BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645543|ref|NP_207719.1| heat shock protein (htpX)
[Helicobacter pylori 26695]
(326 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1MFF|A Chain A, Macrophage Migration Inhibitory Factor ... 28 1.9
pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arach... 27 2.4
pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid B... 27 2.4
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthas... 27 2.4
pdb|1MFI|A Chain A, Crystal Structure Of Macrophage Migrati... 27 2.4
pdb|1MIF|A Chain A, Macrophage Migration Inhibitory Factor ... 27 3.2
pdb|1CGQ|A Chain A, Macrophage Migration Inhibitory Factor ... 26 7.1
pdb|1AGJ|A Chain A, Epidermolytic Toxin A From Staphylococc... 26 7.1
pdb|1GD0|A Chain A, Human Macrophage Migration Inhibitory F... 26 7.1
pdb|1P1G|A Chain A, Macrophage Migration Inhibitory Factor ... 26 7.1
pdb|1EQJ|A Chain A, Crystal Structure Of Phosphoglycerate M... 26 7.1
pdb|32C2|B Chain B, Structure Of An Activity Suppressing Fa... 26 7.1
pdb|1CA7|A Chain A, Macrophage Migration Inhibitory Factor ... 26 7.1
pdb|1GIF|A Chain A, Human Glycosylation-Inhibiting Factor >... 26 7.1
>pdb|1MFF|A Chain A, Macrophage Migration Inhibitory Factor Y95f Mutant
pdb|1MFF|B Chain B, Macrophage Migration Inhibitory Factor Y95f Mutant
pdb|1MFF|C Chain C, Macrophage Migration Inhibitory Factor Y95f Mutant
Length = 114
Score = 27.7 bits (60), Expect = 1.9
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 111 KVLSSKENQIHRLLLELLEEANLHFEPKLYIINAPYMNAFASGWNES 157
K+ ++ +LL LL + LH P IN MNA GWN S
Sbjct: 66 KIGGAQNRNYSKLLCGLLSD-RLHISPDRVFINYYDMNAANVGWNGS 111
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
Length = 552
Score = 27.3 bits (59), Expect = 2.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 232 LWVLQIILPFLTLLLQMYLSRTREYMADSGAAFLMH 267
+W + +PFL L+ Y+ +R Y+ DS + +H
Sbjct: 67 VWNIVNNIPFLRSLIMKYVLTSRSYLIDSPPTYNVH 102
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 27.3 bits (59), Expect = 2.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 232 LWVLQIILPFLTLLLQMYLSRTREYMADSGAAFLMH 267
+W + +PFL L+ Y+ +R Y+ DS + +H
Sbjct: 67 VWNIVNNIPFLRSLIMKYVLTSRSYLIDSPPTYNVH 102
>pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non-Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non-Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non-Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non-Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non-Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non-Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non-Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non-Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
Length = 587
Score = 27.3 bits (59), Expect = 2.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 232 LWVLQIILPFLTLLLQMYLSRTREYMADSGAAFLMH 267
+W + +PFL L+ Y+ +R Y+ DS + +H
Sbjct: 67 VWNIVNNIPFLRSLIMKYVLTSRSYLIDSPPTYNVH 102
>pdb|1MFI|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory
Factor Complexed With (E)-2-Fluoro-P-Hydroxycinnamate
pdb|1MFI|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory
Factor Complexed With (E)-2-Fluoro-P-Hydroxycinnamate
pdb|1MFI|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory
Factor Complexed With (E)-2-Fluoro-P-Hydroxycinnamate
Length = 114
Score = 27.3 bits (59), Expect = 2.4
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 111 KVLSSKENQIHRLLLELLEEANLHFEPKLYIINAPYMNAFASGWNES 157
K+ ++ +LL LL + LH P IN MNA GWN S
Sbjct: 66 KIGGAQNRNYSKLLCGLLSD-RLHISPDRVYINYYDMNAANVGWNGS 111
>pdb|1MIF|A Chain A, Macrophage Migration Inhibitory Factor (Mif)
pdb|1MIF|B Chain B, Macrophage Migration Inhibitory Factor (Mif)
pdb|1MIF|C Chain C, Macrophage Migration Inhibitory Factor (Mif)
Length = 115
Score = 26.9 bits (58), Expect = 3.2
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 111 KVLSSKENQIHRLLLELLEEANLHFEPKLYIINAPYMNAFASGWNES 157
K+ ++ +LL LL E L P IN MNA + GWN S
Sbjct: 67 KIGGAQNRSYSKLLCGLLAE-RLRISPDRVYINYYDMNAASVGWNNS 112
>pdb|1CGQ|A Chain A, Macrophage Migration Inhibitory Factor (Mif) With Alanine
Inserted Between Pro-1 And Met-2
pdb|1CGQ|B Chain B, Macrophage Migration Inhibitory Factor (Mif) With Alanine
Inserted Between Pro-1 And Met-2
pdb|1CGQ|C Chain C, Macrophage Migration Inhibitory Factor (Mif) With Alanine
Inserted Between Pro-1 And Met-2
Length = 115
Score = 25.8 bits (55), Expect = 7.1
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 111 KVLSSKENQIHRLLLELLEEANLHFEPKLYIINAPYMNAFASGWNES 157
K+ ++ +LL LL E L P IN MNA GWN S
Sbjct: 67 KIGGAQNRSYSKLLCGLLAE-RLRISPDRVYINYYDMNAANVGWNNS 112
>pdb|1AGJ|A Chain A, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1AGJ|B Chain B, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1EXF|A Chain A, Exfoliative Toxin A
Length = 242
Score = 25.8 bits (55), Expect = 7.1
Identities = 21/73 (28%), Positives = 33/73 (44%), Gaps = 4/73 (5%)
Query: 102 DGYKLIDTSKVLSSKENQIHRLLLELLEEANLHFEPKLYIINAPYMNAFASGWNESNSLI 161
DG KL K NQ+HR +EL L + Y P N+ + +N + L+
Sbjct: 152 DGDKLELIGYPFDHKVNQMHRSEIEL---TTLSRGLRYYGFTVP-GNSGSGIFNSNGELV 207
Query: 162 ALTSALIERLDRD 174
+ S+ + LDR+
Sbjct: 208 GIHSSKVSHLDRE 220
>pdb|1GD0|A Chain A, Human Macrophage Migration Inhibitory Factor (Mif)
pdb|1GD0|C Chain C, Human Macrophage Migration Inhibitory Factor (Mif)
pdb|1GCZ|A Chain A, Macrophage Migration Inhibitory Factor (Mif) Complexed
With Inhibitor.
