BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645559|ref|NP_207735.1| D-amino acid dehydrogenase
(dadA) [Helicobacter pylori 26695]
(410 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxida... 38 0.002
pdb|1GOS|A Chain A, Human Monoamine Oxidase B >gi|17942912|... 37 0.004
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamid... 37 0.004
pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase... 35 0.012
pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Comp... 33 0.045
pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Fo... 33 0.045
pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By M... 33 0.059
pdb|1LVL| Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Co... 32 0.10
pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glyci... 32 0.13
pdb|1L9E|A Chain A, Role Of Histidine 269 In Catalysis By M... 31 0.22
pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant F... 31 0.29
pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavo... 31 0.29
pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant F... 31 0.29
pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant F... 31 0.29
pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frig... 31 0.29
pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant F... 31 0.29
pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant F... 31 0.29
pdb|1C0P|A Chain A, D-Amino Acic Oxidase In Complex With D-... 31 0.29
pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frig... 31 0.29
pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT ... 31 0.29
pdb|1KNR|A Chain A, L-Aspartate Oxidase: R386l Mutant >gi|2... 30 0.38
pdb|1OJT| Structure Of Dihydrolipoamide Dehydrogenase 30 0.38
pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Impli... 30 0.38
pdb|1BHY| Low Temperature Middle Resolution Structure Of ... 30 0.38
pdb|1QO8|A Chain A, The Structure Of The Open Conformation ... 30 0.38
pdb|1JOA| Nadh Peroxidase With Cysteine-Sulfenic Acid 30 0.50
pdb|1NHP| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 30 0.50
pdb|1AN9|A Chain A, D-Amino Acid Oxidase Complex With O-Ami... 30 0.50
pdb|1NHS| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 30 0.50
pdb|1AA8|A Chain A, Porcine Kidney D-Amino Acid Oxidase >gi... 30 0.50
pdb|1NHQ| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 30 0.50
pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexe... 30 0.50
pdb|1NHR| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 30 0.50
pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mu... 30 0.50
pdb|1NPX| Nadh Peroxidase (E.C.1.11.1.1) Non-Active Form ... 30 0.50
pdb|3LAD|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8... 30 0.65
pdb|1UOR| X-Ray Study Of Recombinant Human Serum Albumin.... 30 0.65
pdb|1BKE| Human Serum Albumin In A Complex With Myristic ... 30 0.65
pdb|3HAD|A Chain A, Biochemical Characterization And Struct... 29 1.1
pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl C... 29 1.1
pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Compl... 29 1.1
pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mu... 29 1.1
pdb|1ELI|A Chain A, Complex Of Monomeric Sarcosine Oxidase ... 29 1.1
pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Compl... 29 1.1
pdb|1LSU|A Chain A, Ktn Bsu222 Crystal Structure In Complex... 29 1.1
pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9o... 29 1.1
pdb|2HDH|A Chain A, Biochemical Characterization And Struct... 28 1.9
pdb|1LPF|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8... 28 2.5
pdb|1LSH|B Chain B, Lipid-Protein Interactions In Lipovitellin 27 3.2
pdb|1GRT| Human Glutathione Reductase A34eR37W MUTANT 27 4.2
pdb|1KYQ|A Chain A, Met8p: A Bifunctional Nad-Dependent Deh... 27 4.2
pdb|5GRT| Human Glutathione Reductase A34e, R37w Mutant, ... 27 4.2
pdb|1PJC|A Chain A, L-Alanine Dehydrogenase Complexed With ... 27 5.5
pdb|1PHH| p-Hydroxybenzoate Hydroxylase (PHBH) (E.C.1.14.... 27 5.5
pdb|1CJ4|A Chain A, Mutant Q34t Of Para-Hydroxybenzoate Hyd... 27 5.5
pdb|1DOB| P-Hydroxybenzoate Hydroxylase Mutant With Tyr 2... 27 5.5
pdb|1PBD| P-Hydroxybenzoate Hydroxylase (Phbh) (E.C.1.14.... 27 5.5
pdb|1BKW|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mu... 27 5.5
pdb|1PBF| P-Hydroxybenzoate Hydroxylase (Phbh) (E.C.1.14.... 27 5.5
pdb|1BGJ| P-Hydroxybenzoate Hydroxylase (Phbh) Mutant Wit... 27 5.5
pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Compl... 27 5.5
pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxy... 27 5.5
pdb|1BF3| P-Hydroxybenzoate Hydroxylase (Phbh) Mutant Wit... 27 5.5
pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Co... 27 5.5
pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate... 27 5.5
pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxy... 27 5.5
pdb|1BGN| P-Hydroxybenzoate Hydroxylase (Phbh) Mutant Wit... 27 5.5
pdb|1PXA| P-Hydroxybenzoate Hydroxylase (E.C.1.14.13.2) M... 27 5.5
pdb|1PXC| P-Hydroxybenzoate Hydroxylase (E.C.1.14.13.2) M... 27 5.5
pdb|1PXB| P-Hydroxybenzoate Hydroxylase (E.C.1.14.13.2) M... 27 5.5
pdb|1DOC| P-Hydroxybenzoate Hydroxylase Complexed With 4-... 27 5.5
pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate... 27 5.5
pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogen... 26 7.2
pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase >gi|158... 26 7.2
pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Fer... 26 7.2
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) F... 26 7.2
pdb|1KRQ|A Chain A, Crystal Structure Analysis Of Campyloba... 26 7.2
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) F... 26 7.2
pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated... 26 9.4
pdb|3GRS| Glutathione Reductase (E.C.1.6.4.2), Oxidized F... 26 9.4
pdb|1GSN| Human Glutathione Reductase Modified By Dinitro... 26 9.4
pdb|1DNC| Human Glutathione Reductase Modified By Digluta... 26 9.4
pdb|1XAN| Human Glutathione Reductase In Complex With A X... 26 9.4
>pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O- Aminobenzoate.
