BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645574|ref|NP_207750.1| hypothetical protein
[Helicobacter pylori 26695]
(254 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 45 6e-06
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 45 1e-05
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 45 1e-05
pdb|1CII| Colicin Ia 41 2e-04
pdb|1QSD|A Chain A, Rbl2p, Beta-Tubulin Binding Post-Chaper... 37 0.002
pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolip... 34 0.019
pdb|1HA0|A Chain A, Hemagglutinin Precursor Ha0 33 0.032
pdb|1HTM|D Chain D, Hemagglutinin Ectodomain (Soluble Fragm... 33 0.032
pdb|2VIU|B Chain B, Influenza Virus Hemagglutinin >gi|49411... 33 0.032
pdb|1F1M|A Chain A, Crystal Structure Of Outer Surface Prot... 32 0.071
pdb|1QU1|F Chain F, Crystal Structure Of Eha2 (23-185) >gi|... 32 0.093
pdb|5HMG|B Chain B, Hemagglutinin (D112(B)G) (Bromelain Dig... 32 0.093
pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 31 0.12
pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomeras... 31 0.12
pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 31 0.12
pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyr... 31 0.16
pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2... 31 0.16
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 30 0.21
pdb|1JOC|B Chain B, Eea1 Homodimer Of C-Terminal Fyve Domai... 30 0.21
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botuli... 30 0.21
pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus ... 30 0.21
pdb|1ENV|A Chain A, Atomic Structure Of The Ectodomain From... 30 0.27
pdb|1BG1|A Chain A, Three-Dimensional Structure Of The Stat... 30 0.27
pdb|1G5Z|A Chain A, Crystal Structure Of Lyme Disease Antig... 30 0.35
pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococc... 29 0.46
pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recy... 29 0.60
pdb|1H88|B Chain B, Crystal Structure Of Ternary Protein-Dn... 28 0.79
pdb|1GK4|A Chain A, Human Vimentin Coil 2b Fragment (Cys2) ... 28 0.79
pdb|1HJB|D Chain D, Crystal Structure Of Runx-1AML1CBFALPHA... 28 0.79
pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer 28 1.0
pdb|1IYR|A Chain A, Nmr Structure Ensamble Of Dff-C Domain 28 1.0
pdb|1BZH|A Chain A, Cyclic Peptide Inhibitor Of Human Ptp1b 27 1.8
pdb|1I57|A Chain A, Crystal Structure Of Apo Human Ptp1b (C... 27 1.8
pdb|1EEN|A Chain A, Crystal Structure Of Protein Tyrosine P... 27 1.8
pdb|1A5Y| Protein Tyrosine Phosphatase 1b Cysteinyl-Phosp... 27 1.8
pdb|1KAK|A Chain A, Human Tyrosine Phosphatase 1b Complexed... 27 1.8
pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Pe... 27 1.8
pdb|1BZC|A Chain A, Human Ptp1b Catalytic Domain Complexed ... 27 1.8
pdb|1AAX| Crystal Structure Of Protein Tyrosine Phosphata... 27 1.8
pdb|1BZJ|A Chain A, Human Ptp1b Complexed With Tpicooh 27 1.8
pdb|2HNQ| Protein-Tyrosine Phosphatase 1b (Human) (E.C.3.... 27 1.8
pdb|1G1H|A Chain A, Crystal Structure Of Protein Tyrosine P... 27 1.8
