BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645550|ref|NP_207726.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(251 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1SPG|B Chain B, Carbonmonoxy Hemoglobin From The Teleos... 27 1.7
pdb|1QNF| Structure Of Photolyase 27 1.7
pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Phot... 27 1.7
pdb|1G8X|A Chain A, Structure Of A Genetically Engineered M... 27 2.9
pdb|1CYG| Cyclodextrin Glucanotransferase (E.C.2.4.1.19) ... 25 8.5
>pdb|1SPG|B Chain B, Carbonmonoxy Hemoglobin From The Teleost Fish Leiostomus
Xanthurus
Length = 147
Score = 27.3 bits (59), Expect = 1.7
Identities = 18/41 (43%), Positives = 27/41 (64%), Gaps = 2/41 (4%)
Query: 167 ILNNAKSA-HFKFVLES-QNAAQSIIEIQSLLKQLSLKNNE 205
IL NAK A H K V+ A Q++ I+++ KQLS+K++E
Sbjct: 54 ILGNAKVAEHGKTVMGGLDRAVQNMDNIKNVYKQLSIKHSE 94
>pdb|1QNF| Structure Of Photolyase
Length = 484
Score = 27.3 bits (59), Expect = 1.7
Identities = 14/41 (34%), Positives = 23/41 (55%), Gaps = 2/41 (4%)
Query: 46 DEILTGCDSLYAVHPKFKTSWDYYNEPKPLI--ERLEDLAP 84
D+IL+G + Y+V+ F +W +P P+ L DL+P
Sbjct: 136 DQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSP 176
>pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase
pdb|1DNP|B Chain B, Structure Of Deoxyribodipyrimidine Photolyase
Length = 471
Score = 27.3 bits (59), Expect = 1.7
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 32 NLSCKGFNCKTLLND-EILTGCDSLYAVHPKFKTSW 66
N+ C+GF+ +L ++TG +Y V FK +W
Sbjct: 122 NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAW 157
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 26.6 bits (57), Expect = 2.9
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 151 SLEEESKRIHLKALQNILNNAKSAHFKFV-LESQNAAQSIIEIQSLLKQLSLK----NNE 205
SLE ++++Q+ +N AH ++ E Q + E++++ L K E
Sbjct: 788 SLESRDFGDSIESVQSFMN----AHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKRE 843
Query: 206 IFLMPLGTNNNELDKNLKTLAPLAIKH 232
F+ P G NE+D L +H
Sbjct: 844 PFVAPAGLTPNEIDSTWSALEKAEQEH 870
>pdb|1CYG| Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 25.0 bits (53), Expect = 8.5
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 73 KPLIERLEDLAPNYKDFDFILTGGEPSL---YFNNPILISVLEHFYRQKIPLCVESNGSI 129
K L++ +++ P + ++ L+ E YF N +S+L+ + QK+ + +N
Sbjct: 236 KSLMDEIDNYRPVFTFGEWFLSENEVDANNHYFANESGMSLLDFRFGQKLRQVLRNNSDN 295
Query: 130 FFEFSPILKE 139
++ F+ ++++
Sbjct: 296 WYGFNQMIQD 305
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.140 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,489,243
Number of Sequences: 13198
Number of extensions: 63140
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 5
length of query: 251
length of database: 2,899,336
effective HSP length: 86
effective length of query: 165
effective length of database: 1,764,308
effective search space: 291110820
effective search space used: 291110820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)