P... 214 1e-56
pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-... 213 3e-56
pdb|1GGA|A Chain A, D-Glyceraldehyde-3-Phosphate Dehydrogen... 209 3e-55
pdb|1CF2|O Chain O, Three-Dimensional Structure Of D-Glycer... 36 0.005
pdb|1B7G|O Chain O, Glyceraldehyde 3-Phosphate Dehydrogenas... 35 0.012
pdb|1GNL|A Chain A, Hybrid Cluster Protein From Desulfovibr... 28 1.5
pdb|1GN9|A Chain A, Hybrid Cluster Protein From Desulfovibr... 28 1.5
pdb|2CST|A Chain A, Aspartate Aminotransferase (Caspat) (E.... 27 3.2
pdb|1AAT| Cytosolic Aspartate Aminotransferase (E.C.2.6.1... 27 3.2
pdb|1B3Q|B Chain B, Crystal Structure Of Chea-289, A Signal... 27 4.2
pdb|1I5D|A Chain A, Structure Of Chea Domain P4 In Complex ... 27 4.2
pdb|1I58|A Chain A, Structure Of The Histidine Kinase Chea ... 27 4.2
>pdb|1CER|P Chain P, Glycolysis, Oxidoreductase, Nad Mol_id: 1; Molecule:
Holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase; Chain:
O, P, Q, R; Synonym: Gapdh; Ec: 1.2.1.12; Engineered:
Yes
pdb|1CER|Q Chain Q, Glycolysis, Oxidoreductase, Nad Mol_id: 1; Molecule:
Holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase; Chain:
O, P, Q, R; Synonym: Gapdh; Ec: 1.2.1.12; Engineered:
Yes
pdb|1CER|R Chain R, Glycolysis, Oxidoreductase, Nad Mol_id: 1; Molecule:
Holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase; Chain:
O, P, Q, R; Synonym: Gapdh; Ec: 1.2.1.12; Engineered:
Yes
pdb|1CER|O Chain O, Glycolysis, Oxidoreductase, Nad Mol_id: 1; Molecule:
Holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase; Chain:
O, P, Q, R; Synonym: Gapdh; Ec: 1.2.1.12; Engineered:
Yes
Length = 331
Score = 254 bits (648), Expect = 1e-68
Identities = 146/338 (43%), Positives = 211/338 (62%), Gaps = 21/338 (6%)
Query: 1 MKIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDPANWEILAYLLEHDSVHGLLPKEV 60
MK+ INGFGRIGR V R + R +EV IND + + LA+LL++DS++ P EV
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRG-----VEVALINDLTDNKTLAHLLKYDSIYHRFPGEV 55
Query: 61 RYSNYKLIIGSLEIPVFNSIKDLK-------GVDVIIECSGKFLEPKTLENYLLLGAKKV 113
Y + L + I ++KD K GV V+IE +G F + + +L GAKKV
Sbjct: 56 AYDDQYLYVDGKAIRA-TAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKV 114
Query: 114 LLSAPFMGEYDEKQYPTLVYGVNHFCYQ--NQAIVSNASCTTNAIAPICAILDKAFKIKE 171
+++AP GE T+V GVNH Y I+SNASCTTN++AP+ +L++AF +++
Sbjct: 115 IITAPAKGEDI-----TIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEK 169
Query: 172 GMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHS 231
++TT+HSYT+DQ+L+DL H D RR+RAAA NIIPTTT AA A VLP+LK + G +
Sbjct: 170 ALMTTVHSYTNDQRLLDLPHK-DLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMA 228
Query: 232 VRVPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHS 291
+RVP+ S+ D++ L+++ + +N L A++G LKG+L E V D + +PHS
Sbjct: 229 LRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHS 288
Query: 292 VIIAPDLTFTLENMVKIMGWYDNEWGYSNRLVDMAQFM 329
I+ LT L NMVK+ WYDNEWGY+NR+ D+ + +
Sbjct: 289 SIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELV 326
>pdb|1HDG|O Chain O, Holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12) (Synchrotron X-Ray Diffraction)
pdb|1HDG|Q Chain Q, Holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12) (Synchrotron X-Ray Diffraction)
Length = 332
Score = 253 bits (647), Expect = 2e-68
Identities = 152/337 (45%), Positives = 214/337 (63%), Gaps = 18/337 (5%)
Query: 2 KIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDPANWEILAYLLEHDSVHGLLPKEVR 61
++ INGFGRIGR V R I ER NP +EV+ IND + + LA+LL++DSVH P +V
Sbjct: 2 RVAINGFGRIGRLVYRIIYERK--NPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVE 59
Query: 62 YSNYKLIIGSLEIPVFNSI-------KDLKGVDVIIECSGKFLEPKTLENYLLLGAKKVL 114
Y+ LI+ EI VF KDL GVD +IE +G F + E +L GAKKV+
Sbjct: 60 YTENSLIVDGKEIKVFAEPDPSKLPWKDL-GVDFVIESTGVFRNREKAELHLQAGAKKVI 118
Query: 115 LSAPFMGEYDEKQYPTLVYGVNHFCYQNQ-AIVSNASCTTNAIAPICAILDKAFKIKEGM 173
++AP GE T+V G N + + I+S ASCTTN+IAPI +L + F I GM
Sbjct: 119 ITAPAKGEDI-----TVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGM 173
Query: 174 LTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVR 233
LTT+HSYT+DQ+++DL H D RR+RAAA NIIPTTT AA A+ V+P +K K+ G ++R
Sbjct: 174 LTTVHSYTNDQRVLDLPHK-DLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIR 232
Query: 234 VPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHSVI 293
VP+ D S+ DL++ +EK+ + +N ++ EA++G LKG++ + + VSSD I S I
Sbjct: 233 VPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGI 292
Query: 294 IAPDLTFTL-ENMVKIMGWYDNEWGYSNRLVDMAQFM 329
+T + +VK+ WYDNE+GYSNR+VD + +
Sbjct: 293 FDATITNVIGGKLVKVASWYDNEYGYSNRVVDTLELL 329
>pdb|1GD1|O Chain O, holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|1GD1|P Chain P, holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|1GD1|Q Chain Q, holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|1GD1|R Chain R, holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|2GD1|O Chain O, apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|2GD1|P Chain P, apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|2GD1|Q Chain Q, apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|2GD1|R Chain R, apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
Length = 334
Score = 251 bits (641), Expect = 8e-68
Identities = 147/339 (43%), Positives = 216/339 (63%), Gaps = 21/339 (6%)
Query: 1 MKIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDPANWEILAYLLEHDSVHGLLPKEV 60
+K+ INGFGRIGR V RA L+ NP +EV+ +ND + LA+LL++DSVHG L EV
Sbjct: 2 VKVGINGFGRIGRNVFRAALK----NPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEV 57
Query: 61 RYSNYKLIIGSLEIPVFNSIKDLK-------GVDVIIECSGKFLEPKTLENYLLLGAKKV 113
+ L++ EI + + +D + GVD+++E +G+F + + +L GAKKV
