BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645560|ref|NP_207736.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(125 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QD9|A Chain A, Bacillus Subtilis Yabj >gi|6573366|pdb|... 118 2e-28
pdb|1QU9|A Chain A, 1.2 A Crystal Structure Of Yjgf Gene Pr... 116 7e-28
pdb|1JD1|B Chain B, Crystal Structure Of Yeo7_yeast >gi|147... 77 4e-16
pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts >gi|11514... 28 0.24
pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed Wi... 28 0.24
pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp... 28 0.24
pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein E... 27 0.91
pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken >gi... 26 1.6
pdb|1C3M|A Chain A, Crystal Structure Of Heltuba Complexed ... 23 7.7
pdb|2HPR| Histidine-Containing Phosphocarrier Protein Hpr... 23 7.7
pdb|2HID| Refined Nmr Structure Of Phosphocarrier Histidi... 23 7.7
pdb|1JEM| Nmr Structure Of Histidine Phosphorylated Form ... 23 7.7
>pdb|1QD9|A Chain A, Bacillus Subtilis Yabj
pdb|1QD9|B Chain B, Bacillus Subtilis Yabj
pdb|1QD9|C Chain C, Bacillus Subtilis Yabj
Length = 124
Score = 118 bits (295), Expect = 2e-28
Identities = 59/122 (48%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 3 EVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQTTQSMENIKAIL 62
+ +H+ AP AIGPYSQ I N++ + SGQ+ + S GE DI QT Q N+KA+L
Sbjct: 2 KAVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTPS-GEMVNGDIKEQTHQVFSNLKAVL 60
Query: 63 KEAGLGMDSVVKTTILLKSLDDFAVVNGIYGSYFTEPYPARATFQVAKLPKDALVEIEAI 122
+EAG ++VVK T+ + ++ FA VN +YG YF PAR+ +VA+LPKDALVEIE I
Sbjct: 61 EEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEVI 120
Query: 123 AI 124
A+
Sbjct: 121 AL 122
>pdb|1QU9|A Chain A, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
pdb|1QU9|B Chain B, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
pdb|1QU9|C Chain C, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
Length = 128
Score = 116 bits (291), Expect = 7e-28
Identities = 58/128 (45%), Positives = 88/128 (68%), Gaps = 4/128 (3%)
Query: 1 MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQTTQSMENIKA 60
M + I + AP AIGPY Q + +++ SGQ+ ++ TGE AD+ +Q QS++N+KA
Sbjct: 1 MSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVP-ADVAAQARQSLDNVKA 59
Query: 61 ILKEAGLGMDSVVKTTILLKSLDDFAVVNGIYGSYFTE---PYPARATFQVAKLPKDALV 117
I++ AGL + +VKTT+ +K L+DFA VN Y ++FTE +PAR+ +VA+LPKD +
Sbjct: 60 IVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSXVEVARLPKDVKI 119
Query: 118 EIEAIAIK 125
EIEAIA++
Sbjct: 120 EIEAIAVR 127
>pdb|1JD1|B Chain B, Crystal Structure Of Yeo7_yeast
pdb|1JD1|C Chain C, Crystal Structure Of Yeo7_yeast
pdb|1JD1|A Chain A, Crystal Structure Of Yeo7_yeast
pdb|1JD1|F Chain F, Crystal Structure Of Yeo7_yeast
pdb|1JD1|D Chain D, Crystal Structure Of Yeo7_yeast
pdb|1JD1|E Chain E, Crystal Structure Of Yeo7_yeast
Length = 129
Score = 77.4 bits (189), Expect = 4e-16
Identities = 43/114 (37%), Positives = 64/114 (55%), Gaps = 1/114 (0%)
Query: 10 APKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQTTQSMENIKAILKEAGLGM 69
AP A YS A+ N+L+F+SGQ+ + +G+ I + Q ++NIK +L+ + +
Sbjct: 13 APAAAASYSHAMKVNNLIFLSGQIPVTPDNKLVEGS-IADKAEQVIQNIKNVLEASNSSL 71
Query: 70 DSVVKTTILLKSLDDFAVVNGIYGSYFTEPYPARATFQVAKLPKDALVEIEAIA 123
D VVK I L ++ FA N +Y YF PAR+ VA LP +E+EAIA
Sbjct: 72 DRVVKVNIFLADINHFAEFNSVYAKYFNTHKPARSCVAVAALPLGVDMEMEAIA 125
>pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts
pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts
Length = 649
Score = 28.5 bits (62), Expect = 0.24
Identities = 19/48 (39%), Positives = 27/48 (55%), Gaps = 4/48 (8%)
Query: 4 VIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQT 51