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
Length = 498
Score = 37.7 bits (86), Expect = 0.002
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 3 KEVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANG 39
K VV++G G+ GLS AY + GH+V V+E ++ G
Sbjct: 34 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG 70
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
Length = 520
Score = 37.0 bits (84), Expect = 0.004
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 2 KKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANGTSF 42
K +VVV+GGGI G++ A +H G V V+E D G ++
Sbjct: 4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTY 44
>pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
Length = 478
Score = 37.0 bits (84), Expect = 0.004
Identities = 63/293 (21%), Positives = 117/293 (39%), Gaps = 58/293 (19%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANGTSFGNAGLISAFKKAPLSCPGVVL 63
+VV+IGGG G A +LG +EK GT N G I + KA L+ +
Sbjct: 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCL-NVGCIPS--KALLNNSHLFH 63
Query: 64 DTLKLMLKNQAPLKFHFGLNLKLYQWI-----------LKFVKSANAKSTHRTMALFERY 112
K + +N+ +Q ++ + N + ++ FE
Sbjct: 64 QMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDE 123
Query: 113 GWLSIDMYHQMLKDGMDFWYKEDGLLMIYTLEESFEKKL-----------KTCDNSGAYK 161
+ + DG++ KED +L + + + ++ K ++GA
Sbjct: 124 TKIRVTPV-----DGLEGTVKEDHILDVKNIIVATGSEVTPFPGIEIDEEKIVSSTGA-- 176
Query: 162 ILSAKETKEYMPVVNDNICG------------SVLLTE-----NAHVDPGEVMHSLQEYL 204
LS KE + + ++ I G V + E A +D GEV + Q++L
Sbjct: 177 -LSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMD-GEVAKATQKFL 234
Query: 205 QNVGVEFLYNEEVIDFEFKN--NLIEGVI-----THKEKIQAETIILATGANP 250
+ G++F + +VI + + N++E V+ +E ++AE +++A G P
Sbjct: 235 KKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRP 287
Score = 32.3 bits (72), Expect = 0.10
Identities = 14/30 (46%), Positives = 19/30 (62%)
Query: 3 KEVVVIGGGIVGLSCAYSMHKLGHKVCVIE 32
K + +IGGGI+GL +LG KV V+E
Sbjct: 184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVE 213
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 35.4 bits (80), Expect = 0.012
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANGTSF 42
+ +++G G+ G CA + KL KV VIEK + G ++
Sbjct: 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAY 41
>pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4E|A Chain A, Crystal Structure Of The Flavocytochrome C Fumarate
Reductase Of Shewanella Putrefaciens Strain Mr-1
Complexed With Fumarate
Length = 572
Score = 33.5 bits (75), Expect = 0.045
Identities = 20/58 (34%), Positives = 31/58 (52%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANGTSFGNAGLISAFKKAPLSCPGV 61
+VV+IG G GL+ A S G KV ++EK G + AG ++A + P + G+
Sbjct: 128 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGI 185
>pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|D Chain D, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|B Chain B, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|C Chain C, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
Length = 572
Score = 33.5 bits (75), Expect = 0.045
Identities = 20/58 (34%), Positives = 31/58 (52%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANGTSFGNAGLISAFKKAPLSCPGV 61
+VV+IG G GL+ A S G KV ++EK G + AG ++A + P + G+
Sbjct: 128 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGI 185
>pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9C|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9D|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9D|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
Length = 389
Score = 33.1 bits (74), Expect = 0.059
Identities = 90/425 (21%), Positives = 160/425 (37%), Gaps = 78/425 (18%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKND--GANGTSFGNAGLISAFKKAPLSCPGV 61
+V+V+G G +G++ Y + K G K +++ D NG+ G+ +I G
Sbjct: 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIR-------HAYGE 57
Query: 62 VLDTLKLMLKNQAPLKFHFGLNLKLYQWILKFVKSANAKSTHRTMALFERYGWLSIDMYH 121
+ + L L++Q +L+ + K TH +F + G L
Sbjct: 58 GREYVPLALRSQ-----------ELWYEL--------EKETHH--KIFTKTGVLV----- 91
Query: 122 QMLKDGMDFWYKEDGLLMIYTLEESFEKKLKTCDNSGAYKILSAKETKEYMPVVNDNICG 181
F K + + T+E + E L T D +L E + P +
Sbjct: 92 --------FGPKGESAFVAETMEAAKEHSL-TVD------LLEGDEINKRWPGITVPENY 136
Query: 182 SVLLTENAHVDPGE-VMHSLQEYLQNVGVEFLYNEEVIDFEFKNNLIEGVITHKEKIQAE 240
+ + N+ V E + + +E + G + L + V DF+ + ++ + T A+
Sbjct: 137 NAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVK-IETANGSYTAD 195
Query: 241 TIILATGA-NPTLIKKTKNDFLMMGAKGYSITFKMPEELKPKTSSLFADIFMAMTPRRDT 299
+I++ GA N L+ K D + + + F +E K F FM P
Sbjct: 196 KLIVSMGAWNSKLLSKLNLDIPLQPYR-QVVGFFESDESKYSNDIDFPG-FMVEVPNGIY 253
Query: 300 VRITS------KLELNTNNALIDKEQI-------ANMKKNLAAFTQPF------EMKDAI 340
S KL NT ID + I + NL AF + + E+K
Sbjct: 254 YGFPSFGGCGLKLGYNTFGQKIDPDTINREFGVYPEDESNLRAFLEEYMPGANGELKRGA 313
Query: 341 EWCGFRPLTPNDIPYLGYDKRYKNLIHATGLGWLGITFGPAIGKIIANLSQDGANEKNAD 400
+ L + I + + N++ A G G F +G++++ L+ G E D
Sbjct: 314 VCMYTKTLDEHFI--IDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTGKTEH--D 369
Query: 401 IMLFS 405
I +FS
Sbjct: 370 ISIFS 374
>pdb|1LVL| Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Complex With
Nicotinamide-Adenine-Dinucleotide (Nad+)
Length = 458
Score = 32.3 bits (72), Expect = 0.10
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 1 MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEKND 35
+ + +VV+GGG +GL + KLG +V V+E +
Sbjct: 170 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE 204
>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|B Chain B, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|C Chain C, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|D Chain D, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
Length = 470
Score = 32.0 bits (71), Expect = 0.13