Sbjct: 58 SVNGNNLVVNGKEI-IVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKV 116
Query: 114 LLSAPFMGEYDEKQYPTLVYGVNHFCYQNQA--IVSNASCTTNAIAPICAILDKAFKIKE 171
++SAP E T+V GVN Y +A ++SNASCTTN +AP +L + F I
Sbjct: 117 IISAPAKNEDI-----TIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVR 171
Query: 172 GMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHS 231
GM+TT+HSYT+DQ+++DL H D RR+RAAA +IIPTTT AA A+ VLP LK K++G +
Sbjct: 172 GMMTTVHSYTNDQRILDLPHK-DLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMA 230
Query: 232 VRVPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHS 291
+RVP+ +VS++DL LEK+ + +N L A++G LKG+L + VS D+ + S
Sbjct: 231 MRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVS 290
Query: 292 VIIAPDLTFTLE-NMVKIMGWYDNEWGYSNRLVDMAQFM 329
I T ++ MVK++ WYDNE GYS+R+VD+A ++
Sbjct: 291 STIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYI 329
>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|4DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 250 bits (639), Expect = 1e-67
Identities = 146/339 (43%), Positives = 215/339 (63%), Gaps = 21/339 (6%)
Query: 1 MKIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDPANWEILAYLLEHDSVHGLLPKEV 60
+K+ INGFGRIGR V RA L+ NP +EV+ +ND LA+LL++DSVHG L EV
Sbjct: 2 VKVGINGFGRIGRNVFRAALK----NPDIEVVAVNDTGGANTLAHLLKYDSVHGRLDAEV 57
Query: 61 RYSNYKLIIGSLEIPVFNSIKDLK-------GVDVIIECSGKFLEPKTLENYLLLGAKKV 113
+ L++ EI + + +D + GVD+++E +G+F + + +L GAKKV
Sbjct: 58 SVNGNNLVVNGKEI-IVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKV 116
Query: 114 LLSAPFMGEYDEKQYPTLVYGVNHFCYQNQA--IVSNASCTTNAIAPICAILDKAFKIKE 171
++SAP E T+V GVN Y +A ++SNASCTTN +AP +L + F I
Sbjct: 117 IISAPAKNEDI-----TIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVR 171
Query: 172 GMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHS 231
GM+TT+HSYT+DQ+++D +H D RR+RAAA +IIPTTT AA A+ VLP LK K++G +
Sbjct: 172 GMMTTVHSYTNDQRILDASHK-DLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMA 230
Query: 232 VRVPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHS 291
+RVP+ +VS++DL LEK+ + +N L A++G LKG+L + VS D+ + S
Sbjct: 231 MRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVS 290
Query: 292 VIIAPDLTFTLE-NMVKIMGWYDNEWGYSNRLVDMAQFM 329
I T ++ MVK++ WYDNE GYS+R+VD+A ++
Sbjct: 291 STIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYI 329
>pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
Length = 334
Score = 247 bits (631), Expect = 1e-66
Identities = 145/339 (42%), Positives = 215/339 (62%), Gaps = 21/339 (6%)
Query: 1 MKIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDPANWEILAYLLEHDSVHGLLPKEV 60
+K+ INGFGRIGR V RA L+ NP +EV+ +N + LA+LL++DSVHG L EV
Sbjct: 2 VKVGINGFGRIGRNVFRAALK----NPDIEVVAVNGLTDANTLAHLLKYDSVHGRLDAEV 57
Query: 61 RYSNYKLIIGSLEIPVFNSIKDLK-------GVDVIIECSGKFLEPKTLENYLLLGAKKV 113
+ L++ EI + + +D + GVD+++E +G+F + + +L GAKKV
Sbjct: 58 SVNGNNLVVNGKEI-IVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKV 116
Query: 114 LLSAPFMGEYDEKQYPTLVYGVNHFCYQNQA--IVSNASCTTNAIAPICAILDKAFKIKE 171
++SAP E T+V GVN Y +A ++SNASCTTN +AP +L + F I
Sbjct: 117 IISAPAKNEDI-----TIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVR 171
Query: 172 GMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHS 231
GM+TT+HSYT+DQ+++D +H D RR+RAAA +IIPTTT AA A+ VLP LK K++G +
Sbjct: 172 GMMTTVHSYTNDQRILDASHK-DLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMA 230
Query: 232 VRVPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHS 291
+RVP+ +VS++DL LEK+ + +N L A++G LKG+L + VS D+ + S
Sbjct: 231 MRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVS 290
Query: 292 VIIAPDLTFTLE-NMVKIMGWYDNEWGYSNRLVDMAQFM 329
I T ++ MVK++ WYDNE GYS+R+VD+A ++
Sbjct: 291 STIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYI 329
>pdb|1JN0|A Chain A, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|B Chain B, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|O Chain O, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
Length = 335
Score = 224 bits (572), Expect = 8e-60
Identities = 136/337 (40%), Positives = 202/337 (59%), Gaps = 17/337 (5%)
Query: 1 MKIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDPANWEILAYLLEHDSVHGLLPKEV 60
+K+ INGFGRIGR LR + + L+V+ IND + ++LL++DS+ G +V
Sbjct: 2 LKVAINGFGRIGRNFLRCW---HGKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADV 58
Query: 61 RYSNYKLIIGSLEIPVFNSIKDLK------GVDVIIECSGKFLEPKTLENYLLLGAKKVL 114
+ + I I V + + G+D++IE +G F++ +L GAKKVL
Sbjct: 59 KTAGDSAISVGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 118
Query: 115 LSAPFMGEYDEKQYPTLVYGVNHFCYQN-QAIVSNASCTTNAIAPICAILDKAFKIKEGM 173
++AP G+ PT V GVN Y + I+SNASCTTN +AP +LD+ F I +G
Sbjct: 119 ITAPGKGDI-----PTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGT 173
Query: 174 LTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVR 233
+TT HSYT DQ+L+D +H D RR+RAA NI+PT+T AA A+ VLP LK K++G ++R
Sbjct: 174 MTTTHSYTGDQRLLDASHR-DLRRARAACLNIVPTSTGAAKAVALVLPQLKGKLNGIALR 232
Query: 234 VPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHSVI 293
VP+ +VS++DL + + KK + +N E++ LKG+L + + VS DF S
Sbjct: 233 VPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADQELKGILSVCDEPLVSIDFRCTDVSST 292
Query: 294 IAPDLTFTL-ENMVKIMGWYDNEWGYSNRLVDMAQFM 329
I LT + ++MVK++ WYDNEWGYS R+VD+A +
Sbjct: 293 IDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIV 329
>pdb|1GAD|O Chain O, Mol_id: 1; Molecule: D-Glyceraldehyde-3-Phosphate
Dehydrogenase; Chain: O, P; Ec: 1.2.1.12; Engineered:
Yes; Other_details: Wild Type, Holo Form
pdb|1GAD|P Chain P, Mol_id: 1; Molecule: D-Glyceraldehyde-3-Phosphate
Dehydrogenase; Chain: O, P; Ec: 1.2.1.12; Engineered:
Yes; Other_details: Wild Type, Holo Form
pdb|1DC6|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes.
