BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645554|ref|NP_207730.1| hypothetical protein
[Helicobacter pylori 26695]
(115 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1C9W|A Chain A, Cho Reductase With Nadp+ 26 0.97
pdb|1AH8|B Chain B, Structure Of The Orthorhombic Form Of T... 25 2.2
pdb|1A4H| Structure Of The N-Terminal Domain Of The Yeast... 25 2.2
pdb|1GC5|A Chain A, Crystal Structure Of A Novel Adp-Depend... 25 2.8
pdb|1QLA|B Chain B, Respiratory Complex Ii-Like Fumarate Re... 25 2.8
pdb|1FRB| Fr-1 ProteinNADPHZOPOLRESTAT COMPLEX 25 2.8
pdb|1KKU|A Chain A, Crystal Structure Of Nuclear Human Nico... 24 4.8
pdb|1GZU|A Chain A, Crystal Structure Of Human Nicotinamide... 24 4.8
pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinosit... 23 6.3
pdb|1HE8|A Chain A, Ras G12v - Pi 3-Kinase Gamma Complex 23 6.3
pdb|1E8W|A Chain A, Structure Determinants Of Phosphoinosit... 23 6.3
pdb|1E7U|A Chain A, Structure Determinants Of Phosphoinosit... 23 6.3
pdb|1RRO| Rat Oncomodulin >gi|230200|pdb|1OMD| Oncomodulin 23 6.3
pdb|1JWH|A Chain A, Crystal Structure Of Human Protein Kina... 23 6.3
pdb|1AMW| Adp Binding Site In The Hsp90 Molecular Chaperone 23 8.2
pdb|1GKF|B Chain B, Crystal Structures Of Penicillin Acylas... 23 8.2
pdb|1BGQ| Radicicol Bound To The Atp Binding Site Of The ... 23 8.2
pdb|1AJQ|B Chain B, Penicillin Acylase Complexed With Thiop... 23 8.2
pdb|1E3A|B Chain B, A Slow Processing Precursor Penicillin ... 23 8.2
pdb|1AM1| Atp Binding Site In The Hsp90 Molecular Chaperone 23 8.2
pdb|1GK9|B Chain B, Crystal Structures Of Penicillin Acylas... 23 8.2
pdb|1FXH|B Chain B, Mutant Of Penicillin Acylase Impaired I... 23 8.2
>pdb|1C9W|A Chain A, Cho Reductase With Nadp+
Length = 315
Score = 26.2 bits (56), Expect = 0.97
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 82 YQFITNYDVRKPHNEKIRIEQINRDDLYIVA 112
Y + ++V + EKI+ + + R+DL+IV+
Sbjct: 46 YAYYNEHEVGEAIQEKIKEKAVRREDLFIVS 76
>pdb|1AH8|B Chain B, Structure Of The Orthorhombic Form Of The N-Terminal
Domain Of The Yeast Hsp90 Chaperone
pdb|1AH8|A Chain A, Structure Of The Orthorhombic Form Of The N-Terminal
Domain Of The Yeast Hsp90 Chaperone
pdb|1AH6| Structure Of The Tetragonal Form Of The N-Terminal Domain Of The
Yeast Hsp90 Chaperone
Length = 220
Score = 25.0 bits (53), Expect = 2.2
Identities = 20/64 (31%), Positives = 34/64 (52%), Gaps = 7/64 (10%)
Query: 3 VFLDKSIKDVVDGLNVRYFLPDIQREYVWLKKADEKKIEQLF--DSILRGYPIGSFLFWK 60
V LD+ + + G +R FL D Q EY+ +EK+I+++ S YPI + +
Sbjct: 158 VTLDEVNERIGRGTILRLFLKDDQLEYL-----EEKRIKEVIKRHSEFVAYPIQLVVTKE 212
Query: 61 LQKE 64
++KE
Sbjct: 213 VEKE 216
>pdb|1A4H| Structure Of The N-Terminal Domain Of The Yeast Hsp90 Chaperone In
Complex With Geldanamycin
Length = 230
Score = 25.0 bits (53), Expect = 2.2
Identities = 20/64 (31%), Positives = 34/64 (52%), Gaps = 7/64 (10%)
Query: 3 VFLDKSIKDVVDGLNVRYFLPDIQREYVWLKKADEKKIEQLF--DSILRGYPIGSFLFWK 60
V LD+ + + G +R FL D Q EY+ +EK+I+++ S YPI + +
Sbjct: 168 VTLDEVNERIGRGTILRLFLKDDQLEYL-----EEKRIKEVIKRHSEFVAYPIQLVVTKE 222
Query: 61 LQKE 64
++KE
Sbjct: 223 VEKE 226
>pdb|1GC5|A Chain A, Crystal Structure Of A Novel Adp-Dependent Glucokinase
From Thermococcus Litoralis
Length = 467
Score = 24.6 bits (52), Expect = 2.8
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 40 IEQLFDSILRGYPIGSFLFWKLQKEDIAK 68
IE+L ILR +G + W ++ E++ +
Sbjct: 78 IEELLGGILRSIKLGKAMEWFVESEEVRR 106
>pdb|1QLA|B Chain B, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLA|E Chain E, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|B Chain B, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|E Chain E, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|H Chain H, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|K Chain K, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 239
