BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645572|ref|NP_207748.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(242 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybr... 30 0.33
pdb|1AYX| Crystal Structure Of Glucoamylase From Saccharo... 28 0.73
pdb|1M6H|A Chain A, Human Glutathione-Dependent Formaldehyd... 27 2.1
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring ... 27 2.8
pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee... 26 4.7
pdb|1FJG|C Chain C, Structure Of The Thermus Thermophilus 3... 25 6.2
pdb|1I94|C Chain C, Crystal Structures Of The Small Ribosom... 25 6.2
pdb|1CB8|A Chain A, Chondroitinase Ac Lyase From Flavobacte... 25 8.1
pdb|1HM2|A Chain A, Active Site Of Chondroitinase Ac Lyase ... 25 8.1
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 29.6 bits (65), Expect = 0.33
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 112 KAKKAFKDRAVKKEYLALTQGIIEEER---EINAPILTFKTTKAFSKISKKGQEA 163
K K+ + A+KK YLALT+ ++E E AP L + + + G+EA
Sbjct: 60 KFKRICEKTAIKKRYLALTEDYLQENPTMCEFMAPSLNARQDLVVTGVPMLGKEA 114
>pdb|1AYX| Crystal Structure Of Glucoamylase From Saccharomycopsis Fibuligera
At 1.7 Angstroms
Length = 492
Score = 28.5 bits (62), Expect = 0.73
Identities = 12/29 (41%), Positives = 18/29 (61%)
Query: 45 NTHFSVQKVEKPSVIFEDENILALFKPPF 73
NT +++Q+ PS F+DEN L +P F
Sbjct: 100 NTSYNLQRTSNPSGSFDDENHKGLGEPKF 128
>pdb|1M6H|A Chain A, Human Glutathione-Dependent Formaldehyde Dehydrogenase
pdb|1M6H|B Chain B, Human Glutathione-Dependent Formaldehyde Dehydrogenase
pdb|1M6W|A Chain A, Binary Complex Of Human Glutathione-Dependent Formaldehyde
Dehydrogenase And 12-Hydroxydodecanoic Acid
pdb|1M6W|B Chain B, Binary Complex Of Human Glutathione-Dependent Formaldehyde
Dehydrogenase And 12-Hydroxydodecanoic Acid
pdb|1MA0|A Chain A, Ternary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase With Nad+ And Dodecanoic Acid
pdb|1MA0|B Chain B, Ternary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase With Nad+ And Dodecanoic Acid
pdb|1MP0|A Chain A, Binary Complex Of Human Glutathione-Dependent Formaldehyde
Dehydrogenase With Nad(H)
pdb|1MP0|B Chain B, Binary Complex Of Human Glutathione-Dependent Formaldehyde
Dehydrogenase With Nad(H)
pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A
Glutathione-Dependent Formaldehyde Dehydrogenase)
pdb|1TEH|B Chain B, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A
Glutathione-Dependent Formaldehyde Dehydrogenase)
Length = 373
Score = 26.9 bits (58), Expect = 2.1
Identities = 16/43 (37%), Positives = 22/43 (50%)
Query: 144 ILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTG 186
IL + T FS+ + +V I PL ++K LL GI TG
Sbjct: 136 ILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTG 178
>pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
Length = 154
Score = 26.6 bits (57), Expect = 2.8
Identities = 24/85 (28%), Positives = 35/85 (40%), Gaps = 18/85 (21%)
Query: 102 LVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER----------EINAPI------- 144
L+KE E K F++ V + L QG+I + EIN P
Sbjct: 7 LMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPP 66
Query: 145 -LTFKTTKAFSKISKKGQEAVTIIT 168
+TFKT I +KGQ + +I+
Sbjct: 67 KITFKTKIYHPNIDEKGQVCLPVIS 91
>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed
With Nicotinamide Adenine Dinucleotide (Nad), And Zinc
pdb|1CDO|B Chain B, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed
With Nicotinamide Adenine Dinucleotide (Nad), And Zinc
Length = 374
Score = 25.8 bits (55), Expect = 4.7
Identities = 15/43 (34%), Positives = 21/43 (47%)
Query: 144 ILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTG 186
+L F T FS+ + Q AV I P ++ LL G+ TG
Sbjct: 138 VLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTG 180
>pdb|1FJG|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin And Paromomycin
pdb|1J5E|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1IBL|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1HR0|C Chain C, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1HNZ|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1IBM|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
pdb|1IBK|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
pdb|1HNW|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1JGQ|F Chain F, The Path Of Messenger Rna Through The Ribosome. This File,
1jgq, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1GIX|F Chain F, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1JGO|F Chain F, The Path Of Messenger Rna Through The Ribosome. This File,
1jgo, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGP|F Chain F, The Path Of Messenger Rna Through The Ribosome. This File,
1jgp, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
Length = 239
Score = 25.4 bits (54), Expect = 6.2
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 27 LVSIGGKKLMVARKELP----KNTHFSVQKVEKPSV 58
++ GG+++ V R+EL KN +VQ+V+ P++
Sbjct: 76 VIGRGGERIRVLREELAKLTGKNVALNVQEVQNPNL 111
>pdb|1I94|C Chain C, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1I96|C Chain C, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|C Chain C, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
pdb|1I95|C Chain C, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
Length = 238
Score = 25.4 bits (54), Expect = 6.2
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 27 LVSIGGKKLMVARKELP----KNTHFSVQKVEKPSV 58
++ GG+++ V R+EL KN +VQ+V+ P++
Sbjct: 75 VIGRGGERIRVLREELAKLTGKNVALNVQEVQNPNL 110
>pdb|1CB8|A Chain A, Chondroitinase Ac Lyase From Flavobacterium Heparinum
Length = 678
Score = 25.0 bits (53), Expect = 8.1
Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 120 RAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISK--KGQEAVTIITPLKIINKKT 177
+AV + L + Q I +++ + +T K + + K G++ + PL+
Sbjct: 588 QAVYHQQLDMVQAIFYTAGKLSVAGIEIETDKPCAVLIKHINGKQVIWAADPLQKEKTAV 647
Query: 178 LLKVGIKTGRTHQIRV 193
L +KTG+T+++++
Sbjct: 648 LSIRDLKTGKTNRVKI 663
>pdb|1HM2|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
pdb|1HMU|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
pdb|1HM3|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
pdb|1HMW|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
Length = 700
Score = 25.0 bits (53), Expect = 8.1
Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 120 RAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISK--KGQEAVTIITPLKIINKKT 177
+AV + L + Q I +++ + +T K + + K G++ + PL+
Sbjct: 610 QAVYHQQLDMVQAIFYTAGKLSVAGIEIETDKPCAVLIKHINGKQVIWAADPLQKEKTAV 669
Query: 178 LLKVGIKTGRTHQIRV 193
L +KTG+T+++++
Sbjct: 670 LSIRDLKTGKTNRVKI 685
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.136 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,279,061
Number of Sequences: 13198
Number of extensions: 49196
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 9
length of query: 242
length of database: 2,899,336
effective HSP length: 86
effective length of query: 156
effective length of database: 1,764,308
effective search space: 275232048
effective search space used: 275232048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)