pdb|1DC6|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes.
pdb|1DC5|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC5|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC3|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC3|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
Length = 330
Score = 224 bits (571), Expect = 1e-59
Identities = 132/332 (39%), Positives = 196/332 (58%), Gaps = 16/332 (4%)
Query: 1 MKIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDPANWEILAYLLEHDSVHGLLPKEV 60
+K+ INGFGRIGR V RA +R+D +E++ IND + + +AY+L++DS HG V
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSD----IEIVAINDLLDADYMAYMLKYDSTHGRFDGTV 57
Query: 61 RYSNYKLIIGSLEIPVF------NSIKDLKGVDVIIECSGKFLEPKTLENYLLLGAKKVL 114
+ LI+ +I V N D GVDV+ E +G FL +T ++ GAKKV+
Sbjct: 58 EVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVV 117
Query: 115 LSAPFMGEYDEKQYPTLVYGVNHFCYQNQAIVSNASCTTNAIAPICAILDKAFKIKEGML 174
++ P + P V G N Y Q IVSNASCTTN +AP+ +++ F I EG++
Sbjct: 118 MTGP-----SKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLM 172
Query: 175 TTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRV 234
TT+H+ T+ QK +D D R R A+ NIIP++T AA A+ KVLP L K+ G + RV
Sbjct: 173 TTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRV 232
Query: 235 PSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHSVII 294
P+ +VS++DL++ LEK A + I + A++G +KGVL + VS+DF + +
Sbjct: 233 PTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVF 292
Query: 295 APDLTFTL-ENMVKIMGWYDNEWGYSNRLVDM 325
L +N VK++ WYDNE GYSN+++D+
Sbjct: 293 DAKAGIALNDNFVKLVSWYDNETGYSNKVLDL 324
>pdb|1GAE|O Chain O, Mol_id: 1; Molecule: D-Glyceraldehyde-3-Phosphate
Dehydrogenase; Chain: O, P; Ec: 1.2.1.12; Engineered:
Yes; Mutation: N313t; Other_details: Holo Form
pdb|1GAE|P Chain P, Mol_id: 1; Molecule: D-Glyceraldehyde-3-Phosphate
Dehydrogenase; Chain: O, P; Ec: 1.2.1.12; Engineered:
Yes; Mutation: N313t; Other_details: Holo Form
Length = 330
Score = 222 bits (565), Expect = 5e-59
Identities = 131/332 (39%), Positives = 195/332 (58%), Gaps = 16/332 (4%)
Query: 1 MKIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDPANWEILAYLLEHDSVHGLLPKEV 60
+K+ INGFGRIGR V RA +R+D +E++ IND + + +AY+L++DS HG V
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSD----IEIVAINDLLDADYMAYMLKYDSTHGRFDGTV 57
Query: 61 RYSNYKLIIGSLEIPVF------NSIKDLKGVDVIIECSGKFLEPKTLENYLLLGAKKVL 114
+ LI+ +I V N D GVDV+ E +G FL +T ++ GAKKV+
Sbjct: 58 EVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVV 117
Query: 115 LSAPFMGEYDEKQYPTLVYGVNHFCYQNQAIVSNASCTTNAIAPICAILDKAFKIKEGML 174
++ P + P V G N Y Q IVSNASCTTN +AP+ +++ F I EG++
Sbjct: 118 MTGP-----SKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLM 172
Query: 175 TTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRV 234
TT+H+ T+ QK +D D R R A+ NIIP++T AA A+ KVLP L K+ G + RV
Sbjct: 173 TTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRV 232
Query: 235 PSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHSVII 294
P+ +VS++DL++ LEK A + I + A++G +KGVL + VS+DF + +
Sbjct: 233 PTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVF 292
Query: 295 APDLTFTL-ENMVKIMGWYDNEWGYSNRLVDM 325
L +N VK++ WYD E GYSN+++D+
Sbjct: 293 DAKAGIALNDNFVKLVSWYDTETGYSNKVLDL 324
>pdb|1GPD|G Chain G, D-Glyceraldehyde-3-Phosphate Dehydrogenase (E.C.1.2.1.12)
pdb|1GPD|R Chain R, D-Glyceraldehyde-3-Phosphate Dehydrogenase (E.C.1.2.1.12)
Length = 334
Score = 221 bits (564), Expect = 7e-59
Identities = 135/337 (40%), Positives = 195/337 (57%), Gaps = 20/337 (5%)
Query: 2 KIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDP-ANWEILAYLLEHDSVHGLLPKEV 60
KI INGFGRIGR VLRA L +V+ +NDP E + Y+ ++DS HG+ EV
Sbjct: 3 KIGINGFGRIGRLVLRAALSCG-----AQVVAVNDPFIALEYMVYMFKYDSTHGVFKGEV 57
Query: 61 RYSNYKLIIGSLEIPVFNSIK------DLKGVDVIIECSGKFLEPKTLENYLLLGAKKVL 114
+ + L++ +I VFN +K G + I+E +G F + + GAKKV+
Sbjct: 58 KMEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVV 117
Query: 115 LSAPFMGEYDEKQYPTLVYGVNHFCY-QNQAIVSNASCTTNAIAPICAILDKAFKIKEGM 173
+SAP P V GVN Y ++ +VSNASCTTN +AP+ +L + F+I EG+
Sbjct: 118 ISAP------SADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENFEIVEGL 171
Query: 174 LTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVR 233
+TT+H+ T+ QK +D D R R AA NIIP++T AA A+ KV+P L K+ G + R
Sbjct: 172 MTTVHAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFR 231
Query: 234 VPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHSVI 293
VP+ DVS++DL++ L K+ D I + AS+G L+G L + VSSDFI + S I
Sbjct: 232 VPTPDVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSI 291
Query: 294 IAPDLTFTL-ENMVKIMGWYDNEWGYSNRLVDMAQFM 329
L + VK++ WYDNE+GYS R++D+ + M
Sbjct: 292 FDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLLKHM 328