++ +L P+ Y AIAT D G +DVSTGEFKG + S++
Sbjct: 5 LLQESLLPREAN-YLAAIATGD---GWGLAFLDVSTGEFKGTVLKSKS 48
>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
pdb|1EWQ|B Chain B, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
Length = 765
Score = 28.5 bits (62), Expect = 0.24
Identities = 19/48 (39%), Positives = 27/48 (55%), Gaps = 4/48 (8%)
Query: 4 VIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQT 51
++ +L P+ Y AIAT D G +DVSTGEFKG + S++
Sbjct: 121 LLQESLLPREAN-YLAAIATGD---GWGLAFLDVSTGEFKGTVLKSKS 164
>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
pdb|1FW6|B Chain B, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
Length = 768
Score = 28.5 bits (62), Expect = 0.24
Identities = 19/48 (39%), Positives = 27/48 (55%), Gaps = 4/48 (8%)
Query: 4 VIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQT 51
++ +L P+ Y AIAT D G +DVSTGEFKG + S++
Sbjct: 121 LLQESLLPREAN-YLAAIATGD---GWGLAFLDVSTGEFKGTVLKSKS 164
>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
Length = 582
Score = 26.6 bits (57), Expect = 0.91
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 25 DLVFVSGQLGIDVSTGEFK 43
D ++ SGQ+G+D S+GE K
Sbjct: 286 DSLYTSGQVGVDPSSGEVK 304
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken
pdb|2BCC|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
Length = 422
Score = 25.8 bits (55), Expect = 1.6
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 26 LVFVSGQLGIDVSTGEFKGADIHSQTTQSMENIKAILKEAGLG 68
L+ + G LG+ + +++G +I Q S+ + + + A +G
Sbjct: 206 LLNIRGGLGLSGAKAKYRGGEIREQNGDSLVHAAIVAESAAIG 248
>pdb|1C3M|A Chain A, Crystal Structure Of Heltuba Complexed To Man(1-3)man
pdb|1C3N|A Chain A, Crystal Structure Of Helianthus Tuberosus Lectin Complexed
To Man(1-2)man
pdb|1C3K|A Chain A, Crystal Structure Of Helianthus Tuberosus Lectin
Length = 147
Score = 23.5 bits (49), Expect = 7.7
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 76 TILLKSLDDFAVVNGIYGSYFTEPYPARATFQVAK 110
TI +D ++G +G+Y+ TFQ K
Sbjct: 70 TITFAEDEDITAISGTFGAYYHMTVVTSLTFQTNK 104
>pdb|2HPR| Histidine-Containing Phosphocarrier Protein Hpr Mutant With Met
51 Replaced By Val And Ser 83 Replaced By Cys (M51v,
S83c)
Length = 87
Score = 23.5 bits (49), Expect = 7.7
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 37 VSTGEFKGADIHSQTTQSMENIKAILKEAGLGMDSVVKTTILLKSLDDFAVVNGI 91
V T AD++ + N+K+I+ LG+ + TI D+ +N +
Sbjct: 22 VQTASKYDADVNLEYNGKTVNLKSIMGVVSLGIAKGAEITISASGADENDALNAL 76
>pdb|2HID| Refined Nmr Structure Of Phosphocarrier Histidine Containing
Protein From Bacillus Subtilis
Length = 87
Score = 23.5 bits (49), Expect = 7.7
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 37 VSTGEFKGADIHSQTTQSMENIKAILKEAGLGMDSVVKTTILLKSLDDFAVVNGI 91
V T AD++ + N+K+I+ LG+ + TI D+ +N +
Sbjct: 22 VQTASKYDADVNLEYNGKTVNLKSIMGVVSLGIAKGAEITISASGADENDALNAL 76
>pdb|1JEM| Nmr Structure Of Histidine Phosphorylated Form Of The
Phosphocarrier Histidine Containing Protein From
Bacillus Subtilis, Nmr, 25 Structures
Length = 87
Score = 23.5 bits (49), Expect = 7.7
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 37 VSTGEFKGADIHSQTTQSMENIKAILKEAGLGMDSVVKTTILLKSLDDFAVVNGI 91
V T AD++ + N+K+I+ LG+ + TI D+ +N +
Sbjct: 22 VQTASKYDADVNLEYNGKTVNLKSIMGVVSLGIAKGAEITISASGADENDALNAL 76
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.133 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 653,133
Number of Sequences: 13198
Number of extensions: 24053
Number of successful extensions: 100
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 12
length of query: 125
length of database: 2,899,336
effective HSP length: 77
effective length of query: 48
effective length of database: 1,883,090
effective search space: 90388320
effective search space used: 90388320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)