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 2 KKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANGTSFGNAGLI 48
+ +VV+IGGG G A +LG K IEK GT N G I
Sbjct: 6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL-NVGCI 51
Score = 27.7 bits (60), Expect = 2.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 3 KEVVVIGGGIVGLSCAYSMHKLGHKVCVIE 32
K++VVIG G +GL ++G +V V+E
Sbjct: 178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVE 207
>pdb|1L9E|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9E|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9F|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|1L9F|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|1EL5|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Dimethylglycine
pdb|1EL5|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Dimethylglycine
pdb|1EL7|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methytelluro]acetate
pdb|1EL7|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methytelluro]acetate
pdb|1EL8|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylseleno]cetate
pdb|1EL8|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylseleno]cetate
Length = 389
Score = 31.2 bits (69), Expect = 0.22
Identities = 89/425 (20%), Positives = 160/425 (36%), Gaps = 78/425 (18%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKND--GANGTSFGNAGLISAFKKAPLSCPGV 61
+V+V+G G +G++ Y + K G K +++ D NG+ G+ +I G
Sbjct: 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIR-------HAYGE 57
Query: 62 VLDTLKLMLKNQAPLKFHFGLNLKLYQWILKFVKSANAKSTHRTMALFERYGWLSIDMYH 121
+ + L L++Q +L+ + K TH +F + G L
Sbjct: 58 GREYVPLALRSQ-----------ELWYEL--------EKETHH--KIFTKTGVLV----- 91
Query: 122 QMLKDGMDFWYKEDGLLMIYTLEESFEKKLKTCDNSGAYKILSAKETKEYMPVVNDNICG 181
F K + + T+E + E L T D +L E + P +
Sbjct: 92 --------FGPKGESAFVAETMEAAKEHSL-TVD------LLEGDEINKRWPGITVPENY 136
Query: 182 SVLLTENAHVDPGE-VMHSLQEYLQNVGVEFLYNEEVIDFEFKNNLIEGVITHKEKIQAE 240
+ + N+ V E + + +E + G + L + V DF+ + ++ + T A+
Sbjct: 137 NAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVK-IETANGSYTAD 195
Query: 241 TIILATGA-NPTLIKKTKNDFLMMGAKGYSITFKMPEELKPKTSSLFADIFMAMTPRRDT 299
+I++ GA N L+ K D + + + F +E K F FM P
Sbjct: 196 KLIVSMGAWNSKLLSKLNLDIPLQPYR-QVVGFFESDESKYSNDIDFPG-FMVEVPNGIY 253
Query: 300 VRITS------KLELNTNNALIDKEQI-------ANMKKNLAAFTQPF------EMKDAI 340
S KL +T ID + I + NL AF + + E+K
Sbjct: 254 YGFPSFGGCGLKLGYHTFGQKIDPDTINREFGVYPEDESNLRAFLEEYMPGANGELKRGA 313
Query: 341 EWCGFRPLTPNDIPYLGYDKRYKNLIHATGLGWLGITFGPAIGKIIANLSQDGANEKNAD 400
+ L + I + + N++ A G G F +G++++ L+ G E D
Sbjct: 314 VCMYTKTLDEHFI--IDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTGKTEH--D 369
Query: 401 IMLFS 405
I +FS
Sbjct: 370 ISIFS 374
>pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRX|B Chain B, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 30.8 bits (68), Expect = 0.29
Identities = 19/47 (40%), Positives = 25/47 (52%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANGTSFGNAGLISA 50
+VVV+G G G S A S G KV +IEK G + AG ++A
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNA 174
>pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavocytochrome C3
pdb|1M64|B Chain B, Crystal Structure Of Q363f Mutant Flavocytochrome C3
Length = 571
Score = 30.8 bits (68), Expect = 0.29
Identities = 19/47 (40%), Positives = 25/47 (52%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANGTSFGNAGLISA 50
+VVV+G G G S A S G KV +IEK G + AG ++A
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNA 174
>pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRY|B Chain B, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 30.8 bits (68), Expect = 0.29
Identities = 19/47 (40%), Positives = 25/47 (52%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANGTSFGNAGLISA 50
+VVV+G G G S A S G KV +IEK G + AG ++A
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNA 174
>pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 30.8 bits (68), Expect = 0.29
Identities = 19/47 (40%), Positives = 25/47 (52%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANGTSFGNAGLISA 50
+VVV+G G G S A S G KV +IEK G + AG ++A
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNA 174
>pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina
Length = 571
Score = 30.8 bits (68), Expect = 0.29
Identities = 19/47 (40%), Positives = 25/47 (52%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANGTSFGNAGLISA 50
+VVV+G G G S A S G KV +IEK G + AG ++A
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNA 174
>pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRZ|B Chain B, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 30.8 bits (68), Expect = 0.29
Identities = 19/47 (40%), Positives = 25/47 (52%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANGTSFGNAGLISA 50
+VVV+G G G S A S G KV +IEK G + AG ++A
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNA 174
>pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1KSU|B Chain B, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 30.8 bits (68), Expect = 0.29
Identities = 19/47 (40%), Positives = 25/47 (52%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANGTSFGNAGLISA 50
+VVV+G G G S A S G KV +IEK G + AG ++A
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNA 174
>pdb|1C0P|A Chain A, D-Amino Acic Oxidase In Complex With D-Alanine And A
Partially Occupied Biatomic Species
pdb|1C0K|A Chain A, Crystal Structure Analysis Of D-Amino Acid Oxidase In
Complex With L-Lactate
pdb|1C0L|A Chain A, D-Amino Acid Oxidase: Structure Of Substrate Complexes
At Very High Resolution Reveal The Chemical Reacttion
Mechanism Of Flavin Dehydrogenation
pdb|1C0I|A Chain A, Crystal Structure Of D-Amino Acid Oxidase In Complex
With Two Anthranylate Molecules
Length = 363
Score = 30.8 bits (68), Expect = 0.29
