BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645567|ref|NP_207743.1| hypothetical protein
[Helicobacter pylori 26695]
         (205 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1AVO|B  Chain B, Proteasome Activator Reg(Alpha) >gi|278...    25  4.9
pdb|1BO1|A  Chain A, Phosphatidylinositol Phosphate Kinase T...    25  6.4

>pdb|1AVO|B Chain B, Proteasome Activator Reg(Alpha)
 pdb|1AVO|D Chain D, Proteasome Activator Reg(Alpha)
 pdb|1AVO|F Chain F, Proteasome Activator Reg(Alpha)
 pdb|1AVO|H Chain H, Proteasome Activator Reg(Alpha)
 pdb|1AVO|J Chain J, Proteasome Activator Reg(Alpha)
 pdb|1AVO|L Chain L, Proteasome Activator Reg(Alpha)
 pdb|1AVO|N Chain N, Proteasome Activator Reg(Alpha)
          Length = 140

 Score = 25.4 bits (54), Expect = 4.9
 Identities = 13/29 (44%), Positives = 14/29 (47%)

Query: 88  LFRHLEGVHSLDSVYFDTLDDGANKLAKQ 116
           L   LEG H+  S YF    D   K AKQ
Sbjct: 61  LHTKLEGFHTQISKYFSERGDAVTKAAKQ 89



>pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase Type Ii Beta
 pdb|1BO1|B Chain B, Phosphatidylinositol Phosphate Kinase Type Ii Beta
          Length = 416

 Score = 25.0 bits (53), Expect = 6.4
 Identities = 22/76 (28%), Positives = 35/76 (45%), Gaps = 15/76 (19%)

Query: 24  KNQLKTLYRFYGKRHSVLNVGRKIDFEEENDDKFLPKLRNILHLGYIWEREMERLFFWQR 83
           K + K L  F  K +  LN G+K+   EE+   FL KL+          R++E   F  +
Sbjct: 229 KEKAKDLPTF--KDNDFLNEGQKLHVGEESKKNFLEKLK----------RDVE---FLAQ 273

Query: 84  FCALLFRHLEGVHSLD 99
              + +  L G+H +D
Sbjct: 274 LKIMDYSLLVGIHDVD 289



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.326    0.141    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,098,501
Number of Sequences: 13198
Number of extensions: 41922
Number of successful extensions: 95
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 2
length of query: 205
length of database: 2,899,336
effective HSP length: 84
effective length of query: 121
effective length of database: 1,790,704
effective search space: 216675184
effective search space used: 216675184
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)