pdb|1IC2|A Chain A, Deciphering The Design Of The Tropomyos... 27 2.3
pdb|1D7M|A Chain A, Coiled-Coil Dimerization Domain From Co... 27 2.3
pdb|1MJH|B Chain B, Structure-Based Assignment Of The Bioch... 27 3.0
pdb|1DD5|A Chain A, Crystal Structure Of Thermotoga Maritim... 27 3.0
pdb|1LQ7|A Chain A, De Novo Designed Protein Model Of Radic... 26 3.9
pdb|1PTV|A Chain A, Crystal Structure Of Protein Tyrosine P... 26 3.9
pdb|1C83|A Chain A, Crystal Structure Of Protein Tyrosine P... 26 3.9
pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal Complex... 26 3.9
pdb|1GFY|A Chain A, Residue 259 Is A Key Determinant Of Sub... 26 3.9
pdb|1C86|A Chain A, Crystal Structure Of Protein Tyrosine P... 26 3.9
pdb|1L8G|A Chain A, Crystal Structure Of Ptp1b Complexed Wi... 26 3.9
pdb|1PTU|A Chain A, Crystal Structure Of Protein Tyrosine P... 26 3.9
pdb|1H89|A Chain A, Crystal Structure Of Ternary Protein-Dn... 26 5.1
pdb|1HX1|B Chain B, Crystal Structure Of A Bag Domain In Co... 25 6.7
pdb|2SPC|A Chain A, Spectrin (One Repeat Unit) >gi|576412|p... 25 6.7
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 25 6.7
pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1S... 25 6.7
pdb|1M6N|A Chain A, Crystal Structure Of The Seca Transloca... 25 6.7
pdb|1BR0|A Chain A, Three Dimensional Structure Of The N-Te... 25 6.7
pdb|1EZ3|A Chain A, Crystal Structure Of The Neuronal T-Sna... 25 6.7
pdb|1L8D|A Chain A, Rad50 Coiled-Coil Zn Hook >gi|23200318|... 25 6.7
pdb|1CI6|B Chain B, Transcription Factor Atf4-CEBP BETA BZI... 25 8.7
pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinosit... 25 8.7
pdb|1HE8|A Chain A, Ras G12v - Pi 3-Kinase Gamma Complex 25 8.7
pdb|1FGJ|A Chain A, X-Ray Structure Of Hydroxylamine Oxidor... 25 8.7
pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidas... 25 8.7
pdb|1EK8|A Chain A, Crystal Structure Of The Ribosome Recyc... 25 8.7
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 45.4 bits (106), Expect = 6e-06
Identities = 46/179 (25%), Positives = 86/179 (47%), Gaps = 21/179 (11%)
Query: 6 KQLIEISH-----LDKEIDSLEPLIREKRK------DLDKALNDKEAKNKAILNLEEEKL 54
++L EI H +++E + + L EK+K DL++ L ++EA + L+ EK+
Sbjct: 923 QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQ---KLQLEKV 979
Query: 55 ALKLQVSKNEQTL---QDTNTKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANRE- 110
++ K E + +D N K+ +K + E S+ +L EE+ AK + N+
Sbjct: 980 TADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTT-NLAEEEEKAKNLTKLKNKHE 1038
Query: 111 --IENLQNEIKHKSEKQEDLKKEMLELEKLVQQLESLVENEVKNIKETQQIIFKKKEEL 167
I L+ +K + + +++L+K +LE L + I E + + KK+EEL
Sbjct: 1039 SMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEEL 1097
Score = 41.2 bits (95), Expect = 1e-04
Identities = 42/199 (21%), Positives = 99/199 (49%), Gaps = 16/199 (8%)
Query: 8 LIEISHLDKEIDSLEPLI---REKRKDLDKALNDKEAKNKAIL---NLEEEKLALKLQVS 61
L++++ ++E+ + + + +E+++ + L + E K+ + NL +EKL + ++
