BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645561|ref|NP_207737.1| hypothetical protein
[Helicobacter pylori 26695]
(98 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1M11|R Chain R, Structural Model Of Human Decay-Acceler... 24 2.3
pdb|1ECE|A Chain A, Acidothermus Cellulolyticus Endocellula... 23 6.7
pdb|1C0D|A Chain A, Endocellulase E1 From Acidothermus Cell... 23 6.7
pdb|1G1C|A Chain A, I1 Domain From Titin >gi|16975306|pdb|1... 23 6.7
pdb|1CGM|E Chain E, Cucumber Green Mottle Mosaic Virus (Cgm... 22 8.8
pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution O... 22 8.8
pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Pol... 22 8.8
>pdb|1M11|R Chain R, Structural Model Of Human Decay-Accelerating Factor
Bound To Echovirus 7 From Cryo-Electron Microscopy
Length = 243
Score = 24.3 bits (51), Expect = 2.3
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 48 ARPSLEYCASFPETGIVTI-----VIRVPVGEEDAQPLIK 82
A+P+LE SFPE ++T +++P GE+D+ +K
Sbjct: 11 AQPALEGRTSFPEDTVITYKCEESFVKIP-GEKDSVICLK 49
>pdb|1ECE|A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
pdb|1ECE|B Chain B, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
Length = 358
Score = 22.7 bits (47), Expect = 6.7
Identities = 14/37 (37%), Positives = 18/37 (47%), Gaps = 2/37 (5%)
Query: 22 VTPPLLAAFST--EQLPAATRLKTLQQLARPSLEYCA 56
+ P L F T + T LKTL Q RP+ +Y A
Sbjct: 275 IAPVWLGEFGTTLQSTTDQTWLKTLVQYLRPTAQYGA 311
>pdb|1C0D|A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
pdb|1C0D|B Chain B, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
Length = 358
Score = 22.7 bits (47), Expect = 6.7
Identities = 14/37 (37%), Positives = 18/37 (47%), Gaps = 2/37 (5%)
Query: 22 VTPPLLAAFST--EQLPAATRLKTLQQLARPSLEYCA 56
+ P L F T + T LKTL Q RP+ +Y A
Sbjct: 275 IAPVWLGEFGTTLQSTTDQTWLKTLVQYLRPTAQYGA 311
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 22.7 bits (47), Expect = 6.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 58 FPETGIVTIVIRVPVGEEDAQPLIK 82
+PE + +VIR GE+ A ++K
Sbjct: 56 WPEDNVCELVIRDVTGEDSASIMVK 80
>pdb|1CGM|E Chain E, Cucumber Green Mottle Mosaic Virus (Cgmmv), Watermelon
Strain (Fiber Diffraction)
Length = 161
Score = 22.3 bits (46), Expect = 8.8
Identities = 18/59 (30%), Positives = 22/59 (36%), Gaps = 9/59 (15%)
Query: 22 VTPPLLAAFSTEQLPAATRLKTL---------QQLARPSLEYCASFPETGIVTIVIRVP 71
+TP L AFS +P T L L Q R S S + +V I R P
Sbjct: 6 ITPSKLIAFSASYVPVRTLLNFLVASQGTAFQTQAGRDSFRESLSALPSSVVDINSRFP 64
>pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|B Chain B, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|C Chain C, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
Length = 656
Score = 22.3 bits (46), Expect = 8.8
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 30 FSTEQLPAATRLKTLQQLARPSLEYCA--SFPETGIVTIVIRV 70
F+T + AT+L Q + EYC F + G + + IR+
Sbjct: 367 FATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRL 409
>pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|B Chain B, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|C Chain C, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|D Chain D, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|E Chain E, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|F Chain F, Copper Amine Oxidase From Hansenula Polymorpha
Length = 655
Score = 22.3 bits (46), Expect = 8.8
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 30 FSTEQLPAATRLKTLQQLARPSLEYCA--SFPETGIVTIVIRV 70
F+T + AT+L Q + EYC F + G + + IR+
Sbjct: 366 FATSLVTRATKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRL 408
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.136 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,166
Number of Sequences: 13198
Number of extensions: 15181
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 7
length of query: 98
length of database: 2,899,336
effective HSP length: 74
effective length of query: 24
effective length of database: 1,922,684
effective search space: 46144416
effective search space used: 46144416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)