BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645553|ref|NP_207729.1| hypothetical protein
[Helicobacter pylori 26695]
(264 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonucle... 28 1.4
pdb|1IC4|H Chain H, Crystal Structure Of Hyhel-10 Fv Mutant... 27 2.4
pdb|3HFM|H Chain H, IgG1 Fab Fragment (HyHEL-10) And Lysozy... 27 2.4
pdb|1C08|B Chain B, Crystal Structure Of Hyhel-10 Fv-Hen Ly... 27 2.4
pdb|1DQQ|B Chain B, Crystal Structure Of Anti-Lysozyme Anti... 27 3.2
pdb|1DQD|H Chain H, Crystal Structure Of Fab Hgr-2 F6, A Co... 27 3.2
pdb|1PSZ|A Chain A, Pneumococcal Surface Antigen Psaa 27 3.2
pdb|1AOA| N-Terminal Actin-Crosslinking Domain From Human... 27 3.2
pdb|1MUH|A Chain A, Crystal Structure Of Tn5 Transposase Co... 26 5.4
pdb|1IC5|H Chain H, Crystal Structure Of Hyhel-10 Fv Mutant... 26 5.4
pdb|1MUS|A Chain A, Crystal Structure Of Tn5 Transposase Co... 26 5.4
pdb|1IC7|H Chain H, Crystal Structure Of Hyhel-10 Fv Mutant... 26 5.4
pdb|1COL|A Chain A, Colicin A (C-Terminal Domain) (Pore-For... 25 7.0
pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve T... 25 7.0
pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX 25 7.0
pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agal... 25 7.0
pdb|1EKU|B Chain B, Crystal Structure Of A Biologically Act... 25 9.2
pdb|1HIG|A Chain A, Interferon-Gamma >gi|229989|pdb|1HIG|B ... 25 9.2
pdb|1FG9|A Chain A, 3:1 Complex Of Interferon-Gamma Recepto... 25 9.2
pdb|1B7E|A Chain A, Transposase Inhibitor 25 9.2
pdb|1FYH|A Chain A, 1:1 Complex Between An Interferon Gamma... 25 9.2
>pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
pdb|1EKE|A Chain A, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
Length = 230
Score = 27.7 bits (60), Expect = 1.4
Identities = 21/64 (32%), Positives = 27/64 (41%), Gaps = 9/64 (14%)
Query: 34 GFSNMGQDQVLK---TCLLLIGKDTTFELKNFNKKNIKEIEENWEKITESIYDAAKLLET 90
G G+ VL C I K+ ELK K+ KE+ +N + KLLE
Sbjct: 5 GIDEAGRGPVLGPXVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYLK------KLLEN 58
Query: 91 FGYV 94
GYV
Sbjct: 59 LGYV 62
>pdb|1IC4|H Chain H, Crystal Structure Of Hyhel-10 Fv Mutant(Hd32a)-Hen
Lysozyme Complex
Length = 114
Score = 26.9 bits (58), Expect = 2.4
Identities = 16/55 (29%), Positives = 22/55 (39%)
Query: 88 LETFGYVGYLGSAYILSSVAYFYFLNQKMDKNDEEQALKFVRNAQITSYFTPSTD 142
LE GYV Y GS Y S+ + + KN L V +Y+ + D
Sbjct: 45 LEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANWD 99
>pdb|3HFM|H Chain H, IgG1 Fab Fragment (HyHEL-10) And Lysozyme (E.C.3.2.1.17)
Complex
Length = 215
Score = 26.9 bits (58), Expect = 2.4
Identities = 16/55 (29%), Positives = 22/55 (39%)
Query: 88 LETFGYVGYLGSAYILSSVAYFYFLNQKMDKNDEEQALKFVRNAQITSYFTPSTD 142
LE GYV Y GS Y S+ + + KN L V +Y+ + D
Sbjct: 45 LEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANWD 99
>pdb|1C08|B Chain B, Crystal Structure Of Hyhel-10 Fv-Hen Lysozyme Complex
Length = 114
Score = 26.9 bits (58), Expect = 2.4
Identities = 16/55 (29%), Positives = 22/55 (39%)
Query: 88 LETFGYVGYLGSAYILSSVAYFYFLNQKMDKNDEEQALKFVRNAQITSYFTPSTD 142
LE GYV Y GS Y S+ + + KN L V +Y+ + D