Sbjct: 849 LLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908
Query: 62 KNEQTLQDTNTKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKHK 121
+ ++ ++A+ ++++ EI E E R IEE+ +ERS Q E + +Q ++
Sbjct: 909 AEAEEMR---VRLAAKKQELEEILHEMEAR---IEEE--EERSQQLQAEKKKMQQQMLDL 960
Query: 122 SEK--QEDLKKEMLELEKLVQQLESLVENEVKNIKETQQIIFKKKEELVEKTEPKIYSFY 179
E+ +E+ ++ L+LEK+ + + I E Q K+ +L+E+ + +
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNL 1020
Query: 180 ERIRRWAKNTSIVTIKKQA 198
AKN + + K ++
Sbjct: 1021 AEEEEKAKNLTKLKNKHES 1039
Score = 40.8 bits (94), Expect = 2e-04
Identities = 35/147 (23%), Positives = 71/147 (47%), Gaps = 26/147 (17%)
Query: 24 LIREKRKDLDKALNDKEAKNKAILNLEEEKLA----LKLQVSKNEQTLQ----------- 68
L+ E+ DL L ++E K K + L+ + + L++++ K E++ Q
Sbjct: 1008 LLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067
Query: 69 ---DTNTKIASIQKKMSEIKSERELRSLNIEEDIAK-----ERSNQANREIENLQNEIKH 120
D + +IA +Q +++E+K++ + ++ +A+ + N A ++I L++ H
Sbjct: 1068 ESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELES---H 1124
Query: 121 KSEKQEDLKKEMLELEKLVQQLESLVE 147
S+ QEDL+ E K +Q L E
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLSE 1151
Score = 37.4 bits (85), Expect = 0.002
Identities = 39/183 (21%), Positives = 83/183 (45%), Gaps = 21/183 (11%)
Query: 6 KQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKA--ILNLEEEKLALKLQVSKN 63
K+ ++ LD E E ++ L+K D + K IL +E++ L +
Sbjct: 950 KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL 1009
Query: 64 EQTLQDTNTKIASIQKKMSEI-KSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKS 122
E+ + D T +A ++K + K + + S+ E ++ ++ ++ +E+E ++ +++ +S
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES 1069
Query: 123 ---------------EKQEDLKKEMLELEKLVQQLE---SLVENEVKNIKETQQIIFKKK 164
E + L K+ EL+ + +LE S N +K I+E + I +
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129
Query: 165 EEL 167
E+L
Sbjct: 1130 EDL 1132
Score = 26.9 bits (58), Expect = 2.3
Identities = 23/61 (37%), Positives = 35/61 (56%), Gaps = 9/61 (14%)
Query: 16 KEIDSLEPLIREKRKDLDKALNDKEAKNKAIL---NLEEEKLALKLQVSKNEQTLQDTNT 72
K+I LE I + ++DL+ ++K A+NKA +L EE ALK ++ E TL T T
Sbjct: 1116 KKIRELESHISDLQEDLE---SEKAARNKAEKQKRDLSEELEALKTEL---EDTLDTTAT 1169
Query: 73 K 73
+
Sbjct: 1170 Q 1170
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 44.7 bits (104), Expect = 1e-05
Identities = 43/187 (22%), Positives = 90/187 (47%), Gaps = 30/187 (16%)
Query: 5 LKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKL------ 58
+K+ +++ LDKE L R ++ + DK + +K LE+E ++L+
Sbjct: 4 IKKKMQMLKLDKE----NALDRAEQAEADKKAAEDRSKQ-----LEDELVSLQKKLKGTE 54
Query: 59 -QVSKNEQTLQDTNTKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNE 117
++ K + L+D K+ +KK ++ +E ++ SLN + +E E++ Q
Sbjct: 55 DELDKYSEALKDAQEKLELAEKKATD--AEADVASLNRRIQLVEE-------ELDRAQER 105
Query: 118 IKHKSEKQEDLKKEMLELEKLVQQLESLVENEVKNIKETQQIIFKKKEELVEKTEPKIYS 177
+ +K E+ +K E E+ ++ +ES + + + + E Q+I K+ + + E + K
