BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645548|ref|NP_207724.1| hypothetical protein
[Helicobacter pylori 26695]
(100 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DMU|A Chain A, Crystal Structure Of The Restriction En... 25 1.0
pdb|1DB2|A Chain A, Crystal Structure Of Native Plasminogen... 24 3.0
pdb|1LJ5|A Chain A, 1.8a Resolution Structure Of Latent Pla... 24 3.0
pdb|1DVM|A Chain A, Active Form Of Human Pai-1 >gi|10120510... 24 3.0
pdb|9PAI|A Chain A, Cleaved Substrate Variant Of Plasminoge... 24 3.0
pdb|1B3K|A Chain A, Plasminogen Activator Inhibitor-1 >gi|6... 24 3.0
pdb|1C5G|A Chain A, Plasminogen Activator Inhibitor-1 24 3.0
pdb|1A7C|A Chain A, Human Plasminogen Activator Inhibitor T... 24 3.0
pdb|1CL6|A Chain A, Crystal Structures Of Ferric-No Complex... 23 3.9
pdb|1F24|A Chain A, Crystal Structure Of No Complex Of Thr2... 23 3.9
pdb|1GEJ|A Chain A, Structural Characterization Of N-Butyl-... 23 3.9
pdb|1JFB|A Chain A, X-Ray Structure Of Nitric Oxide Reducta... 23 3.9
pdb|1CMJ|A Chain A, Crystal Structures Of Ferric-No Complex... 23 3.9
pdb|1EHF|A Chain A, Crystal Structures Of Cytochrome P450no... 23 3.9
pdb|1CMN|A Chain A, Crystal Structures Of Ferric-No Complex... 23 3.9
pdb|1F25|A Chain A, Crystal Structure Of No Complex Of Thr2... 23 3.9
pdb|1EHG|A Chain A, Crystal Structures Of Cytochrome P450no... 23 3.9
pdb|1F26|A Chain A, Crystal Structure Of No Complex Of Thr2... 23 3.9
>pdb|1DMU|A Chain A, Crystal Structure Of The Restriction Endonuclease Bgli
(E.C.3.1.21.4) Bound To Its Dna Recognition Sequence
Length = 299
Score = 25.4 bits (54), Expect = 1.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 10 LLSNPTDYYAINGFSEQILM 29
LL++PT Y NGF++ I+M
Sbjct: 120 LLTSPTIYSLTNGFTDSIMM 139
>pdb|1DB2|A Chain A, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
pdb|1DB2|B Chain B, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
Length = 377
Score = 23.9 bits (50), Expect = 3.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 61 GYQMLYRDLIKSTIKRIDFNRPER 84
G+ + L +ST+K++DF+ ER
Sbjct: 106 GFMPHFFRLFRSTVKQVDFSEVER 129
>pdb|1LJ5|A Chain A, 1.8a Resolution Structure Of Latent Plasminogen Activator
Inhibitor-1(Pai-1)
pdb|1DVN|A Chain A, Latent Form Of Plasminogen Activator Inhibitor-1 (Pai-1)
Length = 379
Score = 23.9 bits (50), Expect = 3.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 61 GYQMLYRDLIKSTIKRIDFNRPER 84
G+ + L +ST+K++DF+ ER
Sbjct: 108 GFMPHFFRLFRSTVKQVDFSEVER 131
>pdb|1DVM|A Chain A, Active Form Of Human Pai-1
pdb|1DVM|D Chain D, Active Form Of Human Pai-1
pdb|1DVM|B Chain B, Active Form Of Human Pai-1
pdb|1DVM|C Chain C, Active Form Of Human Pai-1
Length = 379
Score = 23.9 bits (50), Expect = 3.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 61 GYQMLYRDLIKSTIKRIDFNRPER 84
G+ + L +ST+K++DF+ ER
Sbjct: 108 GFMPHFFRLFRSTVKQVDFSEVER 131
>pdb|9PAI|A Chain A, Cleaved Substrate Variant Of Plasminogen Activator
Inhibitor-1
Length = 379
Score = 23.9 bits (50), Expect = 3.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 61 GYQMLYRDLIKSTIKRIDFNRPER 84
G+ + L +ST+K++DF+ ER
Sbjct: 108 GFMPHFFRLFRSTVKQVDFSEVER 131
>pdb|1B3K|A Chain A, Plasminogen Activator Inhibitor-1
pdb|1B3K|C Chain C, Plasminogen Activator Inhibitor-1
pdb|1B3K|B Chain B, Plasminogen Activator Inhibitor-1
pdb|1B3K|D Chain D, Plasminogen Activator Inhibitor-1
Length = 379
Score = 23.9 bits (50), Expect = 3.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 61 GYQMLYRDLIKSTIKRIDFNRPER 84
G+ + L +ST+K++DF+ ER
Sbjct: 108 GFMPHFFRLFRSTVKQVDFSEVER 131
>pdb|1C5G|A Chain A, Plasminogen Activator Inhibitor-1
Length = 402
Score = 23.9 bits (50), Expect = 3.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 61 GYQMLYRDLIKSTIKRIDFNRPER 84
G+ + L +ST+K++DF+ ER
Sbjct: 131 GFMPHFFRLFRSTVKQVDFSEVER 154
>pdb|1A7C|A Chain A, Human Plasminogen Activator Inhibitor Type-1 In Complex
With A Pentapeptide
Length = 379
Score = 23.9 bits (50), Expect = 3.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 61 GYQMLYRDLIKSTIKRIDFNRPER 84
G+ + L +ST+K++DF+ ER
Sbjct: 108 GFMPHFFRLFRSTVKQVDFSEVER 131
>pdb|1CL6|A Chain A, Crystal Structures Of Ferric-No Complexes Of Fungal Nitric
Oxide Reductase And Its Ser286 Mutants At Cryogenic
Temperature
Length = 402
Score = 23.5 bits (49), Expect = 3.9
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 21 NGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDF 79
NG S SA + +LD+ +++++R++ + + C Q+ ++ KS +I F
Sbjct: 175 NGSSTAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAF 233
>pdb|1F24|A Chain A, Crystal Structure Of No Complex Of Thr243ala Mutants Of
Cytochrome P450nor
Length = 402
Score = 23.5 bits (49), Expect = 3.9
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 21 NGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDF 79
NG S SA + +LD+ +++++R++ + + C Q+ ++ KS +I F
