BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645564|ref|NP_207740.1| hypothetical protein
[Helicobacter pylori 26695]
(337 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1CF2|O Chain O, Three-Dimensional Structure Of D-Glycer... 29 0.66
pdb|1AB4| 59kda Fragment Of Gyrase A From E. Coli 27 3.3
pdb|1DBZ|B Chain B, C153s Mutant Of Pea Fructose-1,6-Bispho... 26 5.6
pdb|1IXM|B Chain B, Crystal Structure Of Spoob From Bacillu... 26 5.6
pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesy... 26 5.6
pdb|1DCU|A Chain A, Redox Signaling In The Chloroplast: Str... 26 5.6
pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Trans... 26 5.6
pdb|1KZO|A Chain A, Protein Farnesyltransferase Complexed W... 26 5.6
pdb|1F51|B Chain B, A Transient Interaction Between Two Pho... 26 5.6
pdb|1CMZ|A Chain A, Solution Structure Of Gaip (Galpha Inte... 26 7.4
pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crysta... 26 7.4
pdb|1SPI|A Chain A, Fructose-1,6-Bisphosphatase (D-Fructose... 26 7.4
pdb|1AGR|E Chain E, Complex Of Alf4-Activated Gi-Alpha-1 Wi... 26 7.4
pdb|1LD7|A Chain A, Co-Crystal Structure Of Human Farnesylt... 25 9.6
>pdb|1CF2|O Chain O, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|P Chain P, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|Q Chain Q, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|R Chain R, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
Length = 337
Score = 29.3 bits (64), Expect = 0.66
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 236 TDTLKISELCKKVGYDKNDYLKLAQKAQKFLVPDQWFQFFEILSQEDDKAQKAFLFVLLE 295
T T +I E K++G +ND ++ + V D + + + QE D + V
Sbjct: 256 TSTAEIMEYAKELGRSRNDLFEIPVWRESITVVDNEIYYMQAVHQESDIVPENVDAVRAI 315
Query: 296 LEMND 300
LEM +
Sbjct: 316 LEMEE 320
>pdb|1AB4| 59kda Fragment Of Gyrase A From E. Coli
Length = 477
Score = 26.9 bits (58), Expect = 3.3
Identities = 15/64 (23%), Positives = 34/64 (52%)
Query: 157 EHAYFSKRLKAFIHNDLKNAFEVLTNAQIPLELRRYAFIEIAQKGNKKEVLKALNAMQEN 216
E AY + R K +I + E + +IP ++ + IE + K++ ++ ++A+++
Sbjct: 201 EEAYRTGRGKVYIRARAEVEVETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDE 260
Query: 217 LDKE 220
DK+
Sbjct: 261 SDKD 264
>pdb|1DBZ|B Chain B, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|C Chain C, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|A Chain A, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|D Chain D, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
Length = 357
Score = 26.2 bits (56), Expect = 5.6
Identities = 11/31 (35%), Positives = 18/31 (57%)
Query: 9 FLFIVGFGVFVYSIDPQAYAFNLGSYSFNLP 39
F+ +G GVFV+++DP F L + +P
Sbjct: 198 FVLTIGKGVFVFTLDPLYGEFVLTQENLQIP 228
>pdb|1IXM|B Chain B, Crystal Structure Of Spoob From Bacillus Subtilis
pdb|1IXM|A Chain A, Crystal Structure Of Spoob From Bacillus Subtilis
Length = 192
Score = 26.2 bits (56), Expect = 5.6
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 17/108 (15%)
Query: 236 TDTLKISELCKKVGYDKNDYLKLAQKAQKFLVPDQWFQFFEILSQEDDKAQKAFLFVLLE 295
+DT +EL +G+ ++D++ Q + L ++ + FE++ + A+ E
Sbjct: 13 SDTALTNELIHLLGHSRHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVIDAKH-------E 65