>pdb|4GPD|1 Chain 1, Apo-D-Gyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|4GPD|2 Chain 2, Apo-D-Gyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|4GPD|3 Chain 3, Apo-D-Gyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|4GPD|4 Chain 4, Apo-D-Gyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
Length = 333
Score = 221 bits (564), Expect = 7e-59
Identities = 135/337 (40%), Positives = 195/337 (57%), Gaps = 20/337 (5%)
Query: 2 KIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDP-ANWEILAYLLEHDSVHGLLPKEV 60
KI INGFGRIGR VLRA L +V+ +NDP E + Y+ ++DS HG+ EV
Sbjct: 2 KIGINGFGRIGRLVLRAALSCG-----AQVVAVNDPFIALEYMVYMFKYDSTHGVFKGEV 56
Query: 61 RYSNYKLIIGSLEIPVFNSIK------DLKGVDVIIECSGKFLEPKTLENYLLLGAKKVL 114
+ + L++ +I VFN +K G + I+E +G F + + GAKKV+
Sbjct: 57 KMEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVV 116
Query: 115 LSAPFMGEYDEKQYPTLVYGVNHFCY-QNQAIVSNASCTTNAIAPICAILDKAFKIKEGM 173
+SAP P V GVN Y ++ +VSNASCTTN +AP+ +L + F+I EG+
Sbjct: 117 ISAP------SADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENFEIVEGL 170
Query: 174 LTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVR 233
+TT+H+ T+ QK +D D R R AA NIIP++T AA A+ KV+P L K+ G + R
Sbjct: 171 MTTVHAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFR 230
Query: 234 VPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHSVI 293
VP+ DVS++DL++ L K+ D I + AS+G L+G L + VSSDFI + S I
Sbjct: 231 VPTPDVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSI 290
Query: 294 IAPDLTFTL-ENMVKIMGWYDNEWGYSNRLVDMAQFM 329
L + VK++ WYDNE+GYS R++D+ + M
Sbjct: 291 FDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLLKHM 327
>pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1SZJ|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1CRW|G Chain G, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
pdb|1CRW|R Chain R, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
Length = 333
Score = 220 bits (561), Expect = 2e-58
Identities = 134/337 (39%), Positives = 195/337 (57%), Gaps = 20/337 (5%)
Query: 2 KIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDP-ANWEILAYLLEHDSVHGLLPKEV 60
KI INGFGRIGR VLRA LE +V+ +NDP E + Y+ ++DS HG+ EV
Sbjct: 2 KIGINGFGRIGRLVLRAALEMG-----AQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEV 56
Query: 61 RYSNYKLIIGSLEIPVFNSIK------DLKGVDVIIECSGKFLEPKTLENYLLLGAKKVL 114
+ + L++ +I VFN +K G + I+E +G F + + GAKKV+
Sbjct: 57 KAEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVI 116
Query: 115 LSAPFMGEYDEKQYPTLVYGVNHFCY-QNQAIVSNASCTTNAIAPICAILDKAFKIKEGM 173
+SAP P V GVN Y ++ +VSNASCTTN +AP+ +L + F+I EG+
Sbjct: 117 ISAP------SADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGL 170
Query: 174 LTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVR 233
+TT+H+ T+ QK +D D R R AA NIIP++T AA A+ KV+P L K+ G + R
Sbjct: 171 MTTVHAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFR 230
Query: 234 VPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHSVI 293
VP+ +VS++DL++ L K+ D I + AS+G L+GVL + VS DF + S I
Sbjct: 231 VPTPNVSVVDLTVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSI 290
Query: 294 IAPDLTFTL-ENMVKIMGWYDNEWGYSNRLVDMAQFM 329
L + VK++ WYDNE+GYS R++D+ + M
Sbjct: 291 FDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHM 327
>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC4|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
Length = 330
Score = 219 bits (558), Expect = 3e-58
Identities = 132/332 (39%), Positives = 191/332 (56%), Gaps = 16/332 (4%)
Query: 1 MKIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDPANWEILAYLLEHDSVHGLLPKEV 60
+K+ INGFGRIGR V RA +R+D +E++ IND + + AY L++DS HG V
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSD----IEIVAINDLLDADYXAYXLKYDSTHGRFDGTV 57
Query: 61 RYSNYKLIIGSLEIPVF------NSIKDLKGVDVIIECSGKFLEPKTLENYLLLGAKKVL 114
+ LI+ +I V N D GVDV+ E +G FL +T ++ GAKKV+
Sbjct: 58 EVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVV 117
Query: 115 LSAPFMGEYDEKQYPTLVYGVNHFCYQNQAIVSNASCTTNAIAPICAILDKAFKIKEGML 174
+ P + P V G N Y Q IVSNASCTTN +AP+ +++ F I EG+
Sbjct: 118 XTGP-----SKDNTPXFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLX 172
Query: 175 TTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRV 234
TT+H+ T+ QK +D D R R A+ NIIP++T AA A+ KVLP L K+ G + RV
Sbjct: 173 TTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGXAFRV 232
Query: 235 PSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHSVII 294
P+ +VS++DL++ LEK A + I + A++G KGVL + VS+DF + +
Sbjct: 233 PTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEXKGVLGYTEDDVVSTDFNGEVCTSVF 292
Query: 295 APDLTFTL-ENMVKIMGWYDNEWGYSNRLVDM 325
L +N VK++ WYDNE GYSN+++D+