Score = 24.6 bits (52), Expect = 2.8
Identities = 10/39 (25%), Positives = 22/39 (55%)
Query: 77 LNFQLYQFITNYDVRKPHNEKIRIEQINRDDLYIVANSV 115
L +++++ V KPH ++ +IE+ ++IV N +
Sbjct: 5 LTIRVFKYDPQSAVSKPHFQEYKIEEAPSMTIFIVLNMI 43
>pdb|1FRB| Fr-1 ProteinNADPHZOPOLRESTAT COMPLEX
Length = 315
Score = 24.6 bits (52), Expect = 2.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 82 YQFITNYDVRKPHNEKIRIEQINRDDLYIVA 112
Y + +V + EKI+ + + R+DL+IV+
Sbjct: 46 YAYCNENEVGEAIQEKIKEKAVQREDLFIVS 76
>pdb|1KKU|A Chain A, Crystal Structure Of Nuclear Human Nicotinamide
Mononucleotide Adenylyltransferase
Length = 279
Score = 23.9 bits (50), Expect = 4.8
Identities = 7/16 (43%), Positives = 13/16 (80%)
Query: 15 GLNVRYFLPDIQREYV 30
G ++RY +PD+ +EY+
Sbjct: 233 GQSIRYLVPDLVQEYI 248
>pdb|1GZU|A Chain A, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|B Chain B, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|C Chain C, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
Length = 290
Score = 23.9 bits (50), Expect = 4.8
Identities = 7/16 (43%), Positives = 13/16 (80%)
Query: 15 GLNVRYFLPDIQREYV 30
G ++RY +PD+ +EY+
Sbjct: 244 GQSIRYLVPDLVQEYI 259
>pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8Z|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 966
Score = 23.5 bits (49), Expect = 6.3
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 48 LRGYPIGSFLFWKLQKEDIAKS 69
LR IG FLFW L+ E IA+S
Sbjct: 544 LRNKRIGHFLFWFLRSE-IAQS 564
>pdb|1HE8|A Chain A, Ras G12v - Pi 3-Kinase Gamma Complex
Length = 965
Score = 23.5 bits (49), Expect = 6.3
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 48 LRGYPIGSFLFWKLQKEDIAKS 69
LR IG FLFW L+ E IA+S
Sbjct: 543 LRNKRIGHFLFWFLRSE-IAQS 563
>pdb|1E8W|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E7V|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E90|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8X|A Chain A, Structural Insights Into Phoshoinositide 3-Kinase
Enzymatic Mechanism And Signalling
Length = 961
Score = 23.5 bits (49), Expect = 6.3
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 48 LRGYPIGSFLFWKLQKEDIAKS 69
LR IG FLFW L+ E IA+S
Sbjct: 545 LRNKRIGHFLFWFLRSE-IAQS 565
>pdb|1E7U|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 961
Score = 23.5 bits (49), Expect = 6.3
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 48 LRGYPIGSFLFWKLQKEDIAKS 69
LR IG FLFW L+ E IA+S
Sbjct: 545 LRNKRIGHFLFWFLRSE-IAQS 565
>pdb|1RRO| Rat Oncomodulin
pdb|1OMD| Oncomodulin
Length = 108
Score = 23.5 bits (49), Expect = 6.3
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 4 FLDKSIKDVVDGLNVRYFLPDIQREYVWLKKADEKKIEQLFDS 46
F+D +DG ++YFL Q + L +++ K + D+
Sbjct: 49 FIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADN 91
>pdb|1JWH|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme
pdb|1JWH|B Chain B, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme
Length = 337
Score = 23.5 bits (49), Expect = 6.3
Identities = 19/66 (28%), Positives = 34/66 (50%), Gaps = 7/66 (10%)
Query: 32 LKKADEKKIEQLFDSI--LRGYPIGSFLFWKLQKEDIAKSDEQDSDKLNF----QLYQFI 85
LK +KKI++ + LRG P + K+ ++++ + +N QLYQ +
Sbjct: 70 LKPVKKKKIKREIKILENLRGGP-NIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTL 128
Query: 86 TNYDVR 91
T+YD+R
Sbjct: 129 TDYDIR 134
>pdb|1AMW| Adp Binding Site In The Hsp90 Molecular Chaperone
Length = 214
Score = 23.1 bits (48), Expect = 8.2
Identities = 18/53 (33%), Positives = 28/53 (51%), Gaps = 7/53 (13%)
Query: 3 VFLDKSIKDVVDGLNVRYFLPDIQREYVWLKKADEKKIEQLF--DSILRGYPI 53
V LD+ + + G +R FL D Q EY+ +EK+I+++ S YPI
Sbjct: 158 VTLDEVNERIGRGTILRLFLKDDQLEYL-----EEKRIKEVIKRHSEFVAYPI 205
>pdb|1GKF|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1GM7|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1GM8|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