Query: 296 LEMNDLAKEHLA--VLSFE--------EYMLLNAYMDLKQEHKKAYKL 333
++++L HLA L+F EY +L DL +K KL
Sbjct: 66 SKLSNLKTPHLAFDFLTFNWKTHYMTLEYEVLGEIKDLSAYDQKLAKL 113
>pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
Length = 315
Score = 26.2 bits (56), Expect = 5.6
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 272 FQFFEILSQEDDKAQKAFLFVLLELEMNDLAKEHLAVLSFEEYMLLNAYMDLKQE 326
+ +F + Q D+++++AF +E+N + V F +L + DL++E
Sbjct: 46 YDYFRAVLQRDERSERAFKLTRDAIELN---AANYTVWHFRRVLLRSLQKDLQEE 97
>pdb|1DCU|A Chain A, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1D9Q|B Chain B, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1DCU|C Chain C, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1D9Q|C Chain C, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1D9Q|A Chain A, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1DCU|D Chain D, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1DCU|B Chain B, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1D9Q|D Chain D, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
Length = 357
Score = 26.2 bits (56), Expect = 5.6
Identities = 11/31 (35%), Positives = 18/31 (57%)
Query: 9 FLFIVGFGVFVYSIDPQAYAFNLGSYSFNLP 39
F+ +G GVFV+++DP F L + +P
Sbjct: 198 FVLTIGKGVFVFTLDPLYGEFVLTQENLQIP 228
>pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid
Length = 333
Score = 26.2 bits (56), Expect = 5.6
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 272 FQFFEILSQEDDKAQKAFLFVLLELEMNDLAKEHLAVLSFEEYMLLNAYMDLKQE 326
+ +F + Q D+++++AF +E+N + V F +L + DL++E
Sbjct: 56 YDYFRAVLQRDERSERAFKLTRDAIELN---AANYTVWHFRRVLLRSLQKDLQEE 107
>pdb|1KZO|A Chain A, Protein Farnesyltransferase Complexed With Farnesylated K-
Ras4b Peptide Product And Farnesyl Diphosphate Substrate
Bound Simultaneously
pdb|1KZP|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
K- Ras4b Peptide Product
pdb|1D8D|A Chain A, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1JCR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1D8E|A Chain A, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1FPP|A Chain A, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1FT1|A Chain A, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
Length = 377
Score = 26.2 bits (56), Expect = 5.6
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 272 FQFFEILSQEDDKAQKAFLFVLLELEMNDLAKEHLAVLSFEEYMLLNAYMDLKQE 326
+ +F + Q D+++++AF +E+N + V F +L + DL++E
Sbjct: 100 YDYFRAVLQRDERSERAFKLTRDAIELN---AANYTVWHFRRVLLRSLQKDLQEE 151
>pdb|1F51|B Chain B, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|A Chain A, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|D Chain D, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|C Chain C, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 182
Score = 26.2 bits (56), Expect = 5.6
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 17/108 (15%)
Query: 236 TDTLKISELCKKVGYDKNDYLKLAQKAQKFLVPDQWFQFFEILSQEDDKAQKAFLFVLLE 295
+DT +EL +G+ ++D++ Q + L ++ + FE++ + A+ E
Sbjct: 3 SDTALTNELIHLLGHSRHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVIDAKH-------E 55
Query: 296 LEMNDLAKEHLA--VLSFE--------EYMLLNAYMDLKQEHKKAYKL 333
++++L HLA L+F EY +L DL +K KL
