BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645549|ref|NP_207725.1| hypothetical protein
[Helicobacter pylori 26695]
         (200 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1B6Z|A  Chain A, 6-Pyruvoyl Tetrahydropterin Synthase >g...    27  2.1
pdb|1E4F|T  Chain T, Ftsa (Apo Form) From Thermotoga Maritima      27  2.1
pdb|1E4G|T  Chain T, Ftsa (Atp-Bound Form) From Thermotoga M...    27  2.1
pdb|1AC5|    Crystal Structure Of Kex1(Delta)p, A Prohormone...    26  2.7
pdb|1LRZ|A  Chain A, X-Ray Crystal Structure Of Staphylococc...    25  8.0
pdb|1E3U|B  Chain B, Mad Structure Of Oxa10 Class D Beta-Lac...    25  8.0
pdb|1FOF|A  Chain A, Crystal Structure Of The Class D Beta-L...    25  8.0
pdb|1E3U|D  Chain D, Mad Structure Of Oxa10 Class D Beta-Lac...    25  8.0

>pdb|1B6Z|A Chain A, 6-Pyruvoyl Tetrahydropterin Synthase
 pdb|1B6Z|B Chain B, 6-Pyruvoyl Tetrahydropterin Synthase
 pdb|1GTQ|A Chain A, 6-Pyruvoyl Tetrahydropterin Synthase
 pdb|1GTQ|B Chain B, 6-Pyruvoyl Tetrahydropterin Synthase
 pdb|1B66|A Chain A, 6-Pyruvoyl Tetrahydropterin Synthase
 pdb|1B66|B Chain B, 6-Pyruvoyl Tetrahydropterin Synthase
          Length = 140

 Score = 26.6 bits (57), Expect = 2.1
 Identities = 21/78 (26%), Positives = 35/78 (43%), Gaps = 13/78 (16%)

Query: 3  IRRLYQFCASHVVRNCSSLKCAQNI-----------HGHNYEVEVFIETNRLDNANMALD 51
          + RL  F ASH + +  SL   +N+           HGHNY+V V I         M ++
Sbjct: 9  LSRLVSFSASHRLHS-PSLSAEENLKVFGKCNNPNGHGHNYKVVVTIHGEIDPVTGMVMN 67

Query: 52 FGLMQQEM-QVFIESFDH 68
             +++ M +  ++  DH
Sbjct: 68 LTDLKEYMEEAIMKPLDH 85



>pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima
          Length = 419

 Score = 26.6 bits (57), Expect = 2.1
 Identities = 18/44 (40%), Positives = 25/44 (55%), Gaps = 5/44 (11%)

Query: 123 DEGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHDHCVSFS 166
           DEGE+K  ++   E+ N    + LK+LE    KSL  D  +SFS
Sbjct: 46  DEGEIK-DAIAFKESVN----TLLKELEEQLQKSLRSDFVISFS 84



>pdb|1E4G|T Chain T, Ftsa (Atp-Bound Form) From Thermotoga Maritima
          Length = 419

 Score = 26.6 bits (57), Expect = 2.1
 Identities = 18/44 (40%), Positives = 25/44 (55%), Gaps = 5/44 (11%)

Query: 123 DEGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHDHCVSFS 166
           DEGE+K  ++   E+ N    + LK+LE    KSL  D  +SFS
Sbjct: 46  DEGEIK-DAIAFKESVN----TLLKELEEQLQKSLRSDFVISFS 84



>pdb|1AC5|   Crystal Structure Of Kex1(Delta)p, A Prohormone-Processing
           Carboxypeptidase From Saccharomyces Cerevisiae
          Length = 483

 Score = 26.2 bits (56), Expect = 2.7
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 22/110 (20%)

Query: 67  DHAHHFWDKESLEFQRFIENHCVRYVKCSFNLSAESYALMFL-YYLTKILQKSVFSNDEG 125
           D   HF D     F+ F E+   + +     LS ESYA  ++ ++   IL  + FS  +G
Sbjct: 146 DVTKHFMDFLENYFKIFPEDLTRKII-----LSGESYAGQYIPFFANAILNHNKFSKIDG 200