pdb|1GCZ|C Chain C, Macrophage Migration Inhibitory Factor (Mif) Complexed
With Inhibitor.
pdb|1GD0|B Chain B, Human Macrophage Migration Inhibitory Factor (Mif)
pdb|1GCZ|B Chain B, Macrophage Migration Inhibitory Factor (Mif) Complexed
With Inhibitor
Length = 122
Score = 25.8 bits (55), Expect = 7.1
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 111 KVLSSKENQIHRLLLELLEEANLHFEPKLYIINAPYMNAFASGWNES 157
K+ ++ +LL LL E L P IN MNA GWN S
Sbjct: 66 KIGGAQNRSYSKLLCGLLAE-RLRISPDRVYINYYDMNAANVGWNNS 111
>pdb|1P1G|A Chain A, Macrophage Migration Inhibitory Factor (Mif) With Pro-1
Mutated To Gly-1
pdb|1P1G|B Chain B, Macrophage Migration Inhibitory Factor (Mif) With Pro-1
Mutated To Gly-1
pdb|1P1G|C Chain C, Macrophage Migration Inhibitory Factor (Mif) With Pro-1
Mutated To Gly-1
Length = 114
Score = 25.8 bits (55), Expect = 7.1
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 111 KVLSSKENQIHRLLLELLEEANLHFEPKLYIINAPYMNAFASGWNES 157
K+ ++ +LL LL E L P IN MNA GWN S
Sbjct: 66 KIGGAQNRSYSKLLCGLLAE-RLRISPDRVYINYYDMNAANVGWNNS 111
>pdb|1EQJ|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From Bacillus
Stearothermophilus Complexed With 2-Phosphoglycerate
pdb|1EJJ|A Chain A, Crystal Structural Analysis Of Phosphoglycerate Mutase
Cocrystallized With 3-Phosphoglycerate
Length = 511
Score = 25.8 bits (55), Expect = 7.1
Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Query: 274 RALQKISNDYTNNDYKEIDK 293
RA+Q ISN +TN D++E D+
Sbjct: 264 RAIQ-ISNTFTNEDFREFDR 282
>pdb|32C2|B Chain B, Structure Of An Activity Suppressing Fab Fragment To
Cytochrome P450 Aromatase
Length = 218
Score = 25.8 bits (55), Expect = 7.1
Identities = 14/44 (31%), Positives = 22/44 (49%)
Query: 279 ISNDYTNNDYKEIDKNSTRSAAYLFNAEMFSTHPSIKNRIQSLR 322
IS+DY N ++ N Y+ + S +PS+K+RI R
Sbjct: 29 ISSDYAWNWIRQFPGNKLEWMGYISYSGSTSYNPSLKSRISITR 72
>pdb|1CA7|A Chain A, Macrophage Migration Inhibitory Factor (Mif) With
Hydroxphenylpyruvate
pdb|1CA7|B Chain B, Macrophage Migration Inhibitory Factor (Mif) With
Hydroxphenylpyruvate
pdb|1CA7|C Chain C, Macrophage Migration Inhibitory Factor (Mif) With
Hydroxphenylpyruvate
Length = 114
Score = 25.8 bits (55), Expect = 7.1
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 111 KVLSSKENQIHRLLLELLEEANLHFEPKLYIINAPYMNAFASGWNES 157
K+ ++ +LL LL E L P IN MNA GWN S
Sbjct: 66 KIGGAQNRSYSKLLCGLLAE-RLRISPDRVYINYYDMNAANVGWNNS 111
>pdb|1GIF|A Chain A, Human Glycosylation-Inhibiting Factor
pdb|1GIF|B Chain B, Human Glycosylation-Inhibiting Factor
pdb|1GIF|C Chain C, Human Glycosylation-Inhibiting Factor
Length = 115
Score = 25.8 bits (55), Expect = 7.1
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 111 KVLSSKENQIHRLLLELLEEANLHFEPKLYIINAPYMNAFASGWNES 157
K+ ++ +LL LL E L P IN MNA GWN S
Sbjct: 67 KIGGAQNRSYSKLLCGLLAE-RLRISPDRVYINYYDMNAANVGWNNS 112
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.327 0.138 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,525,744
Number of Sequences: 13198
Number of extensions: 54028
Number of successful extensions: 167
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 14
length of query: 326
length of database: 2,899,336
effective HSP length: 88
effective length of query: 238
effective length of database: 1,737,912
effective search space: 413623056
effective search space used: 413623056
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)