Sbjct: 293 DAKAGIALNDNFVKLVSWYDNETGYSNKVLDL 324
>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|B Chain B, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|C Chain C, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|D Chain D, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHY|A Chain A, Gapdh Complexed With Adp-Ribose
pdb|1IHY|B Chain B, Gapdh Complexed With Adp-Ribose
pdb|1IHY|C Chain C, Gapdh Complexed With Adp-Ribose
pdb|1IHY|D Chain D, Gapdh Complexed With Adp-Ribose
Length = 333
Score = 219 bits (558), Expect = 3e-58
Identities = 133/337 (39%), Positives = 194/337 (57%), Gaps = 20/337 (5%)
Query: 2 KIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDP-ANWEILAYLLEHDSVHGLLPKEV 60
KI INGFGRIGR VLR LE +V+ +NDP E + Y+ ++DS HG+ EV
Sbjct: 2 KIGINGFGRIGRLVLRTALEMG-----AQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEV 56
Query: 61 RYSNYKLIIGSLEIPVFNSIK------DLKGVDVIIECSGKFLEPKTLENYLLLGAKKVL 114
+ + L++ +I VFN +K G + I+E +G F + + GAKKV+
Sbjct: 57 KVEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVI 116
Query: 115 LSAPFMGEYDEKQYPTLVYGVNHFCY-QNQAIVSNASCTTNAIAPICAILDKAFKIKEGM 173
+SAP P V GVN Y ++ +VSNASCTTN +AP+ +L + F+I EG+
Sbjct: 117 ISAP------SADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGL 170
Query: 174 LTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVR 233
+TT+H+ T+ QK +D D R R AA NIIP++T AA A+ KV+P L K+ G + R
Sbjct: 171 MTTVHAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFR 230
Query: 234 VPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHSVI 293
VP+ +VS++DL++ L K+ D I + AS+G L+GVL + VS DF + S I
Sbjct: 231 VPTPNVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGVLGYTEDDVVSCDFTGDNRSSI 290
Query: 294 IAPDLTFTL-ENMVKIMGWYDNEWGYSNRLVDMAQFM 329
L + VK++ WYDNE+GYS R++D+ + M
Sbjct: 291 FDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHM 327
>pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal Muscle D-
Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle D-
Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 334
Score = 217 bits (552), Expect = 2e-57
Identities = 131/338 (38%), Positives = 193/338 (56%), Gaps = 19/338 (5%)
Query: 1 MKIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDP-ANWEILAYLLEHDSVHGLLPKE 59
+K+ ++GFGRIGR V RA K++++ INDP + + Y+ ++DS HG
Sbjct: 3 VKVGVDGFGRIGRLVTRAAFNSG----KVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGT 58
Query: 60 VRYSNYKLIIGSLEIPVFNSI--KDLK----GVDVIIECSGKFLEPKTLENYLLLGAKKV 113
V+ + KL+I I +F +++K G ++E +G F + +L GAK++
Sbjct: 59 VKAEDGKLVIDGKAITIFQERDPENIKWGDAGTAYVVESTGVFTTMEKAGAHLKGGAKRI 118
Query: 114 LLSAPFMGEYDEKQYPTLVYGVNHFCYQNQA-IVSNASCTTNAIAPICAILDKAFKIKEG 172
++SAP P V GVNHF Y N I+SNASCTTN +AP+ ++ F I EG
Sbjct: 119 VISAP------SADAPMFVMGVNHFKYANSLKIISNASCTTNCLAPLAKVIHDHFGIVEG 172
Query: 173 MLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSV 232
++TT+H+ T+ QK +D R R AA N+IP +T AA A+ KV+P L K+ G +
Sbjct: 173 LMTTVHAITATQKTVDSPSGKLWRGGRGAAQNLIPASTGAAKAVGKVIPELDGKLTGMAF 232
Query: 233 RVPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHSV 292
RVP+ +VS++DL+ LEK A D I ++ EAS+G LKG+L E VS DF + HS
Sbjct: 233 RVPTANVSVLDLTCRLEKPAKYDDIKKVVKEASEGPLKGILGYTEDEVVSDDFNGSNHSS 292
Query: 293 IIAPDLTFTL-ENMVKIMGWYDNEWGYSNRLVDMAQFM 329
I L + VK++ WYDNE+GYS R+VD+ M
Sbjct: 293 IFDAGAGIELNDTFVKLVSWYDNEFGYSERVVDLMAHM 330
>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3-Phosphate Dehydrogenase From
Palinurus Versicolor
pdb|1DSS|R Chain R, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3-Phosphate Dehydrogenase From
Palinurus Versicolor
Length = 333
Score = 216 bits (550), Expect = 3e-57
Identities = 133/337 (39%), Positives = 194/337 (57%), Gaps = 20/337 (5%)
Query: 2 KIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDP-ANWEILAYLLEHDSVHGLLPKEV 60
KI INGFGRIGR VLRA LE +V+ +NDP E + Y+ ++DS HG+ EV
Sbjct: 2 KIGINGFGRIGRLVLRAALEMG-----AQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEV 56
Query: 61 RYSNYKLIIGSLEIPVFNSIK------DLKGVDVIIECSGKFLEPKTLENYLLLGAKKVL 114
+ + L++ +I VFN +K G + I+E +G F + + GAKKV+
Sbjct: 57 KAEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVI 116
Query: 115 LSAPFMGEYDEKQYPTLVYGVNHFCY-QNQAIVSNASCTTNAIAPICAILDKAFKIKEGM 173
+SAP P V GVN Y ++ +VSNAS TTN +AP+ +L + F+I EG+
Sbjct: 117 ISAP------SADAPMFVCGVNLEKYSKDMKVVSNASXTTNCLAPVAKVLHENFEIVEGL 170
Query: 174 LTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVR 233
+TT+H+ T+ QK +D D R R AA NIIP++T AA A+ KV+P L K+ G + R
Sbjct: 171 MTTVHAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFR 230
Query: 234 VPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHSVI 293
VP+ +VS++DL++ L K+ D I + AS+G L+GVL + VS DF + S I