Sbjct: 56 SKLSNLKTPHLAFDFLTFNWKTHYMTLEYEVLGEIKDLSAYDQKLAKL 103
>pdb|1CMZ|A Chain A, Solution Structure Of Gaip (Galpha Interacting Protein): A
Regulator Of G Protein Signaling
Length = 152
Score = 25.8 bits (55), Expect = 7.4
Identities = 21/74 (28%), Positives = 38/74 (50%), Gaps = 8/74 (10%)
Query: 75 RDFDKLLKQILSQDTQKTFLKTKFKSDLAKNLSQILARYDLKADLNTPNSGCEKVDNLFK 134
+ FDKL+ + + FL+T++ + N+ LA +LKA+ N + EK +++
Sbjct: 22 QSFDKLMHSPAGRSVFRAFLRTEYSEE---NMLFWLACEELKAEAN-QHVVDEKARLIYE 77
Query: 135 HYHNIENNTLEPKD 148
Y +I L PK+
Sbjct: 78 DYVSI----LSPKE 87
>pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crystal Structure
Length = 681
Score = 25.8 bits (55), Expect = 7.4
Identities = 16/80 (20%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 203 KKEVLKALNAMQENLDKECVKSFLKAFFEKSLNTDTLKISELCKKVGYDKNDYLKLAQKA 262
+++V + + +QE D E +K + + EKS+ ++ K+ G +++++ K+
Sbjct: 116 REDVFQRIVHLQETCDLEKIKPEARRYLEKSI--------KMGKRNGLHLSEHIRNEIKS 167
Query: 263 QKFLVPDQWFQFFEILSQED 282
K + + F + L+++D
Sbjct: 168 MKKRMSELCIDFNKNLNEDD 187
>pdb|1SPI|A Chain A, Fructose-1,6-Bisphosphatase (D-Fructose-1,6-Bisphosphate
1-Phosphohydrolase) (E.C.3.1.3.11)
pdb|1SPI|D Chain D, Fructose-1,6-Bisphosphatase (D-Fructose-1,6-Bisphosphate
1-Phosphohydrolase) (E.C.3.1.3.11)
pdb|1SPI|B Chain B, Fructose-1,6-Bisphosphatase (D-Fructose-1,6-Bisphosphate
1-Phosphohydrolase) (E.C.3.1.3.11)
pdb|1SPI|C Chain C, Fructose-1,6-Bisphosphatase (D-Fructose-1,6-Bisphosphate
1-Phosphohydrolase) (E.C.3.1.3.11)
Length = 358
Score = 25.8 bits (55), Expect = 7.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 9 FLFIVGFGVFVYSIDPQAYAFNLGSYSFNLPIA 41
F+ +G GV+ +++DP F L S +P A
Sbjct: 199 FVLTIGKGVYAFTLDPMYGEFVLTSEKIQIPKA 231
>pdb|1AGR|E Chain E, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|H Chain H, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
Length = 205
Score = 25.8 bits (55), Expect = 7.4
Identities = 16/66 (24%), Positives = 35/66 (52%), Gaps = 1/66 (1%)
Query: 199 QKGNKKEVLKALNAMQENLDKECVKSFLKAFFEKSLNTDTLKISELCKKVGYDKNDYLKL 258
Q+ +++EV K +++ ++ EC + KAF + + + + C++ K+ KL
Sbjct: 49 QRVSQEEVKKWAESLENLINHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSP-SKL 107
Query: 259 AQKAQK 264
+ KA+K
Sbjct: 108 SPKAKK 113
>pdb|1LD7|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
Length = 382
Score = 25.4 bits (54), Expect = 9.6
Identities = 13/55 (23%), Positives = 27/55 (48%), Gaps = 3/55 (5%)
Query: 272 FQFFEILSQEDDKAQKAFLFVLLELEMNDLAKEHLAVLSFEEYMLLNAYMDLKQE 326
+ +F + Q D+++++AF +E+N + V F +L + DL +E
Sbjct: 100 YDYFRAVLQRDERSERAFKLTRDAIELN---AANYTVWHFRRVLLKSLQKDLHEE 151
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.324 0.139 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,839,018
Number of Sequences: 13198
Number of extensions: 72678
Number of successful extensions: 279
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 14
length of query: 337
length of database: 2,899,336
effective HSP length: 89
effective length of query: 248
effective length of database: 1,724,714
effective search space: 427729072
effective search space used: 427729072
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)