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 2 KKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEKN 34
+K VVV+G G++GLS A + + G+ V ++ ++
Sbjct: 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD 38
>pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina Histidine
365 Mutated To Alanine
Length = 571
Score = 30.8 bits (68), Expect = 0.29
Identities = 19/47 (40%), Positives = 25/47 (52%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANGTSFGNAGLISA 50
+VVV+G G G S A S G KV +IEK G + AG ++A
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNA 174
>pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
pdb|1LJ1|B Chain B, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
Length = 571
Score = 30.8 bits (68), Expect = 0.29
Identities = 19/47 (40%), Positives = 25/47 (52%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANGTSFGNAGLISA 50
+VVV+G G G S A S G KV +IEK G + AG ++A
Sbjct: 128 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNA 174
>pdb|1KNR|A Chain A, L-Aspartate Oxidase: R386l Mutant
pdb|1KNP|A Chain A, E. Coli L-Aspartate Oxidase: Mutant R386l In Complex
With Succinate
Length = 540
Score = 30.4 bits (67), Expect = 0.38
Identities = 22/63 (34%), Positives = 31/63 (48%), Gaps = 1/63 (1%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANGTSFGNAGLISAFKKAPLSCPGVVL 63
+V++IG G GLS A + H+V V+ K G++F G I+A S V
Sbjct: 10 DVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVE 68
Query: 64 DTL 66
DTL
Sbjct: 69 DTL 71
>pdb|1OJT| Structure Of Dihydrolipoamide Dehydrogenase
Length = 482
Score = 30.4 bits (67), Expect = 0.38
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDG 36
++++IGGGI+GL LG ++ V+E DG
Sbjct: 187 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG 219
Score = 29.6 bits (65), Expect = 0.65
Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 1/45 (2%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANGTSFGNAGLI 48
+VVV+GGG G S A++ G KV ++E+ G N G I
Sbjct: 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL-NVGCI 51
>pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Implications For The
Succinate Dehydrogenase FUMARATE REDUCATSE FAMILY
Length = 540
Score = 30.4 bits (67), Expect = 0.38
Identities = 22/63 (34%), Positives = 31/63 (48%), Gaps = 1/63 (1%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANGTSFGNAGLISAFKKAPLSCPGVVL 63
+V++IG G GLS A + H+V V+ K G++F G I+A S V
Sbjct: 10 DVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVE 68
Query: 64 DTL 66
DTL
Sbjct: 69 DTL 71
>pdb|1BHY| Low Temperature Middle Resolution Structure Of P64k From Masc Data
Length = 482
Score = 30.4 bits (67), Expect = 0.38
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDG 36
++++IGGGI+GL LG ++ V+E DG
Sbjct: 187 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG 219
Score = 29.6 bits (65), Expect = 0.65
Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 1/45 (2%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANGTSFGNAGLI 48
+VVV+GGG G S A++ G KV ++E+ G N G I
Sbjct: 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL-NVGCI 51
>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
Length = 566
Score = 30.4 bits (67), Expect = 0.38
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANGTSFGNAGLISAFKKAPLSCPGV 61
+V+V+G G G + + + K G V +++K + G S +AG ++A + GV
Sbjct: 123 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGV 180
>pdb|1JOA| Nadh Peroxidase With Cysteine-Sulfenic Acid
Length = 447
Score = 30.0 bits (66), Expect = 0.50
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 5 VVVIGGGIVGLSCAYSMHKLGHKVCVIE 32
VVVIG G +G+ A + K G KV VI+
Sbjct: 152 VVVIGSGYIGIEAAEAFAKAGKKVTVID 179
>pdb|1NHP| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Cys 42 Replaced
By Ala (C42a)
Length = 447
Score = 30.0 bits (66), Expect = 0.50
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 5 VVVIGGGIVGLSCAYSMHKLGHKVCVIE 32
VVVIG G +G+ A + K G KV VI+
Sbjct: 152 VVVIGSGYIGIEAAEAFAKAGKKVTVID 179
>pdb|1AN9|A Chain A, D-Amino Acid Oxidase Complex With O-Aminobenzoate
pdb|1AN9|B Chain B, D-Amino Acid Oxidase Complex With O-Aminobenzoate
pdb|1EVI|A Chain A, Three-Dimensional Structure Of The Purple Intermediate
Of Porcine Kidney D-Amino Acid Oxidase
pdb|1EVI|B Chain B, Three-Dimensional Structure Of The Purple Intermediate
Of Porcine Kidney D-Amino Acid Oxidase
Length = 340
Score = 30.0 bits (66), Expect = 0.50
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 5 VVVIGGGIVGLSCAYSMHKLGHKV 28
VVVIG G++GLS A +H+ H V
Sbjct: 3 VVVIGAGVIGLSTALCIHERYHSV 26
>pdb|1NHS| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Ser 41 Replaced
By Cys (S41c)
Length = 447
Score = 30.0 bits (66), Expect = 0.50
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 5 VVVIGGGIVGLSCAYSMHKLGHKVCVIE 32
VVVIG G +G+ A + K G KV VI+
Sbjct: 152 VVVIGSGYIGIEAAEAFAKAGKKVTVID 179
>pdb|1AA8|A Chain A, Porcine Kidney D-Amino Acid Oxidase
pdb|1AA8|B Chain B, Porcine Kidney D-Amino Acid Oxidase
pdb|1KIF|A Chain A, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|B Chain B, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|C Chain C, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|D Chain D, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|E Chain E, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|F Chain F, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|G Chain G, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|H Chain H, D-Amino Acid Oxidase From Pig Kidney