Sbjct: 231 VPTPNVSVVDLTVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSI 290
Query: 294 IAPDLTFTL-ENMVKIMGWYDNEWGYSNRLVDMAQFM 329
L + VK++ WYDNE+GYS R++D+ + M
Sbjct: 291 FDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHM 327
>pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 214 bits (545), Expect = 1e-56
Identities = 138/355 (38%), Positives = 204/355 (56%), Gaps = 33/355 (9%)
Query: 1 MKIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDPA-NWEILAYLLEHDSVHGLLPKE 59
+K+ INGFGRIGR V +AI ++ +++V+ + D + N E AY ++HD+VHG
Sbjct: 3 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKYT 62
Query: 60 VRYSNYKLIIGSLEIPVFNS--IKDLK-------------GVDVIIECSGKFLEPKTLEN 104
V + + ++ V N IK +K GVD +IE +G F + E
Sbjct: 63 VEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEG 122
Query: 105 YLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFCYQ--NQAIVSNASCTTNAIAPICAI 162
++ GAKKV++SAP G T+V GVN Y + +VSNASCTTN +API +
Sbjct: 123 HIKGGAKKVVISAPASGGAK-----TIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHV 177
Query: 163 LDKA-FKIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLP 221
L K F I+ G++TTIHSYT+ QK +D D R RAAA NIIP+TT AA A+ V+P
Sbjct: 178 LTKENFGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIP 237
Query: 222 NLKNKMHGHSVRVPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERV 281
+ K K+ G S RVP+ DVS++DL+ + I+ + +A++ +KG+L +E V
Sbjct: 238 STKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKGILGFTDEELV 297
Query: 282 SSDFISNPHSVIIAPDLTFTLEN-------MVKIMGWYDNEWGYSNRLVDMAQFM 329
S+DFI++ S + D TL+N K++ WYDNEW YS+R+VD+ ++M
Sbjct: 298 SADFINDNRSSVY--DSKATLQNNLPGEKRFFKVVSWYDNEWAYSHRVVDLVRYM 350
>pdb|1GYP|A Chain A, Mol_id: 1; Molecule: Glyceraldehyde-3-Phosphate
Dehydrogenase; Chain: A, B, C, D; Synonym: Gapdh; Ec:
1.2.1.12; Engineered: Yes; Heterogen: Nad; Heterogen:
Phosphate
pdb|1GYP|B Chain B, Mol_id: 1; Molecule: Glyceraldehyde-3-Phosphate
Dehydrogenase; Chain: A, B, C, D; Synonym: Gapdh; Ec:
1.2.1.12; Engineered: Yes; Heterogen: Nad; Heterogen:
Phosphate
pdb|1GYP|C Chain C, Mol_id: 1; Molecule: Glyceraldehyde-3-Phosphate
Dehydrogenase; Chain: A, B, C, D; Synonym: Gapdh; Ec:
1.2.1.12; Engineered: Yes; Heterogen: Nad; Heterogen:
Phosphate
pdb|1GYP|D Chain D, Mol_id: 1; Molecule: Glyceraldehyde-3-Phosphate
Dehydrogenase; Chain: A, B, C, D; Synonym: Gapdh; Ec:
1.2.1.12; Engineered: Yes; Heterogen: Nad; Heterogen:
Phosphate
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 214 bits (545), Expect = 1e-56
Identities = 138/355 (38%), Positives = 204/355 (56%), Gaps = 33/355 (9%)
Query: 1 MKIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDPA-NWEILAYLLEHDSVHGLLPKE 59
+K+ INGFGRIGR V +AI ++ +++V+ + D + N E AY ++HD+VHG
Sbjct: 3 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKYT 62
Query: 60 VRYSNYKLIIGSLEIPVFNS--IKDLK-------------GVDVIIECSGKFLEPKTLEN 104
V + + ++ V N IK +K GVD +IE +G F + E
Sbjct: 63 VEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEG 122
Query: 105 YLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFCYQ--NQAIVSNASCTTNAIAPICAI 162
++ GAKKV++SAP G T+V GVN Y + +VSNASCTTN +API +
Sbjct: 123 HIKGGAKKVVISAPASGGAK-----TIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHV 177
Query: 163 LDKA-FKIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLP 221
L K F I+ G++TTIHSYT+ QK +D D R RAAA NIIP+TT AA A+ V+P
Sbjct: 178 LTKENFGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIP 237
Query: 222 NLKNKMHGHSVRVPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERV 281
+ K K+ G S RVP+ DVS++DL+ + I+ + +A++ +KG+L +E V
Sbjct: 238 STKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKGILGFTDEELV 297
Query: 282 SSDFISNPHSVIIAPDLTFTLEN-------MVKIMGWYDNEWGYSNRLVDMAQFM 329
S+DFI++ S + D TL+N K++ WYDNEW YS+R+VD+ ++M
Sbjct: 298 SADFINDNRSSVY--DSKATLQNNLPGEKRFFKVVSWYDNEWAYSHRVVDLVRYM 350
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
Length = 359
Score = 213 bits (541), Expect = 3e-56
Identities = 140/355 (39%), Positives = 197/355 (55%), Gaps = 33/355 (9%)
Query: 1 MKIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDP-ANWEILAYLLEHDSVHGLLPKE 59
+K+ INGFGRIGR V +A+ E +++V+ + D + E AY + +D+VHG E
Sbjct: 3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 60 VRYSNYKLIIGSLEIPVFNSIKDL---------------KGVDVIIECSGKFLEPKTLEN 104
V + + + V N + L GV+ +IE +G F E
Sbjct: 63 VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 105 YLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFCYQ--NQAIVSNASCTTNAIAPICAI 162
+L GA+KV++SAP G TLV GVNH Y +VSNASCTTN +API +
Sbjct: 123 HLRGGARKVVISAPASGGAK-----TLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHV 177
Query: 163 LDK-AFKIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLP 221