Sbjct: 45 LEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANWD 99
>pdb|1DQQ|B Chain B, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1DQQ|D Chain D, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1DQJ|B Chain B, Crystal Structure Of The Anti-Lysozyme Antibody Hyhel-63
Complexed With Hen Egg White Lysozyme
pdb|1DQM|H Chain H, Crystal Structure Of Anti-Lysozyme Antibody
Length = 210
Score = 26.6 bits (57), Expect = 3.2
Identities = 15/53 (28%), Positives = 21/53 (39%)
Query: 88 LETFGYVGYLGSAYILSSVAYFYFLNQKMDKNDEEQALKFVRNAQITSYFTPS 140
LE GY+ Y GS Y S+ + + KN L V +Y+ S
Sbjct: 45 LEYMGYISYSGSTYYHPSLKSRISITRDTSKNQYYLQLNSVTTEDTATYYCAS 97
>pdb|1DQD|H Chain H, Crystal Structure Of Fab Hgr-2 F6, A Competitive
Antagonist Of The Glucagon Receptor
Length = 222
Score = 26.6 bits (57), Expect = 3.2
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 88 LETFGYVGYLGSAYILSSVAYFYFLNQKMDKNDEEQALKFVRNAQITSYFTPS 140
LE GY+ Y GS Y S+ + + +N LK V +Y+ S
Sbjct: 45 LEYMGYISYSGSTYYNPSLKSRLSITRDTSRNQYYLQLKSVTPEDTATYYCAS 97
>pdb|1PSZ|A Chain A, Pneumococcal Surface Antigen Psaa
Length = 303
Score = 26.6 bits (57), Expect = 3.2
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 60 KNFNKKNIKEIEENWEKITESIYD-------AAKLLETF-GYVGYLGSAYILSSVAYFYF 111
K F +KN+KE + +K+ + D KL+ T G Y AY + S AY +
Sbjct: 160 KEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPS-AYIWE 218
Query: 112 LNQKMDKNDEE--QALKFVRNAQITSYFTPST 141
+N + + E+ ++ +R ++ S F S+
Sbjct: 219 INTEEEGTPEQIKTLVEKLRQTKVPSLFVESS 250
>pdb|1AOA| N-Terminal Actin-Crosslinking Domain From Human Fimbrin
Length = 275
Score = 26.6 bits (57), Expect = 3.2
Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 30/117 (25%)
Query: 6 LLMSILTASFSSDIREKMNELVDTLKDKGFSNMGQDQVLKTCLLLIGKDTTFELKNFNKK 65
LL I+ +DI NE + L G + L+ + L ++ NF+ +
Sbjct: 130 LLWQIIKIGLFADIELSRNEALAALLRDG-------ETLEELMKLSPEELLLRWANFHLE 182
Query: 66 NIKEIEENWEKITESIYDAAKLLETFGYVGYLGSAYILSSVAYFYFLNQKMDKNDEE 122
N W+KI SA I S AYF+ LNQ K +E
Sbjct: 183 N-----SGWQKINNF------------------SADIKDSKAYFHLLNQIAPKGQKE 216
>pdb|1MUH|A Chain A, Crystal Structure Of Tn5 Transposase Complexed With
Transposon End Dna
Length = 481
Score = 25.8 bits (55), Expect = 5.4
Identities = 17/72 (23%), Positives = 32/72 (43%), Gaps = 8/72 (11%)
Query: 112 LNQKMDKNDEEQALKFVRNAQITSYFTPSTDTKLNNIDNSMKDVKIFESFNHNLAKHQTS 171
++ + K +E A +F+RN P+ + +M+ VK+ + F LA T+
Sbjct: 52 ISSEGSKAAQEGAYRFIRN--------PNVSAEAIRKAGAMQTVKLAQEFPELLAIEDTT 103
Query: 172 PLKITNDAIEEM 183
L + EE+
Sbjct: 104 SLSYRHQVAEEL 115
>pdb|1IC5|H Chain H, Crystal Structure Of Hyhel-10 Fv Mutant(Hd99a)-Hen
Lysozyme Complex
Length = 114
Score = 25.8 bits (55), Expect = 5.4
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 88 LETFGYVGYLGSAYILSSVAYFYFLNQKMDKNDEEQALKFVRNAQITSYF 137
LE GYV Y GS Y S+ + + KN L V +Y+
Sbjct: 45 LEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYY 94
>pdb|1MUS|A Chain A, Crystal Structure Of Tn5 Transposase Complexed With
Resolved Outside End Dna
pdb|1MUR|A Chain A, Tn5 Transposase: 20mer Outside End 2 Mn Complex
Length = 477
Score = 25.8 bits (55), Expect = 5.4
Identities = 17/72 (23%), Positives = 32/72 (43%), Gaps = 8/72 (11%)