pdb|1DDO|A Chain A, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|B Chain B, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|C Chain C, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|D Chain D, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|E Chain E, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|F Chain F, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|G Chain G, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|H Chain H, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DAO|A Chain A, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|B Chain B, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|C Chain C, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|D Chain D, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|E Chain E, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|F Chain F, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|G Chain G, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|H Chain H, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
Length = 347
Score = 30.0 bits (66), Expect = 0.50
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 5 VVVIGGGIVGLSCAYSMHKLGHKV 28
VVVIG G++GLS A +H+ H V
Sbjct: 3 VVVIGAGVIGLSTALCIHERYHSV 26
>pdb|1NHQ| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Cys 42 Replaced
By Ser (C42s)
Length = 447
Score = 30.0 bits (66), Expect = 0.50
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 5 VVVIGGGIVGLSCAYSMHKLGHKVCVIE 32
VVVIG G +G+ A + K G KV VI+
Sbjct: 152 VVVIGSGYIGIEAAEAFAKAGKKVTVID 179
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 30.0 bits (66), Expect = 0.50
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 3 KEVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANGTSFGNAGLISAFKKAPLSCPGVV 62
K +VVIGGG +G+ + G KV ++E GA G ++A K L GV
Sbjct: 171 KSLVVIGGGYIGIELGTAYANFGTKVTILE---GAGEILSGFEKQMAAIIKKRLKKKGVE 227
Query: 63 LDT 65
+ T
Sbjct: 228 VVT 230
Score = 26.9 bits (58), Expect = 4.2
Identities = 12/35 (34%), Positives = 20/35 (56%)
Query: 1 MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEKND 35
++ E +V+G G G A +LG KV ++EK +
Sbjct: 2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36
>pdb|1NHR| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Leu 40 Replaced
By Cys (L40c)
Length = 447
Score = 30.0 bits (66), Expect = 0.50
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 5 VVVIGGGIVGLSCAYSMHKLGHKVCVIE 32
VVVIG G +G+ A + K G KV VI+
Sbjct: 152 VVVIGSGYIGIEAAEAFAKAGKKVTVID 179
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 30.0 bits (66), Expect = 0.50
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 5 VVVIGGGIVGLSCAYSMHKLGHKVCVIE 32
VVVIG G +G+ A + K G KV VI+
Sbjct: 152 VVVIGSGYIGIEAAEAFAKAGKKVTVID 179
>pdb|1NPX| Nadh Peroxidase (E.C.1.11.1.1) Non-Active Form With Cys 42
Oxidized To A Sulfonic Acid (Cys42-So3h)
pdb|2NPX| Nadh Peroxidase (E.C.1.11.1.1) With Cys 42 Oxidized To A Sulfonic
Acid (Cys42-So3h)
Length = 447
Score = 30.0 bits (66), Expect = 0.50
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 5 VVVIGGGIVGLSCAYSMHKLGHKVCVIE 32
VVVIG G +G+ A + K G KV VI+
Sbjct: 152 VVVIGSGYIGIEAAEAFAKAGKKVTVID 179
>pdb|3LAD|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4)
pdb|3LAD|B Chain B, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4)
Length = 476
Score = 29.6 bits (65), Expect = 0.65
Identities = 19/47 (40%), Positives = 24/47 (50%), Gaps = 1/47 (2%)
Query: 2 KKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANG-TSFGNAGL 47
K +V+VIG G G A +LG K +IEK G G T+ G L
Sbjct: 3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCL 49
Score = 26.2 bits (56), Expect = 7.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 7 VIGGGIVGLSCAYSMHKLGHKVCVIEKND 35
VIG G++GL +LG +V V+E D
Sbjct: 185 VIGAGVIGLELGSVWARLGAEVTVLEAMD 213
>pdb|1UOR| X-Ray Study Of Recombinant Human Serum Albumin. Phases Determined
By Molecular Replacement Method, Using Low Resolution
Structure Model Of Tetragonal Form Of Human Serum
Albumin
pdb|1AO6|A Chain A, Crystal Structure Of Human Serum Albumin
pdb|1AO6|B Chain B, Crystal Structure Of Human Serum Albumin
pdb|1BM0|A Chain A, Crystal Structure Of Human Serum Albumin
pdb|1BM0|B Chain B, Crystal Structure Of Human Serum Albumin
pdb|1H9Z|A Chain A, Human Serum Albumin Complexed With Myristic Acid And The
R-(+) Enantiomer Of Warfarin
pdb|1HA2|A Chain A, Human Serum Albumin Complexed With Myristic Acid And The
S- (-) Enantiomer Of Warfarin
pdb|1GNJ|A Chain A, Human Serum Albumin Complexed With
Cis-5,8,11,14-Eicosatetraenoic Acid (Arachidonic Acid)
pdb|1GNI|A Chain A, Human Serum Albumin Complexed With Cis-9-Octadecenoic Acid
(Oleic Acid)
pdb|1E7A|B Chain B, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Propofol
pdb|1E7A|A Chain A, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Propofol
pdb|1E7G|A Chain A, Human Serum Albumin Complexed With Tetradecanoic Acid
(Myristic Acid) Human Serum Albumin Complexed With
Myristic Acid
pdb|1E7C|A Chain A, Human Serum Albumin Complexed With Myristic Acid And The
General Anesthetic Halothane
pdb|1BJ5| Human Serum Albumin Complexed With Myristic Acid
pdb|1E7I|A Chain A, Human Serum Albumin Complexed With Octadecanoic Acid
(Stearic Acid)
pdb|1E7E|A Chain A, Human Serum Albumin Complexed With Decanoic Acid (Capric
Acid)
pdb|1E7H|A Chain A, Human Serum Albumin Complexed With Hexadecanoic Acid
(Palmitic Acid)
pdb|1E7F|A Chain A, Human Serum Albumin Complexed With Dodecanoic Acid (Lauric
Acid)
pdb|1E78|A Chain A, Crystal Structure Of Human Serum Albumin
pdb|1E7B|A Chain A, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Halothane
pdb|1E78|B Chain B, Crystal Structure Of Human Serum Albumin
pdb|1E7B|B Chain B, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Halothane
Length = 585
Score = 29.6 bits (65), Expect = 0.65
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 274 MPEELKPKTSSLFADIFMAMTPRRDTVRITSKLELNTNNALIDKEQIANMKKNLAAFTQP 333
+P+E +T + ADI R + T+ +EL + KEQ+ + + AAF +
Sbjct: 498 VPKEFNAETFTFHADICTLSEKERQIKKQTALVELVKHKPKATKEQLKAVMDDFAAFVEK 557
Query: 334 FEMKDAIEWC 343
D E C
Sbjct: 558 CCKADDKETC 567
>pdb|1BKE| Human Serum Albumin In A Complex With Myristic Acid And
Tri-Iodobenzoic Acid