L K F ++ G++TTIHSYT+ QK +D D R RAAA NIIP+TT AA A+ V+P
Sbjct: 178 LVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIP 237
Query: 222 NLKNKMHGHSVRVPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERV 281
+ + K+ G S RVP+ DVS++DL+ + I+ L ASK +KG+L +E V
Sbjct: 238 STQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELV 297
Query: 282 SSDFISNPHSVIIAPDLTFTLEN-------MVKIMGWYDNEWGYSNRLVDMAQFM 329
S+DFI++ S I D TL+N KI+ WYDNEWGYS+R+VD+ + M
Sbjct: 298 SADFINDNRSSIY--DSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHM 350
>pdb|1GGA|A Chain A, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
pdb|1GGA|B Chain B, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
pdb|1GGA|O Chain O, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
pdb|1GGA|P Chain P, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
pdb|1GGA|Q Chain Q, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
pdb|1GGA|R Chain R, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
Length = 358
Score = 209 bits (533), Expect = 3e-55
Identities = 137/355 (38%), Positives = 196/355 (54%), Gaps = 33/355 (9%)
Query: 1 MKIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDP-ANWEILAYLLEHDSVHGLLPKE 59
+K+ INGFGRIGR V +A+ + +++V+ + D + AY +++DSVHG
Sbjct: 2 IKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHS 61
Query: 60 VRYSNYKLIIGSLEIPVFNSIKDL---------------KGVDVIIECSGKFLEPKTLEN 104
V + K + + V N + L GV+ +IE +G F E
Sbjct: 62 VSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEG 121
Query: 105 YLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFCY--QNQAIVSNASCTTNAIAPICAI 162
+L GA+KV++SAP G T V GVNH Y + Q +VSNASCTTN +AP+ +
Sbjct: 122 HLRGGARKVVISAPASGGAK-----TFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHV 176
Query: 163 LDK-AFKIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLP 221
L K F I G++TT+HSYT+ QK +D D R RAAA NIIP+TT AA A+ V+P
Sbjct: 177 LVKEGFGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIP 236
Query: 222 NLKNKMHGHSVRVPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERV 281
+ + K+ G + RVP+ DVS++DL+ + I+ L ASK +K +L +E V
Sbjct: 237 STQGKLTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELV 296
Query: 282 SSDFISNPHSVIIAPDLTFTLEN-------MVKIMGWYDNEWGYSNRLVDMAQFM 329
S+DFIS+ S I D TL+N KI+ WYDNEWGYS+R+VD+ + M
Sbjct: 297 SADFISDSRSSIY--DSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHM 349
>pdb|1CF2|O Chain O, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|P Chain P, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|Q Chain Q, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|R Chain R, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
Length = 337
Score = 36.2 bits (82), Expect = 0.005
Identities = 28/113 (24%), Positives = 58/113 (50%), Gaps = 12/113 (10%)
Query: 3 IFINGFGRIGRCVLRAILERNDTNPKLEVIGINDP-ANWEILAYLLEHDSVHGLLPKEVR 61
+ ING+G +G+ V AI +++D ++VIG++ ++E L + ++ +P+ V+
Sbjct: 4 VAINGYGTVGKRVADAIAQQDD----MKVIGVSKTRPDFEARMALKKGYDLYVAIPERVK 59
Query: 62 YSNYKLIIGSLEIPVFNSIKD-LKGVDVIIECSGKFLEPKTLENYLLLGAKKV 113
+ I V ++ D L D++I+C+ + + K L+ Y G K +
Sbjct: 60 ------LFEKAGIEVAGTVDDMLDEADIVIDCTPEGIGAKNLKMYKEKGIKAI 106
>pdb|1B7G|O Chain O, Glyceraldehyde 3-Phosphate Dehydrogenase
pdb|1B7G|Q Chain Q, Glyceraldehyde 3-Phosphate Dehydrogenase
Length = 340
Score = 35.0 bits (79), Expect = 0.012
Identities = 43/191 (22%), Positives = 87/191 (45%), Gaps = 26/191 (13%)
Query: 1 MKIFINGFGRIGRCVLRAILERNDTNPKLEVIGI-NDPANWEILAYLLEHDSVHGLLPKE 59
+ + +NG+G IG+ V AI+++ P ++++G+ N+E A++ + +P++
Sbjct: 2 VNVAVNGYGTIGKRVADAIIKQ----PDMKLVGVAKTSPNYE--AFIAHRRGIRIYVPQQ 55
Query: 60 VRYSNYKLIIGSLEIPVFNSIKDL-KGVDVIIECSGKFLEPKTLENYLLLGAKKVLLSAP 118
+ K S IPV +++DL K D++++ + + + YL L + +
Sbjct: 56 ----SIKKFEES-GIPVAGTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQL-QRNAIFQGG 109
Query: 119 FMGEYDEKQYPTLVYGVNHFCYQNQAI----VSNASCTTNAIAPICAILDKAFKIKEGML 174
E + + L C N+A+ + SC T A+ ++K K+ E +
Sbjct: 110 EKAEVADISFSAL-------CNYNEALGKKYIRVVSCNTTALLRTICTVNKVSKV-EKVR 161
Query: 175 TTIHSYTSDQK 185
TI +DQK
Sbjct: 162 ATIVRRAADQK 172
>pdb|1GNL|A Chain A, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
X-Ray Structure At 1.25a Resolution Using Synchrotron
Radiation At A Wavelength Of 0.933a
pdb|1GNL|B Chain B, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
X-Ray Structure At 1.25a Resolution Using Synchrotron
Radiation At A Wavelength Of 0.933a
Length = 544
Score = 28.1 bits (61), Expect = 1.5
Identities = 21/79 (26%), Positives = 31/79 (38%), Gaps = 10/79 (12%)
Query: 138 FCYQNQAIVSNASCTTNAIA----PICAILDKAFKIKEGMLTTIHSYTSDQKLIDLAHPL 193
FCYQ Q V N CT + A+ D + +G+ ++ K +D H +