Query: 126 ELKVSSVRVHETKNGYA--------------ESFLKDLENPHFKSLVHDH 161
           +     ++     NG+               E  L D  NP+FK L + H
Sbjct: 201 D--TYDLKALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHLTNAH 248



>pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococcus Aureus Fema
          Length = 426

 Score = 24.6 bits (52), Expect = 8.0
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 119 VFSNDEGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHDHCVSFSQGIQNLWHDKDF 178
           +  N +G  K ++ +V   KNG    FL + E P F+S + D   S +   ++   DK +
Sbjct: 171 IIKNMDGLRKRNTKKVK--KNGVKVRFLSEEELPIFRSFMEDTSESKAFADRD---DKFY 225

Query: 179 FNKI 182
           +N++
Sbjct: 226 YNRL 229



>pdb|1E3U|B Chain B, Mad Structure Of Oxa10 Class D Beta-Lactamase
 pdb|1E3U|A Chain A, Mad Structure Of Oxa10 Class D Beta-Lactamase
 pdb|1K57|C Chain C, Oxa 10 Class D Beta-Lactamase At Ph 6.0
 pdb|1K54|D Chain D, Oxa-10 Class D Beta-Lactamase Partially Acylated With
          Reacted 6beta-(1-Hydroxy-1-Methylethyl) Penicillanic
          Acid
 pdb|1EWZ|A Chain A, Crystal Structure Of The Oxa-10 Beta-Lactamase From
          Pseudomonas Aeruginosa
 pdb|1EWZ|B Chain B, Crystal Structure Of The Oxa-10 Beta-Lactamase From
          Pseudomonas Aeruginosa
 pdb|1E3U|C Chain C, Mad Structure Of Oxa10 Class D Beta-Lactamase
 pdb|1K57|D Chain D, Oxa 10 Class D Beta-Lactamase At Ph 6.0
 pdb|1K56|D Chain D, Oxa 10 Class D Beta-Lactamase At Ph 6.5
 pdb|1EWZ|C Chain C, Crystal Structure Of The Oxa-10 Beta-Lactamase From
          Pseudomonas Aeruginosa
 pdb|1K54|C Chain C, Oxa-10 Class D Beta-Lactamase Partially Acylated With
          Reacted 6beta-(1-Hydroxy-1-Methylethyl) Penicillanic
          Acid
 pdb|1EWZ|D Chain D, Crystal Structure Of The Oxa-10 Beta-Lactamase From
          Pseudomonas Aeruginosa
          Length = 246

 Score = 24.6 bits (52), Expect = 8.0
 Identities = 15/49 (30%), Positives = 25/49 (50%)

Query: 14 VVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQVF 62
          V+   SS  CA N      +  +   T ++ NA + L+ G+++ E QVF
Sbjct: 22 VLCKSSSKSCATNDLARASKEYLPASTFKIPNAIIGLETGVIKNEHQVF 70



>pdb|1FOF|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-10
 pdb|1FOF|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-10
          Length = 246

 Score = 24.6 bits (52), Expect = 8.0
 Identities = 15/49 (30%), Positives = 25/49 (50%)

Query: 14 VVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQVF 62
          V+   SS  CA N      +  +   T ++ NA + L+ G+++ E QVF
Sbjct: 23 VLCKSSSKSCATNDLARASKEYLPASTFKIPNAIIGLETGVIKNEHQVF 71



>pdb|1E3U|D Chain D, Mad Structure Of Oxa10 Class D Beta-Lactamase
          Length = 246

 Score = 24.6 bits (52), Expect = 8.0
 Identities = 15/49 (30%), Positives = 25/49 (50%)

Query: 14 VVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQVF 62
          V+   SS  CA N      +  +   T ++ NA + L+ G+++ E QVF
Sbjct: 22 VLCKSSSKSCATNDLARASKEYLPASTFKIPNAIIGLETGVIKNEHQVF 70



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.325    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,106,238
Number of Sequences: 13198
Number of extensions: 39074
Number of successful extensions: 91
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 8
length of query: 200
length of database: 2,899,336
effective HSP length: 84
effective length of query: 116
effective length of database: 1,790,704
effective search space: 207721664
effective search space used: 207721664
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)