BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645568|ref|NP_207744.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
         (218 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1KNV|B  Chain B, Bse634i Restriction Endonuclease >gi|20...    30  0.22
pdb|1DOS|A  Chain A, Structure Of Fructose-Bisphosphate Aldo...    27  1.4
pdb|1B57|A  Chain A, Class Ii Fructose-1,6-Bisphosphate Aldo...    27  1.4
pdb|3ULL|A  Chain A, Human Mitochondrial Single-Stranded Dna...    27  2.4
pdb|1QLS|A  Chain A, S100c (S100a11),Or Calgizzarin, In Comp...    25  9.1

>pdb|1KNV|B Chain B, Bse634i Restriction Endonuclease
 pdb|1KNV|A Chain A, Bse634i Restriction Endonuclease
          Length = 293

 Score = 30.0 bits (66), Expect = 0.22
 Identities = 28/91 (30%), Positives = 44/91 (47%), Gaps = 5/91 (5%)

Query: 33  DCIELKGENTEQARIYLKTLFNSNIVELDDHQKSANALIERLKSLDLKIAVAESCSGGLL 92
           +C+E   EN +  +I +K  FN+ ++EL  HQ    ++ E L  L+  +       G  +
Sbjct: 9   NCVEEYKENGK-TKIRIKP-FNA-LIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAI 65

Query: 93  --SHAFTSISGASAVFMGGIVCYNEEVKREL 121
             S AF++  G     M  I  +N  VKREL
Sbjct: 66  PTSGAFSNTRGTWFEVMIAIQSWNYRVKREL 96



>pdb|1DOS|A Chain A, Structure Of Fructose-Bisphosphate Aldolase
 pdb|1DOS|B Chain B, Structure Of Fructose-Bisphosphate Aldolase
          Length = 358

 Score = 27.3 bits (59), Expect = 1.4
 Identities = 16/62 (25%), Positives = 30/62 (47%), Gaps = 5/62 (8%)

Query: 50  KTLFNSNIVELDDHQKSANALI-----ERLKSLDLKIAVAESCSGGLLSHAFTSISGASA 104
           K LF+S++++L +     N  I     ER+  + + + +   C+GG       S   ASA
Sbjct: 135 KPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASA 194

Query: 105 VF 106
           ++
Sbjct: 195 LY 196



>pdb|1B57|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase In Complex
           With Phosphoglycolohydroxamate
 pdb|1B57|B Chain B, Class Ii Fructose-1,6-Bisphosphate Aldolase In Complex
           With Phosphoglycolohydroxamate
 pdb|1ZEN|   Class Ii Fructose-1,6-Bisphosphate Aldolase
          Length = 358

 Score = 27.3 bits (59), Expect = 1.4
 Identities = 16/62 (25%), Positives = 30/62 (47%), Gaps = 5/62 (8%)

Query: 50  KTLFNSNIVELDDHQKSANALI-----ERLKSLDLKIAVAESCSGGLLSHAFTSISGASA 104
           K LF+S++++L +     N  I     ER+  + + + +   C+GG       S   ASA
Sbjct: 135 KPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASA 194

Query: 105 VF 106
           ++
Sbjct: 195 LY 196



>pdb|3ULL|A Chain A, Human Mitochondrial Single-Stranded Dna Binding Protein
 pdb|3ULL|B Chain B, Human Mitochondrial Single-Stranded Dna Binding Protein
          Length = 132

 Score = 26.6 bits (57), Expect = 2.4
 Identities = 25/122 (20%), Positives = 62/122 (50%), Gaps = 20/122 (16%)

Query: 15  ILIEKELKRLNILAQVKEDCI--ELKGENTEQARIYLKTLFNSNIVELDDHQKSANALIE 72
           +++E+ L R+++L +V +D +  +++G+N         T+F+   +  ++  +S ++ + 
Sbjct: 8   LVLERSLNRVHLLGRVGQDPVLRQVEGKNPV-------TIFS---LATNEMWRSGDSEVY 57

Query: 73  RLKSLDLK-----IAVAESCSGGLLSHAFTSISGASAVFMGGIVCYNEEVKRELLKVNAT 127
           +L  +  K     I+V      GL   A+  +   S +++ G + Y E + +  ++  AT
Sbjct: 58  QLGDVSQKTTWHRISVFRP---GLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQAT 114

Query: 128 TL 129
           T+
Sbjct: 115 TI 116



>pdb|1QLS|A Chain A, S100c (S100a11),Or Calgizzarin, In Complex With Annexin I
           N-Terminus
          Length = 99

 Score = 24.6 bits (52), Expect = 9.1
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 11/80 (13%)

Query: 39  GENTEQARIYLKTLFNSNIVELDDHQKSANALIERLKSLDLKIAVAESCSGGLLSHAFTS 98
           G NT+ ++       N+ +     +QK    L   +K LDL         G L    F +
Sbjct: 27  GNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDL------DSDGQLDFQEFLN 80

Query: 99  ISGASAVFMGGIVCYNEEVK 118
           + G  A     I C++  +K
Sbjct: 81  LIGGLA-----IACHDSFIK 95



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.319    0.136    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,110,558
Number of Sequences: 13198
Number of extensions: 42354
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 5
length of query: 218
length of database: 2,899,336
effective HSP length: 85
effective length of query: 133
effective length of database: 1,777,506
effective search space: 236408298
effective search space used: 236408298
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)