Length = 581
Score = 29.6 bits (65), Expect = 0.65
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 274 MPEELKPKTSSLFADIFMAMTPRRDTVRITSKLELNTNNALIDKEQIANMKKNLAAFTQP 333
+P+E +T + ADI R + T+ +EL + KEQ+ + + AAF +
Sbjct: 495 VPKEFNAETFTFHADICTLSEKERQIKKQTALVELVKHKPKATKEQLKAVMDDFAAFVEK 554
Query: 334 FEMKDAIEWC 343
D E C
Sbjct: 555 CCKADDKETC 564
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 28.9 bits (63), Expect = 1.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 3 KEVVVIGGGIVGLSCAYSMHKLGHKVCVIEKND 35
K V VIGGG++G A GH V ++++ +
Sbjct: 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 48
>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|B Chain B, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|C Chain C, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
Length = 302
Score = 28.9 bits (63), Expect = 1.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 3 KEVVVIGGGIVGLSCAYSMHKLGHKVCVIEKND 35
K V VIGGG++G A GH V ++++ +
Sbjct: 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 48
>pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F14|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F17|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F14|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F12|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
Length = 310
Score = 28.9 bits (63), Expect = 1.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 3 KEVVVIGGGIVGLSCAYSMHKLGHKVCVIEKND 35
K V VIGGG++G A GH V ++++ +
Sbjct: 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 48
>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human
L-3- Hydroxyacyl-Coa Dehydrogenase
pdb|1IL0|B Chain B, X-Ray Crystal Structure Of The E170q Mutant Of Human
L-3- Hydroxyacyl-Coa Dehydrogenase
Length = 302
Score = 28.9 bits (63), Expect = 1.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 3 KEVVVIGGGIVGLSCAYSMHKLGHKVCVIEKND 35
K V VIGGG++G A GH V ++++ +
Sbjct: 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 48
>pdb|1ELI|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor Pyrrole-2-Carboxylate
pdb|1ELI|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor Pyrrole-2-Carboxylate
pdb|1EL9|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methylthio]acetate
pdb|1EL9|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methylthio]acetate
Length = 389
Score = 28.9 bits (63), Expect = 1.1
Identities = 14/47 (29%), Positives = 25/47 (52%), Gaps = 2/47 (4%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKND--GANGTSFGNAGLI 48
+V+V+G G G + Y + K G K +++ D NG+ G+ +I
Sbjct: 5 DVIVVGAGSXGXAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRII 51
>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
pdb|1F0Y|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
Length = 302
Score = 28.9 bits (63), Expect = 1.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 3 KEVVVIGGGIVGLSCAYSMHKLGHKVCVIEKND 35
K V VIGGG++G A GH V ++++ +
Sbjct: 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 48
>pdb|1LSU|A Chain A, Ktn Bsu222 Crystal Structure In Complex With Nadh
pdb|1LSU|B Chain B, Ktn Bsu222 Crystal Structure In Complex With Nadh
Length = 147
Score = 28.9 bits (63), Expect = 1.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 3 KEVVVIGGGIVGLSCAYSMHKLGHKVCVIEKND 35
K+ VIG G G S +H++GH+V ++ N+
Sbjct: 11 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 43
>pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon
Length = 775
Score = 28.9 bits (63), Expect = 1.1
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 112 YGWLSIDMYHQMLKDGMDFWYKEDGLLMIYTLEESFEKKLKTCDNSGAYKILSA------ 165
YG+ Y + + + W +E ++I LEE F K+ D G + +
Sbjct: 497 YGYAKARWYCKECAESVTAWGREYIEMVIRELEEKFGFKVLYADTDGLHATIPGADAETV 556
Query: 166 -KETKEYMPVVNDNICG 181
K+ KE++ +N + G
Sbjct: 557 KKKAKEFLKYINPKLPG 573
>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|2HDH|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 293
Score = 28.1 bits (61), Expect = 1.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 3 KEVVVIGGGIVGLSCAYSMHKLGHKVCVIEKND 35
K V VIGGG+ G A GH V ++++ +
Sbjct: 5 KHVTVIGGGLXGAGIAQVAAATGHTVVLVDQTE 37
>pdb|1LPF|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Complex
With Flavin-Adenine-Dinucleotide (Fad)
pdb|1LPF|B Chain B, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Complex
With Flavin-Adenine-Dinucleotide (Fad)
Length = 477
Score = 27.7 bits (60), Expect = 2.5
Identities = 17/38 (44%), Positives = 19/38 (49%)
Query: 2 KKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGANG 39
K +VVVIG G G A +LG K IEK G G
Sbjct: 3 KFDVVVIGAGPGGYVAAIRAAQLGLKTACIEKYIGKEG 40
Score = 27.3 bits (59), Expect = 3.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 3 KEVVVIGGGIVGLSCAYSMHKLGHKVCVIEKND 35
K++ VIG G++GL +LG +V V+E D
Sbjct: 181 KKLGVIGAGVIGLELGSVWARLGAEVTVLEALD 213
>pdb|1LSH|B Chain B, Lipid-Protein Interactions In Lipovitellin
Length = 319
Score = 27.3 bits (59), Expect = 3.2
Identities = 21/74 (28%), Positives = 35/74 (46%), Gaps = 4/74 (5%)
Query: 226 LIEGVITHKEKIQAETIILATGANPTLIKKTKNDFLMMGAKGYSITFKMPEELKPKTSSL 285
++E + + A + + G P+ +++ KN L GA I K+ E+ PK +
Sbjct: 130 MLEASTGNLQSHPAARVDIKWGRLPSSLQRAKNALLENGAP--VIASKLEMEIMPKANQK 187
Query: 286 F--ADIFMAMTPRR 297
+ I AMTPRR
Sbjct: 188 HQVSVILAAMTPRR 201
>pdb|1GRT| Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 26.9 bits (58), Expect = 4.2
Identities = 12/31 (38%), Positives = 19/31 (60%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKN 34
+ +VIGGG GL A+ +LG + V+E +
Sbjct: 22 DYLVIGGGSGGLESAWRAAELGARAAVVESH 52
>pdb|1KYQ|A Chain A, Met8p: A Bifunctional Nad-Dependent Dehydrogenase And
Ferrochelatase Involved In Siroheme Synthesis.
pdb|1KYQ|B Chain B, Met8p: A Bifunctional Nad-Dependent Dehydrogenase And
Ferrochelatase Involved In Siroheme Synthesis.