Length = 557
Score = 23.1 bits (48), Expect = 8.2
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 16 LNVRYFLPDIQREYVWLKKADEKKIEQLFDSILR 49
LN+R FLP +Q L ++D ++ QL +++ R
Sbjct: 294 LNLRLFLPTLQAATSGLTQSDPRR--QLVETLTR 325
>pdb|1BGQ| Radicicol Bound To The Atp Binding Site Of The N-Terminal Domain
Of The Yeast Hsp90 Chaperone
Length = 225
Score = 23.1 bits (48), Expect = 8.2
Identities = 18/53 (33%), Positives = 28/53 (51%), Gaps = 7/53 (13%)
Query: 3 VFLDKSIKDVVDGLNVRYFLPDIQREYVWLKKADEKKIEQLF--DSILRGYPI 53
V LD+ + + G +R FL D Q EY+ +EK+I+++ S YPI
Sbjct: 169 VTLDEVNERIGRGTILRLFLKDDQLEYL-----EEKRIKEVIKRHSEFVAYPI 216
>pdb|1AJQ|B Chain B, Penicillin Acylase Complexed With Thiopheneacetic Acid
pdb|1AJP|B Chain B, Penicillin Acylase Complexed With
2,5-Dihydroxyphenylacetic Acid
pdb|1AI4|B Chain B, Penicillin Acylase Complexed With
3,4-Dihydroxyphenylacetic Acid
pdb|1AI5|B Chain B, Penicillin Acylase Complexed With M-Nitrophenylacetic Acid
pdb|1AJN|B Chain B, Penicillin Acylase Complexed With P-Nitrophenylacetic Acid
pdb|1AI7|B Chain B, Penicillin Acylase Complexed With Phenol
pdb|1AI6|B Chain B, Penicillin Acylase With P-Hydroxyphenylacetic Acid
Length = 557
Score = 23.1 bits (48), Expect = 8.2
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 16 LNVRYFLPDIQREYVWLKKADEKKIEQLFDSILR 49
LN+R FLP +Q L ++D ++ QL +++ R
Sbjct: 294 LNLRLFLPTLQAATSGLTQSDPRR--QLVETLTR 325
>pdb|1E3A|B Chain B, A Slow Processing Precursor Penicillin Acylase From
Escherichia Coli
Length = 560
Score = 23.1 bits (48), Expect = 8.2
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 16 LNVRYFLPDIQREYVWLKKADEKKIEQLFDSILR 49
LN+R FLP +Q L ++D ++ QL +++ R
Sbjct: 297 LNLRLFLPTLQAATSGLTQSDPRR--QLVETLTR 328
>pdb|1AM1| Atp Binding Site In The Hsp90 Molecular Chaperone
Length = 213
Score = 23.1 bits (48), Expect = 8.2
Identities = 18/53 (33%), Positives = 28/53 (51%), Gaps = 7/53 (13%)
Query: 3 VFLDKSIKDVVDGLNVRYFLPDIQREYVWLKKADEKKIEQLF--DSILRGYPI 53
V LD+ + + G +R FL D Q EY+ +EK+I+++ S YPI
Sbjct: 157 VTLDEVNERIGRGTILRLFLKDDQLEYL-----EEKRIKEVIKRHSEFVAYPI 204
>pdb|1GK9|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1GM9|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1PNK|B Chain B, Mol_id: 1; Molecule: Penicillin Amidohydrolase; Chain: A,
B; Ec: 3.5.1.11
pdb|1PNL|B Chain B, Mol_id: 1; Molecule: Penicillin Amidohydrolase; Chain: A,
B; Ec: 3.5.1.11; Heterogen: Phenylacetic Acid
pdb|1PNM|B Chain B, Mol_id: 1; Molecule: Penicillin Amidohydrolase; Chain: A,
B; Ec: 3.5.1.11; Other_details: Phenylmethyl Sulphonyl
Derivative Of Ser-B1
Length = 557
Score = 23.1 bits (48), Expect = 8.2
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 16 LNVRYFLPDIQREYVWLKKADEKKIEQLFDSILR 49
LN+R FLP +Q L ++D ++ QL +++ R
Sbjct: 294 LNLRLFLPTLQAATSGLTQSDPRR--QLVETLTR 325
>pdb|1FXH|B Chain B, Mutant Of Penicillin Acylase Impaired In Catalysis With
Phenylacetic Acid In The Active Site
pdb|1FXV|B Chain B, Penicillin Acylase Mutant Impaired In Catalysis With
Penicillin G In The Active Site
Length = 557
Score = 23.1 bits (48), Expect = 8.2
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 16 LNVRYFLPDIQREYVWLKKADEKKIEQLFDSILR 49
LN+R FLP +Q L ++D ++ QL +++ R
Sbjct: 294 LNLRLFLPTLQAATSGLTQSDPRR--QLVETLTR 325
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.142 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 654,935
Number of Sequences: 13198
Number of extensions: 24306
Number of successful extensions: 69
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 22
length of query: 115
length of database: 2,899,336
effective HSP length: 76
effective length of query: 39
effective length of database: 1,896,288
effective search space: 73955232
effective search space used: 73955232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)