Sbjct: 106 LATALQKLEEAEKAADESERGMKVIESRAQKDEEKM-EIQEIQLKEAKHIAEDADRK--- 161
Query: 178 FYERIRR 184
YE + R
Sbjct: 162 -YEEVAR 167
Score = 34.3 bits (77), Expect = 0.014
Identities = 36/165 (21%), Positives = 77/165 (45%), Gaps = 25/165 (15%)
Query: 7 QLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAI---LNLEEEKLALK-LQVSK 62
QL+E LD+ + L + +K ++ +KA ++ E K I +EEK+ ++ +Q+ +
Sbjct: 93 QLVE-EELDRAQERLATAL-QKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKE 150
Query: 63 NEQTLQDTNTKIASIQKKMSEIKSEREL----------RSLNIEEDIAKERSNQANREIE 112
+ +D + K + +K+ I+S+ E + +EE+I +N + E +
Sbjct: 151 AKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQ 210
Query: 113 ---------NLQNEIKHKSEKQEDLKKEMLELEKLVQQLESLVEN 148
+ EIK S+K ++ + E+ V +LE +++
Sbjct: 211 AEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDD 255
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 44.7 bits (104), Expect = 1e-05
Identities = 46/187 (24%), Positives = 94/187 (49%), Gaps = 30/187 (16%)
Query: 5 LKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLAL--KLQVSK 62
+K+ +++ LDKE ++L+ D+A DK+A LE+E ++L KL+ ++
Sbjct: 4 IKKKMQMLKLDKE-NALDRA--------DEAEADKKAAEDRSKQLEDELVSLQKKLKATE 54
Query: 63 NE-----QTLQDTNTKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNE 117
+E + L+D K+ +KK ++ +E ++ SLN + +E E++ Q
Sbjct: 55 DELDKYSEALKDAQEKLELAEKKATD--AEADVASLNRRIQLFEE-------ELDRAQER 105
Query: 118 IKHKSEKQEDLKKEMLELEKLVQQLESLVENEVKNIKETQQIIFKKKEELVEKTEPKIYS 177
+ +K E+ +K E E+ ++ +ES + + + + E Q+I K+ + + E + K
Sbjct: 106 LATALQKLEEAEKAADESERGMKVIESRAQKDEEKM-EIQEIQLKEAKHIAEDADRK--- 161
Query: 178 FYERIRR 184
YE + R
Sbjct: 162 -YEEVAR 167
Score = 33.1 bits (74), Expect = 0.032
Identities = 36/165 (21%), Positives = 76/165 (45%), Gaps = 25/165 (15%)
Query: 7 QLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAI---LNLEEEKLALK-LQVSK 62
QL E LD+ + L + +K ++ +KA ++ E K I +EEK+ ++ +Q+ +
Sbjct: 93 QLFE-EELDRAQERLATAL-QKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKE 150
Query: 63 NEQTLQDTNTKIASIQKKMSEIKSEREL----------RSLNIEEDIAKERSNQANREIE 112
+ +D + K + +K+ I+S+ E + +EE+I +N + E +
Sbjct: 151 AKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQ 210
Query: 113 ---------NLQNEIKHKSEKQEDLKKEMLELEKLVQQLESLVEN 148
+ EIK S+K ++ + E+ V +LE +++
Sbjct: 211 AEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDD 255
>pdb|1CII| Colicin Ia
Length = 602
Score = 40.8 bits (94), Expect = 2e-04
Identities = 34/152 (22%), Positives = 73/152 (47%), Gaps = 23/152 (15%)
Query: 17 EIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNTKIAS 76
+I S E + R +L N+++ N A+ L +EK ++ Q+S N KIA
Sbjct: 364 KITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLS-------GINQKIAE 416
Query: 77 IQKKMSEIKSERELRSLNIE-------------EDIAKERSNQA-NREIENLQNEIKHKS 122
++K E+K+ ++ + E E +A+E + QA ++I N++ +K
Sbjct: 417 EKRKQDELKATKDAINFTTEFLKSVSEKYGAKAEQLAREMAGQAKGKKIRNVEEALKTYE 476
Query: 123 EKQEDLKKEMLELEK--LVQQLESLVENEVKN 152
+ + D+ K++ ++ + LES+ +++ +
Sbjct: 477 KYRADINKKINAKDRAAIAAALESVKLSDISS 508