Sbjct: 175 NGSSTAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAF 233
>pdb|1GEJ|A Chain A, Structural Characterization Of N-Butyl-Isocyanide
Complexes Of Cytochromes P450nor And P450cam
pdb|1GEI|A Chain A, Structural Characterization Of N-Butyl-Isocyanide
Complexes Of Cytochromes P450nor And P450cam
pdb|1EHE|A Chain A, Crystal Structures Of Cytochrome P450nor And Its Mutants
(Ser286 Val, Thr) In The Ferric Resting State At
Cryogenic Temperature: A Comparative Analysis With
Monooxygenase Cytochrome P450s
pdb|1GED|A Chain A, A Positive Charge Route For The Access Of Nadh To Heme
Formed In The Distal Heme Pocket Of Cytochrome P450nor
pdb|2ROM| Crystal Structure Of Nitric Reductase From Denitrifying Fungus
Fusarium Oxysporum Complex With Carbon Monoxide
pdb|1ROM| Crystal Structure Of Nitric Reductase From Denitrifying Fungus
Fusarium Oxysporum
Length = 403
Score = 23.5 bits (49), Expect = 3.9
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 21 NGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDF 79
NG S SA + +LD+ +++++R++ + + C Q+ ++ KS +I F
Sbjct: 176 NGSSTAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAF 234
>pdb|1JFB|A Chain A, X-Ray Structure Of Nitric Oxide Reductase (Cytochrome
P450nor) In The Ferric Resting State At Atomic
Resolution
pdb|1JFC|A Chain A, X-Ray Structure Of Nitric Oxide Reductase (Cytochrome
P450nor) In The Ferrous Co State At Atomic Resolution
Length = 404
Score = 23.5 bits (49), Expect = 3.9
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 21 NGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDF 79
NG S SA + +LD+ +++++R++ + + C Q+ ++ KS +I F
Sbjct: 177 NGSSTAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAF 235
>pdb|1CMJ|A Chain A, Crystal Structures Of Ferric-No Complexes Of Fungal Nitric
Oxide Reductase And Their Ser286 Mutants At Cryogenic
Temperature
Length = 402
Score = 23.5 bits (49), Expect = 3.9
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 21 NGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDF 79
NG S SA + +LD+ +++++R++ + + C Q+ ++ KS +I F
Sbjct: 175 NGSSTAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAF 233
>pdb|1EHF|A Chain A, Crystal Structures Of Cytochrome P450nor And Its Mutants
(Ser286 Val, Thr) In The Ferric Resting State At
Cryogenic Temperature: A Comparative Analysis With
Monooxygenase Cytochrome P450s
Length = 403
Score = 23.5 bits (49), Expect = 3.9
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 21 NGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDF 79
NG S SA + +LD+ +++++R++ + + C Q+ ++ KS +I F
Sbjct: 176 NGSSTAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAF 234
>pdb|1CMN|A Chain A, Crystal Structures Of Ferric-No Complexes Of Fungal Nitric
Oxide Reductase And Their Ser286 Mutants At Cryogenic
Temperature
Length = 402
Score = 23.5 bits (49), Expect = 3.9
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 21 NGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDF 79
NG S SA + +LD+ +++++R++ + + C Q+ ++ KS +I F
Sbjct: 175 NGSSTAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAF 233
>pdb|1F25|A Chain A, Crystal Structure Of No Complex Of Thr243asn Mutants Of
Cytochrome P450nor
Length = 402
Score = 23.5 bits (49), Expect = 3.9
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 21 NGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDF 79
NG S SA + +LD+ +++++R++ + + C Q+ ++ KS +I F
Sbjct: 175 NGSSTAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAF 233
>pdb|1EHG|A Chain A, Crystal Structures Of Cytochrome P450nor And Its Mutants
(Ser286 Val, Thr) In The Ferric Resting State At
Cryogenic Temperature: A Comparative Analysis With
Monooxygenase Cytochrome P450s
Length = 403
Score = 23.5 bits (49), Expect = 3.9
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 21 NGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDF 79
NG S SA + +LD+ +++++R++ + + C Q+ ++ KS +I F
Sbjct: 176 NGSSTAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAF 234
>pdb|1F26|A Chain A, Crystal Structure Of No Complex Of Thr243val Mutants Of
Cytochrome P450nor
Length = 402
Score = 23.5 bits (49), Expect = 3.9
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 21 NGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDF 79
NG S SA + +LD+ +++++R++ + + C Q+ ++ KS +I F
Sbjct: 175 NGSSTAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAF 233
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.327 0.143 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 609,534
Number of Sequences: 13198
Number of extensions: 20183
Number of successful extensions: 67
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 18
length of query: 100
length of database: 2,899,336
effective HSP length: 76
effective length of query: 24
effective length of database: 1,896,288
effective search space: 45510912
effective search space used: 45510912
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)