BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645551|ref|NP_207727.1| hypothetical protein
[Helicobacter pylori 26695]
(161 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I12|D Chain D, Crystal Structure Of Saccharomyces Cere... 35 0.005
pdb|1I21|B Chain B, Crystal Structure Of Yeast Gna1 >gi|142... 35 0.005
pdb|1I1D|D Chain D, Crystal Structure Of Yeast Gna1 Bound T... 35 0.005
pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex Wi... 27 1.5
pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading E... 26 1.9
pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From... 26 1.9
pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falcip... 26 1.9
pdb|1B87|A Chain A, Crystal Structure Of An Aminoglycoside ... 25 3.3
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel... 24 7.3
pdb|1BOB| Histone Acetyltransferase Hat1 From Saccharomyc... 24 9.6
>pdb|1I12|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
Length = 160
Score = 34.7 bits (78), Expect = 0.005
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 83 INSAYQSQGLGQKLYESVEKYAFIKGYTKISLHVSKSQIKACNLYQKLGF 132
+NS YQ QGLG+ L + + F G KI L + +K Y+K GF
Sbjct: 103 VNSKYQGQGLGKLLIDQLVTIGFDYGCYKIILDCDEKNVK---FYEKCGF 149
>pdb|1I21|B Chain B, Crystal Structure Of Yeast Gna1
pdb|1I21|M Chain M, Crystal Structure Of Yeast Gna1
pdb|1I21|Y Chain Y, Crystal Structure Of Yeast Gna1
pdb|1I21|A Chain A, Crystal Structure Of Yeast Gna1
pdb|1I21|X Chain X, Crystal Structure Of Yeast Gna1
pdb|1I21|N Chain N, Crystal Structure Of Yeast Gna1
Length = 159
Score = 34.7 bits (78), Expect = 0.005
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 83 INSAYQSQGLGQKLYESVEKYAFIKGYTKISLHVSKSQIKACNLYQKLGF 132
+NS YQ QGLG+ L + + F G KI L + +K Y+K GF
Sbjct: 102 VNSKYQGQGLGKLLIDQLVTIGFDYGCYKIILDCDEKNVK---FYEKCGF 148
>pdb|1I1D|D Chain D, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|A Chain A, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|C Chain C, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|B Chain B, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
Length = 161
Score = 34.7 bits (78), Expect = 0.005
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 83 INSAYQSQGLGQKLYESVEKYAFIKGYTKISLHVSKSQIKACNLYQKLGF 132
+NS YQ QGLG+ L + + F G KI L + +K Y+K GF
Sbjct: 104 VNSKYQGQGLGKLLIDQLVTIGFDYGCYKIILDCDEKNVK---FYEKCGF 150
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 26.6 bits (57), Expect = 1.5
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 130 LGFVHIKEEDCVVELGEETLIFPTLFMEKIL 160
+G + +++ +C+V+ G + PT F+ K+L
Sbjct: 203 VGNISLEKANCIVDSGTSAITVPTDFLNKML 233
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
Length = 329
Score = 26.2 bits (56), Expect = 1.9
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 130 LGFVHIKEEDCVVELGEETLIFPTLFMEKIL 160
+G + +++ +C+V+ G + PT F+ K+L
Sbjct: 201 VGNIMLEKANCIVDSGTSAITVPTDFLNKML 231
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
Length = 331
Score = 26.2 bits (56), Expect = 1.9
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 130 LGFVHIKEEDCVVELGEETLIFPTLFMEKIL 160
+G + +++ +C+V+ G + PT F+ K+L
Sbjct: 203 VGNIMLEKANCIVDSGTSAITVPTDFLNKML 233
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 26.2 bits (56), Expect = 1.9
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 130 LGFVHIKEEDCVVELGEETLIFPTLFMEKIL 160
+G + +++ +C+V+ G + PT F+ K+L
Sbjct: 252 VGNIMLEKANCIVDSGTSAITVPTDFLNKML 282
>pdb|1B87|A Chain A, Crystal Structure Of An Aminoglycoside 6'-N-
Acetyltransferase
Length = 181
Score = 25.4 bits (54), Expect = 3.3
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 43 VQKLREHGGEFFEMREGNKLIGI 65
+Q LREH EF+E + G K++G+
Sbjct: 136 IQNLREHPYEFYE-KLGYKIVGV 157
>pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With
1,8-Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With
1,8-Diaminooctane
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With
1,8-Diaminooctane
pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
Length = 472
Score = 24.3 bits (51), Expect = 7.3
Identities = 21/76 (27%), Positives = 33/76 (42%), Gaps = 3/76 (3%)
Query: 15 EEFYAERIADNPLGFIQ-RLDLLPSISGFVQKLREHGGEFFE-MREGNKLIGICGLNP-I 71
+ FY ++ P+G + D L + G V EH E + G L GI I
Sbjct: 396 DRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILI 455
Query: 72 NQTEAELCKFHINSAY 87
N + ++CK+H+ Y
Sbjct: 456 NCAQKKMCKYHVQGKY 471
>pdb|1BOB| Histone Acetyltransferase Hat1 From Saccharomyces Cerevisiae In
Complex With Acetyl Coenzyme A
Length = 320
Score = 23.9 bits (50), Expect = 9.6
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 76 AELCKFHINSAYQSQGLGQKLYES-VEKYAFIKGYTKISL 114
A++ +F I YQ++G G LYE+ ++ + K T+I++
Sbjct: 215 AKISQFLIFPPYQNKGHGSCLYEAIIQSWLEDKSITEITV 254
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.140 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 924,559
Number of Sequences: 13198
Number of extensions: 35647
Number of successful extensions: 84
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 10
length of query: 161
length of database: 2,899,336
effective HSP length: 81
effective length of query: 80
effective length of database: 1,830,298
effective search space: 146423840
effective search space used: 146423840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)