Query: 112 LNQKMDKNDEEQALKFVRNAQITSYFTPSTDTKLNNIDNSMKDVKIFESFNHNLAKHQTS 171
++ + K +E A +F+RN P+ + +M+ VK+ + F LA T+
Sbjct: 48 ISSEGSKAAQEGAYRFIRN--------PNVSAEAIRKAGAMQTVKLAQEFPELLAIEDTT 99
Query: 172 PLKITNDAIEEM 183
L + EE+
Sbjct: 100 SLSYRHQVAEEL 111
>pdb|1IC7|H Chain H, Crystal Structure Of Hyhel-10 Fv Mutant(Hd32a99a)-Hen
Lysozyme Complex
Length = 114
Score = 25.8 bits (55), Expect = 5.4
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 88 LETFGYVGYLGSAYILSSVAYFYFLNQKMDKNDEEQALKFVRNAQITSYF 137
LE GYV Y GS Y S+ + + KN L V +Y+
Sbjct: 45 LEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYY 94
>pdb|1COL|A Chain A, Colicin A (C-Terminal Domain) (Pore-Forming Domain)
pdb|1COL|B Chain B, Colicin A (C-Terminal Domain) (Pore-Forming Domain)
Length = 204
Score = 25.4 bits (54), Expect = 7.0
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 18 DIREKMNELVDTLKDKGFSNMGQDQVLKTCLLLIGKDTTFELKNFNKKNIKEIEE 72
++ EK +EL+ + DK ++G I KD +KNF K I+ ++
Sbjct: 10 ELLEKTSELIAGMGDKIGEHLGDKYKA------IAKDIADNIKNFQGKTIRSFDD 58
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of
Hrs, A Protein Involved In Membrane Trafficking And
Signal Transduction
Length = 220
Score = 25.4 bits (54), Expect = 7.0
Identities = 19/71 (26%), Positives = 32/71 (44%), Gaps = 1/71 (1%)
Query: 5 DLLMSILTASFSSDIREKMNELVDTLKDKGFSNMGQDQVLKTCLLLIGKDTTF-ELKNFN 63
++ S L ++ ++R+KM ELV T S+ + T +L K TF EL+ +
Sbjct: 88 EMFSSFLESTPHENVRQKMLELVQTWAYAFRSSDKYQAIKDTMTILKAKGHTFPELREAD 147
Query: 64 KKNIKEIEENW 74
+ NW
Sbjct: 148 AMFTADTAPNW 158
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 174
Score = 25.4 bits (54), Expect = 7.0
Identities = 10/41 (24%), Positives = 23/41 (55%)
Query: 45 KTCLLLIGKDTTFELKNFNKKNIKEIEENWEKITESIYDAA 85
KTCLL++ F + + + +IE + +++ +++D A
Sbjct: 16 KTCLLIVNSKDQFYVPTVFENYVADIEVDGKQVELALWDTA 56
>pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Hexasaccharide Unit Of Hyaluronan
pdb|1I8Q|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Enzyme Product, Unsaturated
Disaccharide Hyaluronan
pdb|1F1S|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase At 2.1 Angstrom Resolution
Length = 814
Score = 25.4 bits (54), Expect = 7.0
Identities = 17/71 (23%), Positives = 29/71 (39%), Gaps = 2/71 (2%)
Query: 109 FYFLNQKMDKNDEEQALKFVRNAQITSYFTPSTDTKLNNIDNSMKDVKIFESFNHNLA-- 166
F ++QK D + V N TS+ + ++ ++NS K I++ + A
Sbjct: 707 FITISQKHDNKGDSYGYMMVPNIDRTSFDKLANSKEVELLENSSKQQVIYDKNSQTWAVI 766
Query: 167 KHQTSPLKITN 177
KH I N
Sbjct: 767 KHDNQESLINN 777
>pdb|1EKU|B Chain B, Crystal Structure Of A Biologically Active Single Chain
Mutant Of Human Ifn-Gamma
pdb|1EKU|A Chain A, Crystal Structure Of A Biologically Active Single Chain
Mutant Of Human Ifn-Gamma
Length = 265
Score = 25.0 bits (53), Expect = 9.2
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 6 LLMSILTASFSSDIREKMNELVDTLKDKGFSNMGQDQVLKTCLLLIGKDTTFELKNFNKK 65
L + IL R+ M + + K F N DQ ++ + I +D + N NKK
Sbjct: 29 LFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKK 88
Query: 66 NIKEIEENWEKIT 78
+++EK+T
Sbjct: 89 K----RDDFEKLT 97
Score = 25.0 bits (53), Expect = 9.2