Sbjct: 5 FCYQCQETVGNKGCTQVGVCGKKPETAALQDALIYVTKGLGQIATRLRAEGKAVD--HRI 62
Query: 194 DKRRSRAAASNIIPTTTKA 212
D R N+ T T A
Sbjct: 63 D----RLVTGNLFATITNA 77
>pdb|1GN9|A Chain A, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
Atcc 27774 X-Ray Structure At 2.6a Resolution Using
Synchrotron Radiation At A Wavelength Of 1.722a
pdb|1GN9|B Chain B, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
Atcc 27774 X-Ray Structure At 2.6a Resolution Using
Synchrotron Radiation At A Wavelength Of 1.722a
Length = 544
Score = 28.1 bits (61), Expect = 1.5
Identities = 21/79 (26%), Positives = 31/79 (38%), Gaps = 10/79 (12%)
Query: 138 FCYQNQAIVSNASCTTNAIA----PICAILDKAFKIKEGMLTTIHSYTSDQKLIDLAHPL 193
FCYQ Q V N CT + A+ D + +G+ ++ K +D H +
Sbjct: 5 FCYQCQETVGNKGCTQVGVCGKKPETAALQDALIYVTKGLGQIATRLRAEGKAVD--HRI 62
Query: 194 DKRRSRAAASNIIPTTTKA 212
D R N+ T T A
Sbjct: 63 D----RLVTGNLFATITNA 77
>pdb|2CST|A Chain A, Aspartate Aminotransferase (Caspat) (E.C.2.6.1.1)
Complexed With Pyridoxal-5'-Phosphate And Maleate
pdb|2CST|B Chain B, Aspartate Aminotransferase (Caspat) (E.C.2.6.1.1)
Complexed With Pyridoxal-5'-Phosphate And Maleate
Length = 411
Score = 26.9 bits (58), Expect = 3.2
Identities = 15/46 (32%), Positives = 23/46 (49%), Gaps = 2/46 (4%)
Query: 17 RAILERNDTNPKLEVIGINDPANWEILAYLLEHDSVHGLLPKEVRY 62
R +L R++ +LE +G P W + + S GL PK+V Y
Sbjct: 328 RVLLMRSELRSRLESLGT--PGTWNHITDQIGMFSFTGLNPKQVEY 371
>pdb|1AAT| Cytosolic Aspartate Aminotransferase (E.C.2.6.1.1) Complex With
2-Oxo-Glutaric Acid
Length = 411
Score = 26.9 bits (58), Expect = 3.2
Identities = 15/46 (32%), Positives = 23/46 (49%), Gaps = 2/46 (4%)
Query: 17 RAILERNDTNPKLEVIGINDPANWEILAYLLEHDSVHGLLPKEVRY 62
R +L R++ +LE +G P W + + S GL PK+V Y
Sbjct: 328 RVLLMRSELRSRLESLGT--PGTWNHITDQIGMFSFTGLNPKQVEY 371
>pdb|1B3Q|B Chain B, Crystal Structure Of Chea-289, A Signal Transducing
Histidine Kinase
pdb|1B3Q|A Chain A, Crystal Structure Of Chea-289, A Signal Transducing
Histidine Kinase
Length = 379
Score = 26.6 bits (57), Expect = 4.2
Identities = 23/81 (28%), Positives = 40/81 (48%), Gaps = 8/81 (9%)
Query: 41 EILAYLLEHDSVHGLLPKEVRYSNYKLIIGSLEIPVFNSIKDLKGVDVIIECSGKFLEP- 99
E L +LL + HG+ PKE R + K IG+L + ++ + V + +E G+ ++
Sbjct: 109 EPLLHLLRNAIDHGIEPKEERIAKGKPPIGTL---ILSARHEGNNVVIEVEDDGRGIDKE 165
Query: 100 ----KTLENYLLLGAKKVLLS 116
K +E L+ +K LS
Sbjct: 166 KIIRKAIEKGLIDESKAATLS 186
>pdb|1I5D|A Chain A, Structure Of Chea Domain P4 In Complex With Tnp-Atp
Length = 191
Score = 26.6 bits (57), Expect = 4.2
Identities = 23/81 (28%), Positives = 40/81 (48%), Gaps = 8/81 (9%)
Query: 41 EILAYLLEHDSVHGLLPKEVRYSNYKLIIGSLEIPVFNSIKDLKGVDVIIECSGKFLEP- 99
E L +LL + HG+ PKE R + K IG+L + ++ + V + +E G+ ++
Sbjct: 52 EPLLHLLRNAIDHGIEPKEERIAKGKPPIGTL---ILSARHEGNNVVIEVEDDGRGIDKE 108
Query: 100 ----KTLENYLLLGAKKVLLS 116
K +E L+ +K LS
Sbjct: 109 KIIRKAIEKGLIDESKAATLS 129
>pdb|1I58|A Chain A, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Atp Analog Adpcp And Magnesium
pdb|1I59|B Chain B, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Adpnp And Magensium
pdb|1I5A|A Chain A, Structure Of Chea Domain P4 In Complex With Adpcp And
Manganese
pdb|1I5B|A Chain A, Structure Of Chea Domain P4 In Complex With Adpnp And
Manganese
pdb|1I5B|B Chain B, Structure Of Chea Domain P4 In Complex With Adpnp And
Manganese
pdb|1I5C|B Chain B, Structure Of Chea Domain P4 In Complex With Adp
pdb|1I5C|A Chain A, Structure Of Chea Domain P4 In Complex With Adp
pdb|1I5A|B Chain B, Structure Of Chea Domain P4 In Complex With Adpcp And
Manganese
pdb|1I59|A Chain A, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Adpnp And Magensium
pdb|1I58|B Chain B, Structure Of The Histidine Kinase Chea Atp-Binding Domain
In Complex With Atp Analog Adpcp And Magnesium
Length = 189
Score = 26.6 bits (57), Expect = 4.2
Identities = 23/81 (28%), Positives = 40/81 (48%), Gaps = 8/81 (9%)
Query: 41 EILAYLLEHDSVHGLLPKEVRYSNYKLIIGSLEIPVFNSIKDLKGVDVIIECSGKFLEP- 99
E L +LL + HG+ PKE R + K IG+L + ++ + V + +E G+ ++
Sbjct: 50 EPLLHLLRNAIDHGIEPKEERIAKGKPPIGTL---ILSARHEGNNVVIEVEDDGRGIDKE 106
Query: 100 ----KTLENYLLLGAKKVLLS 116
K +E L+ +K LS
Sbjct: 107 KIIRKAIEKGLIDESKAATLS 127
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.138 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,901,647
Number of Sequences: 13198
Number of extensions: 76588
Number of successful extensions: 321
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 28
length of query: 332
length of database: 2,899,336
effective HSP length: 89
effective length of query: 243
effective length of database: 1,724,714
effective search space: 419105502
effective search space used: 419105502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)