BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|15645540|ref|NP_207716.1| 4-oxalocrotonate tautomerase (dmpI) [Helicobacter pylori 26695] (68 letters) Database: /var/www/html/HP/blast_new/blast/db/pdbaa 13,198 sequences; 2,899,336 total letters Searching...........................done



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1OTF|A  Chain A, 4-Oxalocrotonate Tautomerase - Triclini...    41  2e-05
pdb|1BJP|A  Chain A, Crystal Structure Of 4-Oxalocrotonate T...    38  2e-04
pdb|1PSD|A  Chain A, D-3-Phosphoglycerate Dehydrogenase (Pho...    25  1.6
pdb|1MF8|B  Chain B, Crystal Structure Of Human Calcineurin ...    24  3.6
pdb|1M63|B  Chain B, Crystal Structure Of Calcineurin-Cyclop...    24  3.6
pdb|1BNC|A  Chain A, Mol_id: 1; Molecule: Biotin Carboxylase...    23  8.1
pdb|1DV2|A  Chain A, The Structure Of Biotin Carboxylase, Mu...    23  8.1

>pdb|1OTF|A Chain A, 4-Oxalocrotonate Tautomerase - Triclinic Crystal Form
 pdb|1OTF|B Chain B, 4-Oxalocrotonate Tautomerase - Triclinic Crystal Form
 pdb|1OTF|C Chain C, 4-Oxalocrotonate Tautomerase - Triclinic Crystal Form
 pdb|1OTF|D Chain D, 4-Oxalocrotonate Tautomerase - Triclinic Crystal Form
 pdb|1OTF|E Chain E, 4-Oxalocrotonate Tautomerase - Triclinic Crystal Form
 pdb|1OTF|F Chain F, 4-Oxalocrotonate Tautomerase - Triclinic Crystal Form
          Length = 62

 Score = 41.2 bits (95), Expect = 2e-05
 Identities = 20/53 (37%), Positives = 32/53 (59%)

Query: 14 GPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGESVHHLRQ 66
          G T+EQK+ LI  VS+ M   L+     + V+I E+  N++G+GGE    +R+
Sbjct: 10 GRTDEQKETLIRQVSEAMANSLDAPLERVRVLITEMPKNHFGIGGEPASKVRR 62

>pdb|1BJP|A Chain A, Crystal Structure Of 4-Oxalocrotonate Tautomerase
          Inactivated By 2-Oxo-3-Pentynoate At 2.4 Angstroms
          Resolution
 pdb|1BJP|B Chain B, Crystal Structure Of 4-Oxalocrotonate Tautomerase
          Inactivated By 2-Oxo-3-Pentynoate At 2.4 Angstroms
          Resolution
 pdb|1BJP|E Chain E, Crystal Structure Of 4-Oxalocrotonate Tautomerase
          Inactivated By 2-Oxo-3-Pentynoate At 2.4 Angstroms
          Resolution
 pdb|4OTA|M Chain M, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Orthorhombic Crystal Form
 pdb|4OTA|P Chain P, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Orthorhombic Crystal Form
 pdb|4OTA|Q Chain Q, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Orthorhombic Crystal Form
 pdb|4OTC|A Chain A, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Trigonal Crystal Form
 pdb|4OTC|B Chain B, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Trigonal Crystal Form
 pdb|4OTC|C Chain C, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Trigonal Crystal Form
 pdb|4OTC|D Chain D, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Trigonal Crystal Form
 pdb|4OTC|E Chain E, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Trigonal Crystal Form
 pdb|4OTC|F Chain F, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Trigonal Crystal Form
 pdb|4OTC|G Chain G, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Trigonal Crystal Form
 pdb|4OTC|H Chain H, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Trigonal Crystal Form
 pdb|4OTC|I Chain I, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Trigonal Crystal Form
 pdb|1BJP|D Chain D, Crystal Structure Of 4-Oxalocrotonate Tautomerase
          Inactivated By 2-Oxo-3-Pentynoate At 2.4 Angstroms
          Resolution
 pdb|4OTA|A Chain A, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Orthorhombic Crystal Form
 pdb|4OTA|B Chain B, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Orthorhombic Crystal Form
 pdb|4OTA|C Chain C, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Orthorhombic Crystal Form
 pdb|4OTA|D Chain D, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Orthorhombic Crystal Form
 pdb|4OTA|E Chain E, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Orthorhombic Crystal Form
 pdb|4OTA|F Chain F, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Orthorhombic Crystal Form
 pdb|4OTA|G Chain G, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Orthorhombic Crystal Form
 pdb|4OTA|H Chain H, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Orthorhombic Crystal Form
 pdb|4OTA|J Chain J, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Orthorhombic Crystal Form
 pdb|4OTA|K Chain K, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Orthorhombic Crystal Form
 pdb|4OTA|L Chain L, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Orthorhombic Crystal Form
 pdb|4OTA|O Chain O, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Orthorhombic Crystal Form
 pdb|4OTB|A Chain A, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Rhombohedral Crystal Form
 pdb|4OTB|B Chain B, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Rhombohedral Crystal Form
 pdb|4OTB|C Chain C, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Rhombohedral Crystal Form
 pdb|4OTB|D Chain D, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Rhombohedral Crystal Form
 pdb|4OTB|E Chain E, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Rhombohedral Crystal Form
 pdb|4OTB|F Chain F, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Rhombohedral Crystal Form
 pdb|4OTB|G Chain G, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Rhombohedral Crystal Form
 pdb|4OTB|H Chain H, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Rhombohedral Crystal Form
 pdb|4OTB|I Chain I, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Rhombohedral Crystal Form
 pdb|4OTB|J Chain J, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Rhombohedral Crystal Form
 pdb|4OTB|K Chain K, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Rhombohedral Crystal Form
 pdb|4OTA|I Chain I, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Orthorhombic Crystal Form
 pdb|4OTA|N Chain N, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Orthorhombic Crystal Form
 pdb|1BJP|C Chain C, Crystal Structure Of 4-Oxalocrotonate Tautomerase
          Inactivated By 2-Oxo-3-Pentynoate At 2.4 Angstroms
          Resolution
 pdb|4OTB|L Chain L, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Rhombohedral Crystal Form
 pdb|4OTA|R Chain R, 4-Oxalocrotonate Tautomerase Observed As An Octodecamer,
          Orthorhombic Crystal Form
          Length = 62

