BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645547|ref|NP_207723.1| hypothetical protein
[Helicobacter pylori 26695]
(146 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BWN|A Chain A, Ph Domain And Btk Motif From Bruton's T... 25 2.7
pdb|1BO4|A Chain A, Crystal Structure Of A Gcn5-Related N-A... 25 2.7
pdb|1B55|A Chain A, Ph Domain From Bruton's Tyrosine Kinase... 25 2.7
pdb|1BTK|A Chain A, Ph Domain And Btk Motif From Bruton's T... 25 2.7
>pdb|1BWN|A Chain A, Ph Domain And Btk Motif From Bruton's Tyrosine Kinase
Mutant E41k In Complex With Ins(1,3,4,5)p4
pdb|1BWN|B Chain B, Ph Domain And Btk Motif From Bruton's Tyrosine Kinase
Mutant E41k In Complex With Ins(1,3,4,5)p4
Length = 169
Score = 25.4 bits (54), Expect = 2.7
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 107 QYNYQLIDQVNKPCYFLGGQFY-CSQTLR 134
+YN L+ + + PC+++ GQ+ CSQT +
Sbjct: 132 RYNSDLVQKYH-PCFWIDGQYLCCSQTAK 159
>pdb|1BO4|A Chain A, Crystal Structure Of A Gcn5-Related N-Acetyltransferase:
Serratia Marescens Aminoglycoside 3-N-Acetyltransferase
pdb|1BO4|B Chain B, Crystal Structure Of A Gcn5-Related N-Acetyltransferase:
Serratia Marescens Aminoglycoside 3-N-Acetyltransferase
Length = 168
Score = 25.4 bits (54), Expect = 2.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 53 RSDAMTSYYINVIVYELQKLGFYNVFTQAEFPLDKA 88
R + + IN++ +E LG Y ++ QA++ D A
Sbjct: 118 RRQGIATALINLLKHEANALGAYVIYVQADYGDDPA 153
>pdb|1B55|A Chain A, Ph Domain From Bruton's Tyrosine Kinase In Complex With
Inositol 1,3,4,5-Tetrakisphosphate
pdb|1B55|B Chain B, Ph Domain From Bruton's Tyrosine Kinase In Complex With
Inositol 1,3,4,5-Tetrakisphosphate
Length = 169
Score = 25.4 bits (54), Expect = 2.7
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 107 QYNYQLIDQVNKPCYFLGGQFY-CSQTLR 134
+YN L+ + + PC+++ GQ+ CSQT +
Sbjct: 132 RYNSDLVQKYH-PCFWIDGQYLCCSQTAK 159
>pdb|1BTK|A Chain A, Ph Domain And Btk Motif From Bruton's Tyrosine Kinase
Mutant R28c
pdb|1BTK|B Chain B, Ph Domain And Btk Motif From Bruton's Tyrosine Kinase
Mutant R28c
Length = 169
Score = 25.4 bits (54), Expect = 2.7
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 107 QYNYQLIDQVNKPCYFLGGQFY-CSQTLR 134
+YN L+ + + PC+++ GQ+ CSQT +
Sbjct: 132 RYNSDLVQKYH-PCFWIDGQYLCCSQTAK 159
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.329 0.142 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 795,421
Number of Sequences: 13198
Number of extensions: 30318
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 4
length of query: 146
length of database: 2,899,336
effective HSP length: 80
effective length of query: 66
effective length of database: 1,843,496
effective search space: 121670736
effective search space used: 121670736
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)