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 6 LLMSILTASFSSDIREKMNELVDTLKDKGFSNMGQDQVLKTCLLLIGKDTTFELKNFNKK 65
L + IL R+ M + + K F N DQ ++ + I +D + N NKK
Sbjct: 155 LFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKK 214
Query: 66 NIKEIEENWEKIT 78
+++EK+T
Sbjct: 215 K----RDDFEKLT 223
>pdb|1HIG|A Chain A, Interferon-Gamma
pdb|1HIG|B Chain B, Interferon-Gamma
pdb|1HIG|C Chain C, Interferon-Gamma
pdb|1HIG|D Chain D, Interferon-Gamma
Length = 138
Score = 25.0 bits (53), Expect = 9.2
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 6 LLMSILTASFSSDIREKMNELVDTLKDKGFSNMGQDQVLKTCLLLIGKDTTFELKNFNKK 65
L + IL R+ M + + K F N DQ ++ + I +D + N NKK
Sbjct: 28 LFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKK 87
Query: 66 NIKEIEENWEKIT 78
+++EK+T
Sbjct: 88 K----RDDFEKLT 96
>pdb|1FG9|A Chain A, 3:1 Complex Of Interferon-Gamma Receptor With
Interferon- Gamma Dimer
pdb|1FG9|B Chain B, 3:1 Complex Of Interferon-Gamma Receptor With
Interferon- Gamma Dimer
Length = 134
Score = 25.0 bits (53), Expect = 9.2
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 6 LLMSILTASFSSDIREKMNELVDTLKDKGFSNMGQDQVLKTCLLLIGKDTTFELKNFNKK 65
L + IL R+ M + + K F N DQ ++ + I +D + N NKK
Sbjct: 29 LFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKK 88
Query: 66 NIKEIEENWEKIT 78
+++EK+T
Sbjct: 89 K----RDDFEKLT 97
>pdb|1B7E|A Chain A, Transposase Inhibitor
Length = 420
Score = 25.0 bits (53), Expect = 9.2
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 121 EEQALKFVRNAQITSYFTPSTDTKLNNIDNSMKDVKIFESFNHNLAKHQTSPLKITNDAI 180
+E A +F+RN P+ + +M+ VK+ + F LA T+ L +
Sbjct: 2 QEGAYRFIRN--------PNVSAEAIRKAGAMQTVKLAQEFPELLAIEDTTSLSYRHQVA 53
Query: 181 EEM 183
EE+
Sbjct: 54 EEL 56
>pdb|1FYH|A Chain A, 1:1 Complex Between An Interferon Gamma Single-Chain
Variant And Its Receptor
pdb|1FYH|D Chain D, 1:1 Complex Between An Interferon Gamma Single-Chain
Variant And Its Receptor
Length = 258
Score = 25.0 bits (53), Expect = 9.2
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 6 LLMSILTASFSSDIREKMNELVDTLKDKGFSNMGQDQVLKTCLLLIGKDTTFELKNFNKK 65
L + IL R+ M + + K F N DQ ++ + I +D + N NKK
Sbjct: 29 LFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKK 88
Query: 66 NIKEIEENWEKIT 78
+++EK+T
Sbjct: 89 K----RDDFEKLT 97
Score = 25.0 bits (53), Expect = 9.2
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 6 LLMSILTASFSSDIREKMNELVDTLKDKGFSNMGQDQVLKTCLLLIGKDTTFELKNFNKK 65
L + IL R+ M + + K F N DQ ++ + I +D + N NKK
Sbjct: 153 LFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKK 212
Query: 66 NIKEIEENWEKIT 78
+++EK+T
Sbjct: 213 K----RDDFEKLT 221
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.133 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,513,901
Number of Sequences: 13198
Number of extensions: 62183
Number of successful extensions: 168
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 23
length of query: 264
length of database: 2,899,336
effective HSP length: 86
effective length of query: 178
effective length of database: 1,764,308
effective search space: 314046824
effective search space used: 314046824
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)