pdb|1KYQ|C Chain C, Met8p: A Bifunctional Nad-Dependent Dehydrogenase And
Ferrochelatase Involved In Siroheme Synthesis
Length = 274
Score = 26.9 bits (58), Expect = 4.2
Identities = 11/29 (37%), Positives = 19/29 (64%)
Query: 3 KEVVVIGGGIVGLSCAYSMHKLGHKVCVI 31
K +++IGGG VGL+ Y + G K+ ++
Sbjct: 14 KRILLIGGGEVGLTRLYKLXPTGCKLTLV 42
>pdb|5GRT| Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
pdb|3GRT| Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|2GRT| Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|4GRT| Human Glutathione Reductase A34e, R37w Mutant, Mixed Disulfide
Between Trypanothione And The Enzyme
Length = 461
Score = 26.9 bits (58), Expect = 4.2
Identities = 12/31 (38%), Positives = 19/31 (60%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKN 34
+ +VIGGG GL A+ +LG + V+E +
Sbjct: 5 DYLVIGGGSGGLESAWRAAELGARAAVVESH 35
>pdb|1PJC|A Chain A, L-Alanine Dehydrogenase Complexed With Nad
pdb|1SAY|A Chain A, L-Alanine Dehydrogenase Complexed With Pyruvate
pdb|1PJB|A Chain A, L-Alanine Dehydrogenase
Length = 361
Score = 26.6 bits (57), Expect = 5.5
Identities = 12/31 (38%), Positives = 19/31 (60%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKN 34
+VV++GGG+VG A LG +V + + N
Sbjct: 169 KVVILGGGVVGTEAAKMAVGLGAQVQIFDIN 199
>pdb|1PHH| p-Hydroxybenzoate Hydroxylase (PHBH) (E.C.1.14.13.2) - FAD -
3,4-Dihydroxybenzoate Ternary Complex
(PHBH.FAD.3,4-DiOHB Complex)
pdb|1PBE| P-Hydroxybenzoate Hydroxylase (Phbh) (E.C.1.14.13.2) Complexed
With P-Hydroxybenzoic Acid
pdb|1PDH| P-Hydroxybenzoate Hydroxylase (Phbh) (E.C.1.14.13.2)
Reconstituted With Arabino-Fad And Complexed With The
Substrate P-Hydroxybenzoic Acid
pdb|2PHH| p-Hydroxybenzoate Hydroxylase (PHBH) (E.C.1.14.13.2) -
Adenosine-5-Diphosphoribose - p-Hydroxybenzoate Ternary
Complex (PHBH-ADPR-POHB Complex)
Length = 394
Score = 26.6 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1 MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEK 33
MK +V +IG G GL +HK G ++E+
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 26.6 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1 MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEK 33
MK +V +IG G GL +HK G ++E+
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1DOB| P-Hydroxybenzoate Hydroxylase Mutant With Tyr 222 Replaced By
Phe (Y222f) Complexed With 4-Hydroxybenzoate
Length = 394
Score = 26.6 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1 MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEK 33
MK +V +IG G GL +HK G ++E+
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PBD| P-Hydroxybenzoate Hydroxylase (Phbh) (E.C.1.14.13.2) Mutant With
Cys 116 Replaced By Ser (C116s) Complexed With Fad And
4-Aminobenzoic Acid
pdb|1PBB| P-Hydroxybenzoate Hydroxylase (Phbh) (E.C.1.14.13.2) Mutant With
Cys 116 Replaced By Ser (C116s) Complexed With Fad And
2,4-Dihydroxybenzoic Acid
pdb|1PBC| P-Hydroxybenzoate Hydroxylase (Phbh) (E.C.1.14.13.2) Mutant With
Cys 116 Replaced By Ser (C116s) Complexed With Fad And
2-Hydroxy-4-Aminobenzoic Acid
Length = 394
Score = 26.6 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1 MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEK 33
MK +V +IG G GL +HK G ++E+
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1BKW|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys116
Replaced By Ser (C116s) And Arg44 Replaced By Lys
(R44k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 26.6 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1 MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEK 33
MK +V +IG G GL +HK G ++E+
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PBF| P-Hydroxybenzoate Hydroxylase (Phbh) (E.C.1.14.13.2) Mutant With
Cys 116 Replaced By Ser, Tyr 222 Replaced By Ala
(C116s,Y222a) Complexed With Fad And
2-Hydroxy-4-Aminobenzoic Acid
Length = 394
Score = 26.6 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1 MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEK 33
MK +V +IG G GL +HK G ++E+
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1BGJ| P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And His 162 Replaced By Arg
(H162r), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 26.6 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1 MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEK 33
MK +V +IG G GL +HK G ++E+
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 26.6 bits (57), Expect = 5.5
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 1 MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIE 32
MK+ +V+ G G G + A + K ++VC+++
Sbjct: 1 MKRVMVIGGDGYCGWATALHLSKKNYEVCIVD 32
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 26.6 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1 MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEK 33
MK +V +IG G GL +HK G ++E+
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1BF3| P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 26.6 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1 MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEK 33
MK +V +IG G GL +HK G ++E+
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-Ohb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P-Ohb
Length = 394
Score = 26.6 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1 MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEK 33
MK +V +IG G GL +HK G ++E+
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 26.6 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1 MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEK 33
MK +V +IG G GL +HK G ++E+
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 26.6 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1 MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEK 33
MK +V +IG G GL +HK G ++E+
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1BGN| P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 26.6 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1 MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEK 33
MK +V +IG G GL +HK G ++E+
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PXA| P-Hydroxybenzoate Hydroxylase (E.C.1.14.13.2) Mutant With Asn
300 Replaced By Asp (N300d)
Length = 394
Score = 26.6 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1 MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEK 33
MK +V +IG G GL +HK G ++E+
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PXC| P-Hydroxybenzoate Hydroxylase (E.C.1.14.13.2) Mutant With Tyr
385 Replaced By Phe (Y385f)
Length = 394