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 19/53 (35%), Positives = 33/53 (61%)

Query: 14 GPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGESVHHLRQ 66
          G ++EQK+ LI  VS+ + + L+    S+ VII E+   ++G+GGE    +R+
Sbjct: 10 GRSDEQKETLIREVSEAISRSLDAPLTSVRVIITEMAKGHFGIGGELASKVRR 62

>pdb|1PSD|A Chain A, D-3-Phosphoglycerate Dehydrogenase (Phosphoglycerate
           Dehydrogenase) (E.C.1.1.1.95)
 pdb|1PSD|B Chain B, D-3-Phosphoglycerate Dehydrogenase (Phosphoglycerate
           Dehydrogenase) (E.C.1.1.1.95)
          Length = 409

 Score = 25.0 bits (53), Expect = 1.6
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 3   FINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGESVH 62
           F N+ L P  GG T E ++ +   V+  ++K  +       V   EV    +  GG  + 
Sbjct: 283 FDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPLH--GGRRLM 340

Query: 63  HLRQ 66
           H+ +
Sbjct: 341 HIHE 344

>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
           Cyclosporin A And Human Cyclophilin
          Length = 170

 Score = 23.9 bits (50), Expect = 3.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 21  QQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGE 59
           ++ IEGVS   VK   + K      I ++D + Y   GE
Sbjct: 73  KEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGE 111

>pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
           Shows Common But Distinct Recognition Of
           Immunophilin-Drug Complexes
 pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
           Shows Common But Distinct Recognition Of
           Immunophilin-Drug Complexes
 pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
           B, Fkbp12 And The Immunosuppressant Drug Fk506
           (Tacrolimus)
 pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
          Length = 169

 Score = 23.9 bits (50), Expect = 3.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 21  QQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGE 59
           ++ IEGVS   VK   + K      I ++D + Y   GE
Sbjct: 72  KEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGE 110

>pdb|1BNC|A Chain A, Mol_id: 1; Molecule: Biotin Carboxylase; Chain: A, B; Ec:
           6.3.4.14
 pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
 pdb|1BNC|B Chain B, Mol_id: 1; Molecule: Biotin Carboxylase; Chain: A, B; Ec:
           6.3.4.14
 pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
          Length = 449

 Score = 22.7 bits (47), Expect = 8.1
 Identities = 12/54 (22%), Positives = 26/54 (47%), Gaps = 17/54 (31%)

Query: 17  NEQKQQLIEGVS---DLMVKVLNKNKASIVVIIDEVDSNNYGLGGESVHHLRQK 67
           N  ++ +I+G+    DL ++++N                N+  GG ++H+L +K
Sbjct: 404 NALQELIIDGIKTNVDLQIRIMN--------------DENFQHGGTNIHYLEKK 443

>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k,
           Complexed With Atp
 pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k,
           Complexed With Atp
          Length = 452

 Score = 22.7 bits (47), Expect = 8.1
 Identities = 12/54 (22%), Positives = 26/54 (47%), Gaps = 17/54 (31%)

Query: 17  NEQKQQLIEGVS---DLMVKVLNKNKASIVVIIDEVDSNNYGLGGESVHHLRQK 67
           N  ++ +I+G+    DL ++++N                N+  GG ++H+L +K
Sbjct: 407 NALQELIIDGIKTNVDLQIRIMN--------------DENFQHGGTNIHYLEKK 446

  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.312    0.135    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 405,857
Number of Sequences: 13198
Number of extensions: 11678
Number of successful extensions: 36
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 7
length of query: 68
length of database: 2,899,336
effective HSP length: 44
effective length of query: 24
effective length of database: 2,318,624
effective search space: 55646976
effective search space used: 55646976
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)