BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645542|ref|NP_207718.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(381 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EFU|B Chain B, Elongation Factor Complex Ef-TuEF-Ts Fr... 28 2.3
pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And N... 28 2.3
pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And N... 28 2.3
pdb|1GJW|A Chain A, Thermotoga Maritima Maltosyltransferase... 27 2.9
pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing... 27 2.9
pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif) ... 27 3.8
pdb|1B24|A Chain A, I-Dmoi, Intron-Encoded Endonuclease 27 3.8
>pdb|1EFU|B Chain B, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|D Chain D, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 282
Score = 27.7 bits (60), Expect = 2.3
Identities = 19/62 (30%), Positives = 30/62 (47%), Gaps = 1/62 (1%)
Query: 259 LEGDVMCHYPYGKFFDALELEKEGERFLKKEVAPTGLLDGKKALYAKNLSLE-IEKEFQH 317
LEGDV+ Y +G L K + L K +A + + +++S E +EKE+Q
Sbjct: 137 LEGDVLGSYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQV 196
Query: 318 NL 319
L
Sbjct: 197 QL 198
>pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
Length = 416
Score = 27.7 bits (60), Expect = 2.3
Identities = 22/105 (20%), Positives = 46/105 (42%), Gaps = 3/105 (2%)
Query: 171 GKFNDNHQEGLKILQNQTK-FAHQKLNAFLISSYQSYLFNALLSKRLEISKIISAFSVKE 229
G+++D + Q+ + F+H L S ++ N +L E + V+
Sbjct: 133 GRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEE--INRVLFGEEEEQRQQEGVIVEL 190
Query: 230 NLEFFKQKNLSVDSDTLKTLKNQAHPFKILEGDVMCHYPYGKFFD 274
+ E +Q + S + KT+ ++ PF + + + +GKFF+
Sbjct: 191 SKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFE 235
>pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers Complexes With N-Acetyl-D-
Glucosamine
pdb|1IPJ|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers Complexes With N-Acetyl-D-
Glucosamine
pdb|1IPJ|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers Complexes With N-Acetyl-D-
Glucosamine
Length = 416
Score = 27.7 bits (60), Expect = 2.3
Identities = 22/105 (20%), Positives = 46/105 (42%), Gaps = 3/105 (2%)
Query: 171 GKFNDNHQEGLKILQNQTK-FAHQKLNAFLISSYQSYLFNALLSKRLEISKIISAFSVKE 229
G+++D + Q+ + F+H L S ++ N +L E + V+
Sbjct: 133 GRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEE--INRVLLGEEEEQRQQEGVIVEL 190
Query: 230 NLEFFKQKNLSVDSDTLKTLKNQAHPFKILEGDVMCHYPYGKFFD 274
+ E +Q + S + KT+ ++ PF + + + +GKFF+
Sbjct: 191 SKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFE 235
>pdb|1GJW|A Chain A, Thermotoga Maritima Maltosyltransferase Complex With
Maltose
pdb|1GJU|A Chain A, Maltosyltransferase From Thermotoga Maritima
Length = 637
Score = 27.3 bits (59), Expect = 2.9
Identities = 12/45 (26%), Positives = 20/45 (43%)
Query: 3 LNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVI 47
LNF+ L H +DF N + ++ +Y + G+ VI
Sbjct: 553 LNFIKKLIKVRHEFLDFVLNGKFENLTTKDLVMYSYEKNGQKIVI 597
>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif)
Length = 493
Score = 27.3 bits (59), Expect = 2.9
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 13/110 (11%)
Query: 161 MPNYFGSQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLISSYQSYLFNALLSKRLEISK 220
+P Y + K +EG+K++ N + + +SS + L +++E
Sbjct: 224 LPEYLSNWTMEKVR---REGVKVMPNAI------VQSVGVSSGK-LLIKLKDGRKVETDH 273
Query: 221 IISAFSVKENLEFFKQKNLSVDSDTLKTLKN---QAHPFKILEGDVMCHY 267
I++A ++ N+E K L +DSD N QA + GD C Y
Sbjct: 274 IVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFY 323
>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif)
pdb|1GV4|B Chain B, Murine Apoptosis-Inducing Factor (Aif)
Length = 528
Score = 26.9 bits (58), Expect = 3.8
Identities = 17/57 (29%), Positives = 27/57 (46%), Gaps = 3/57 (5%)
Query: 214 KRLEISKIISAFSVKENLEFFKQKNLSVDSDTLKTLKN---QAHPFKILEGDVMCHY 267
+++E I++A ++ N+E K L +DSD N QA + GD C Y
Sbjct: 304 RKVETDHIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFY 360
>pdb|1B24|A Chain A, I-Dmoi, Intron-Encoded Endonuclease
Length = 188
Score = 26.9 bits (58), Expect = 3.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 297 DGKKALYAKNLSLEIEKEFQHNLLSSHAKTL 327
D + +Y N+SL +F H +LSSH L
Sbjct: 155 DHRHGVYVLNISLRDRIKFVHTILSSHLNPL 185
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.136 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,094,997
Number of Sequences: 13198
Number of extensions: 84390
Number of successful extensions: 247
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 7
length of query: 381
length of database: 2,899,336
effective HSP length: 90
effective length of query: 291
effective length of database: 1,711,516
effective search space: 498051156
effective search space used: 498051156
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)