Score = 26.6 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1 MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEK 33
MK +V +IG G GL +HK G ++E+
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PXB| P-Hydroxybenzoate Hydroxylase (E.C.1.14.13.2) Mutant With Tyr
201 Replaced By Phe (Y201f)
Length = 394
Score = 26.6 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1 MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEK 33
MK +V +IG G GL +HK G ++E+
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1DOC| P-Hydroxybenzoate Hydroxylase Complexed With 4-Hdroxybenzoate
And Bromine
pdb|1IUT| P-Hydroxybenzoate Hydroxylase Complexed With 4-Aminobenzoate At
Ph 7.4
pdb|1IUU| P-Hydroxybenzoate Hydroxylase Complexed With 4-Aminobenzoate At
Ph 9.4
pdb|1IUW| P-Hydroxybenzoate Hydroxylase Complexed With 4-4-Hydroxybenzoate
At Ph 7.4
pdb|1IUX| P-Hydroxybenzoate Hydroxylase Complexed With 4-4-Hydroxybenzoate
At Ph 9.4
pdb|1DOD| P-Hydroxybenzoate Hydroxylase Complexed With
2,4-Dihydroxybenzoic Acid
pdb|1D7L|A Chain A, Structure-Function Correlations Of The Reaction Of
Reduced Nicotinamide Analogs With P-Hydroxybenzoate
Hydroxylase Substituted With A Series Of 8-Substituted
Flavins
pdb|1IUS| P-Hydroxybenzoate Hydroxylase Complexed With 4-Aminobenzoate At
Ph 5.0
pdb|1DOE| P-Hydroxybenzoate Hydroxylase Complexed With
2,4-Dihydroxybenzoic Acid And Bromine
pdb|1IUV| P-Hydroxybenzoate Hydroxylase Complexed With 4-4-Hydroxybenzoate
At Ph 5.0
Length = 394
Score = 26.6 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1 MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEK 33
MK +V +IG G GL +HK G ++E+
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 26.6 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1 MKKEVVVIGGGIVGLSCAYSMHKLGHKVCVIEK 33
MK +V +IG G GL +HK G ++E+
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
Length = 505
Score = 26.2 bits (56), Expect = 7.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 3 KEVVVIGGGIVGLSCAYSMHKLGHKVCVIEKNDGA 37
K VV G G VGL +H+ G K + ++DG+
Sbjct: 249 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGS 283
>pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
Length = 499
Score = 26.2 bits (56), Expect = 7.2
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIE-KNDGANGTSFGNAG 46
++++IGGG GL+ A K KV V++ GT++G G
Sbjct: 14 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGG 57
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
Length = 408
Score = 26.2 bits (56), Expect = 7.2
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 2 KKEVVVIGGGIVGLSCAYSMHKLGHKVCVIE 32
+ ++++GGG++GL A + G V ++E
Sbjct: 145 QSRLLIVGGGVIGLELAATARTAGVHVSLVE 175
>pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
Length = 1025
Score = 26.2 bits (56), Expect = 7.2
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHK-VCVIEKNDGANGTS 41
++ ++G G +SCA + +LG+ + + EK + G S
Sbjct: 189 KIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS 227
>pdb|1KRQ|A Chain A, Crystal Structure Analysis Of Campylobacter Jejuni
Ferritin
Length = 167
Score = 26.2 bits (56), Expect = 7.2
Identities = 21/82 (25%), Positives = 37/82 (44%), Gaps = 6/82 (7%)
Query: 155 DNSGAYKILSAKETKEYMPVVNDNICGSVLLTENAHVDPGEVMHSLQEYLQNVGV-EFLY 213
D +GA+ A E ++ + + L ++HV+ EV Q + + V E Y
Sbjct: 37 DGAGAFLFAHASEESDHAKKLI-----TYLNETDSHVELQEVKQPEQNFKSLLDVFEKTY 91
Query: 214 NEEVIDFEFKNNLIEGVITHKE 235
E + N L+E ++THK+
Sbjct: 92 EHEQFITKSINTLVEHMLTHKD 113
>pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
Length = 1025
Score = 26.2 bits (56), Expect = 7.2
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHK-VCVIEKNDGANGTS 41
++ ++G G +SCA + +LG+ + + EK + G S
Sbjct: 189 KIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS 227
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 25.8 bits (55), Expect = 9.4
Identities = 12/31 (38%), Positives = 19/31 (60%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKN 34
+ +VIGGG GL+ A +LG + V+E +
Sbjct: 5 DYLVIGGGSGGLASARRAAELGARAAVVESH 35
>pdb|3GRS| Glutathione Reductase (E.C.1.6.4.2), Oxidized Form (E)
pdb|1GRB| Glutathione Reductase (E.C.1.6.4.2) (Oxidized) Complex With Nadh
And Phosphate
pdb|1GRA| Glutathione Reductase (E.C.1.6.4.2) (Oxidized) Complex With
Glutathione Disulfide And Nadp+
pdb|1GRE| Glutathione Reductase (E.C.1.6.4.2) Complex With Covalently
Bound Glutathione And Phosphate
pdb|1GRF| Glutathione Reductase (E.C.1.6.4.2) Carboxymethylated At Cys 58
Complex With Phosphate
pdb|1GRG| Glutathione Reductase (E.C.1.6.4.2) Modified By Bcnu
(1,3-Bis(2-Chloroethyl)-1-Nitrosourea) At Cys 58
Complexed With Phosphate
pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|4GR1| Glutathione Reductase (E.C.1.6.4.2) Oxidized Form Complexed With
Retro-Gssg
pdb|1GRH| Glutathione Reductase (E.C.1.6.4.2) Modified By Hecnu
(1-(2-Chloroethyl)-3-(2-Hydroxyethyl)-1-Nitrosourea) At
Cys 58 Complexed With Phosphate
Length = 478
Score = 25.8 bits (55), Expect = 9.4
Identities = 12/31 (38%), Positives = 19/31 (60%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKN 34
+ +VIGGG GL+ A +LG + V+E +
Sbjct: 22 DYLVIGGGSGGLASARRAAELGARAAVVESH 52
>pdb|1GSN| Human Glutathione Reductase Modified By Dinitrosoglutathione
Length = 478
Score = 25.8 bits (55), Expect = 9.4
Identities = 12/31 (38%), Positives = 19/31 (60%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKN 34
+ +VIGGG GL+ A +LG + V+E +
Sbjct: 22 DYLVIGGGSGGLASARRAAELGARAAVVESH 52
>pdb|1DNC| Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 25.8 bits (55), Expect = 9.4
Identities = 12/31 (38%), Positives = 19/31 (60%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKN 34
+ +VIGGG GL+ A +LG + V+E +
Sbjct: 22 DYLVIGGGSGGLASARRAAELGARAAVVESH 52
>pdb|1XAN| Human Glutathione Reductase In Complex With A Xanthene Inhibitor
Length = 461
Score = 25.8 bits (55), Expect = 9.4
Identities = 12/31 (38%), Positives = 19/31 (60%)
Query: 4 EVVVIGGGIVGLSCAYSMHKLGHKVCVIEKN 34
+ +VIGGG GL+ A +LG + V+E +
Sbjct: 5 DYLVIGGGSGGLASARRAAELGARAAVVESH 35
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.137 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,454,743
Number of Sequences: 13198
Number of extensions: 104444
Number of successful extensions: 369
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 111
length of query: 410
length of database: 2,899,336
effective HSP length: 90
effective length of query: 320
effective length of database: 1,711,516
effective search space: 547685120
effective search space used: 547685120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)