BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645563|ref|NP_207739.1| hypothetical protein
[Helicobacter pylori 26695]
(120 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BHE| Polygalacturonase From Erwinia Carotovora Ssp. ... 25 3.1
pdb|1DBZ|B Chain B, C153s Mutant Of Pea Fructose-1,6-Bispho... 24 5.3
pdb|1SPI|A Chain A, Fructose-1,6-Bisphosphatase (D-Fructose... 24 5.3
pdb|1DCU|A Chain A, Redox Signaling In The Chloroplast: Str... 24 5.3
>pdb|1BHE| Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 24.6 bits (52), Expect = 3.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 81 TKNYEKAVNGCQKYFHIKLPEGAPSNFKSG 110
T +KA+N C + ++L G+ S F SG
Sbjct: 26 TSTIQKALNNCDQGKAVRLSAGSTSVFLSG 55
>pdb|1DBZ|B Chain B, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|C Chain C, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|A Chain A, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|D Chain D, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
Length = 357
Score = 23.9 bits (50), Expect = 5.3
Identities = 22/87 (25%), Positives = 35/87 (39%), Gaps = 10/87 (11%)
Query: 34 TFYKRAFAFTMKSLFGENLLLFVKLKHSALTSKHMKGPLENRHHHSFTKNYEKAVNGCQK 93
T K F FT+ L+GE FV LT ++++ P + + NY+ +K
Sbjct: 201 TIGKGVFVFTLDPLYGE----FV------LTQENLQIPKSGKIYSFNEGNYKLWDENLKK 250
Query: 94 YFHIKLPEGAPSNFKSGSYMATMVVRF 120
Y G S Y+ ++V F
Sbjct: 251 YIDDLKEPGPSGKPYSARYIGSLVGDF 277
>pdb|1SPI|A Chain A, Fructose-1,6-Bisphosphatase (D-Fructose-1,6-Bisphosphate
1-Phosphohydrolase) (E.C.3.1.3.11)
pdb|1SPI|D Chain D, Fructose-1,6-Bisphosphatase (D-Fructose-1,6-Bisphosphate
1-Phosphohydrolase) (E.C.3.1.3.11)
pdb|1SPI|B Chain B, Fructose-1,6-Bisphosphatase (D-Fructose-1,6-Bisphosphate
1-Phosphohydrolase) (E.C.3.1.3.11)
pdb|1SPI|C Chain C, Fructose-1,6-Bisphosphatase (D-Fructose-1,6-Bisphosphate
1-Phosphohydrolase) (E.C.3.1.3.11)
Length = 358
Score = 23.9 bits (50), Expect = 5.3
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 34 TFYKRAFAFTMKSLFGENLLLFVKLKHSALTSKHMKGPLENRHHHSFTKNYEKAVNGCQK 93
T K +AFT+ ++GE FV LTS+ ++ P + + NY+ + +K
Sbjct: 202 TIGKGVYAFTLDPMYGE----FV------LTSEKIQIPKAGKIYSFNEGNYKMWPDKLKK 251
Query: 94 YFHIKLPEGAPSNFKSGSYMATMVVRF 120
Y G S Y+ ++V F
Sbjct: 252 YMDDLKEPGESQKPYSSRYIGSLVGDF 278
>pdb|1DCU|A Chain A, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1D9Q|B Chain B, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1DCU|C Chain C, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1D9Q|C Chain C, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1D9Q|A Chain A, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1DCU|D Chain D, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1DCU|B Chain B, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1D9Q|D Chain D, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
Length = 357
Score = 23.9 bits (50), Expect = 5.3
Identities = 22/87 (25%), Positives = 35/87 (39%), Gaps = 10/87 (11%)
Query: 34 TFYKRAFAFTMKSLFGENLLLFVKLKHSALTSKHMKGPLENRHHHSFTKNYEKAVNGCQK 93
T K F FT+ L+GE FV LT ++++ P + + NY+ +K
Sbjct: 201 TIGKGVFVFTLDPLYGE----FV------LTQENLQIPKSGKIYSFNEGNYKLWDENLKK 250
Query: 94 YFHIKLPEGAPSNFKSGSYMATMVVRF 120
Y G S Y+ ++V F
Sbjct: 251 YIDDLKEPGPSGKPYSARYIGSLVGDF 277
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.136 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 668,534
Number of Sequences: 13198
Number of extensions: 24352
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 4
length of query: 120
length of database: 2,899,336
effective HSP length: 77
effective length of query: 43
effective length of database: 1,883,090
effective search space: 80972870
effective search space used: 80972870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)