BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645569|ref|NP_207745.1| hypothetical protein
[Helicobacter pylori 26695]
(188 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hyd... 27 1.9
pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase C... 27 1.9
pdb|2GAC|B Chain B, T152c Mutant Glycosylasparaginase From ... 25 4.3
pdb|9GAC|A Chain A, Precursor Of The T152c Mutant Glycosyla... 25 4.3
pdb|1AYY|D Chain D, Glycosylasparaginase >gi|3212475|pdb|1A... 25 4.3
pdb|9GAA|A Chain A, Precursor Of The T152a Mutant Glycosyla... 25 4.3
pdb|9GAF|C Chain C, Precursor Of The W11f Mutant Glycosylas... 25 4.3
pdb|1JQK|A Chain A, Crystal Structure Of Carbon Monoxide De... 24 9.5
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 26.6 bits (57), Expect = 1.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 91 EIMMKYKKRFMEQFHESEQTTTNISYAIYNYLATKIQVSN 130
EI + + K ++E+F TT + +Y+Y K+ V N
Sbjct: 402 EIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLN 441
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin
Length = 611
Score = 26.6 bits (57), Expect = 1.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 91 EIMMKYKKRFMEQFHESEQTTTNISYAIYNYLATKIQVSN 130
EI + + K ++E+F TT + +Y+Y K+ V N
Sbjct: 402 EIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLN 441
>pdb|2GAC|B Chain B, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAC|D Chain D, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
Length = 144
Score = 25.4 bits (54), Expect = 4.3
Identities = 10/35 (28%), Positives = 21/35 (59%)
Query: 151 IEQIKRYLKASVENLNDNEIAYIAKVAQKEFGSVC 185
+E+I + + +NL D ++ +IA + E+G+ C
Sbjct: 85 VERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYC 119
>pdb|9GAC|A Chain A, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAC|C Chain C, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 25.4 bits (54), Expect = 4.3
Identities = 10/35 (28%), Positives = 21/35 (59%)
Query: 151 IEQIKRYLKASVENLNDNEIAYIAKVAQKEFGSVC 185
+E+I + + +NL D ++ +IA + E+G+ C
Sbjct: 236 VERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYC 270
>pdb|1AYY|D Chain D, Glycosylasparaginase
pdb|1AYY|B Chain B, Glycosylasparaginase
pdb|2GAW|B Chain B, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|D Chain D, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
Length = 144
Score = 25.4 bits (54), Expect = 4.3
Identities = 10/35 (28%), Positives = 21/35 (59%)
Query: 151 IEQIKRYLKASVENLNDNEIAYIAKVAQKEFGSVC 185
+E+I + + +NL D ++ +IA + E+G+ C
Sbjct: 85 VERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYC 119
>pdb|9GAA|A Chain A, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAA|C Chain C, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 25.4 bits (54), Expect = 4.3
Identities = 10/35 (28%), Positives = 21/35 (59%)
Query: 151 IEQIKRYLKASVENLNDNEIAYIAKVAQKEFGSVC 185
+E+I + + +NL D ++ +IA + E+G+ C
Sbjct: 236 VERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYC 270
>pdb|9GAF|C Chain C, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAF|A Chain A, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 25.4 bits (54), Expect = 4.3
Identities = 10/35 (28%), Positives = 21/35 (59%)
Query: 151 IEQIKRYLKASVENLNDNEIAYIAKVAQKEFGSVC 185
+E+I + + +NL D ++ +IA + E+G+ C
Sbjct: 236 VERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYC 270
>pdb|1JQK|A Chain A, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
pdb|1JQK|B Chain B, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
pdb|1JQK|C Chain C, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
pdb|1JQK|D Chain D, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
pdb|1JQK|E Chain E, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
pdb|1JQK|F Chain F, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
Length = 639
Score = 24.3 bits (51), Expect = 9.5
Identities = 15/47 (31%), Positives = 20/47 (41%)
Query: 65 IPVNNKYLGIEQATLNAKLSLIVVFHEIMMKYKKRFMEQFHESEQTT 111
+P+ YL E L L +VV + +M R E FH TT
Sbjct: 311 VPLATNYLSQELPILTGALEAMVVDVQCIMPSLPRIAECFHTQIITT 357
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.133 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 876,454
Number of Sequences: 13198
Number of extensions: 30586
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 8
length of query: 188
length of database: 2,899,336
effective HSP length: 83
effective length of query: 105
effective length of database: 1,803,902
effective search space: 189409710
effective search space used: 189409710
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)