>pdb|1QSD|A Chain A, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
pdb|1QSD|B Chain B, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
Length = 106
Score = 37.0 bits (84), Expect = 0.002
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 12 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTN 71
+ LD ++ +L+ L +E+ + L D+EA + L+E+K + K E+ L DT
Sbjct: 4 TQLDIKVKALKRLTKEEGY-YQQELKDQEAH---VAKLKEDKSVDPYDLKKQEEVLDDTK 59
Query: 72 TKIASIQKKMSEIKSERE--LRSLNIEEDIAKERS 104
+ ++ +K+ E K + E L++ ED++ RS
Sbjct: 60 RLLPTLYEKIREFKEDLEQFLKTYQGTEDVSDARS 94
Score = 28.9 bits (63), Expect = 0.60
Identities = 19/83 (22%), Positives = 40/83 (47%), Gaps = 12/83 (14%)
Query: 106 QANREIENLQNEIKHKSEKQEDLKKEMLELEKLVQQLESLVENEVKNIKETQQIIFKKKE 165
Q + +++ L+ K + Q++LK + + KL K K KK+E
Sbjct: 5 QLDIKVKALKRLTKEEGYYQQELKDQEAHVAKL------------KEDKSVDPYDLKKQE 52
Query: 166 ELVEKTEPKIYSFYERIRRWAKN 188
E+++ T+ + + YE+IR + ++
Sbjct: 53 EVLDDTKRLLPTLYEKIREFKED 75
>pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolipoprotein-Manduca
Sexta Apolipophorin-Iii
Length = 166
Score = 33.9 bits (76), Expect = 0.019
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 50 EEEKLALKLQVSKNEQTLQDTNTKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANR 109
E EK A + Q + +EQ N+K K + S+ L+ L+ + + AN
Sbjct: 11 EMEKHAKEFQKTFSEQFNSLVNSKNTQDFNKALKDGSDSVLQQLSAFSSSLQGAISDANG 70
Query: 110 EIENLQNEIKHKSEKQ-EDLKKEMLELEK----LVQQLESLVENEVKNIKETQQIIFKKK 164
+ + + + EK E+L+K ++EK +L++ V+ V+ ++ + +
Sbjct: 71 KAKEALEQARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNM 130
Query: 165 EELVEKTEPKIYSFYE 180
EE +K PKI Y+
Sbjct: 131 EETNKKLAPKIKQAYD 146
>pdb|1HA0|A Chain A, Hemagglutinin Precursor Ha0
Length = 494
Score = 33.1 bits (74), Expect = 0.032
Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 114 LQNEIKHKSEKQEDLKKEMLELEKLVQQLESLVENEVKNI--KETQQIIFKKKEELVEKT 171
L I+ +EK ++KE E+E +Q LE VE+ ++ + ++ + + ++ T
Sbjct: 373 LNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLT 432
Query: 172 EPKIYSFYERIRRWAKNTSIVTIKKQACGGCF 203
+ ++ +E+ RR + + ++ GCF
Sbjct: 433 DSEMNKLFEKTRRQLRENA-----EEMGNGCF 459
>pdb|1HTM|D Chain D, Hemagglutinin Ectodomain (Soluble Fragment, Tbha2)
pdb|1HTM|F Chain F, Hemagglutinin Ectodomain (Soluble Fragment, Tbha2)
pdb|1HTM|B Chain B, Hemagglutinin Ectodomain (Soluble Fragment, Tbha2)
Length = 138
Score = 33.1 bits (74), Expect = 0.032
Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 114 LQNEIKHKSEKQEDLKKEMLELEKLVQQLESLVENEVKNI--KETQQIIFKKKEELVEKT 171
L I+ +EK ++KE E+E +Q LE VE+ ++ + ++ + + ++ T
Sbjct: 15 LNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLT 74
Query: 172 EPKIYSFYERIRRWAKNTSIVTIKKQACGGCF 203
+ ++ +E+ RR + + ++ GCF
Sbjct: 75 DSEMNKLFEKTRRQLRENA-----EEMGNGCF 101
>pdb|2VIU|B Chain B, Influenza Virus Hemagglutinin
pdb|1HGE|B Chain B, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains Complex With
Alpha-2-O-Methyl-5-N-Acetyl-Alpha-D-Neuraminic Acid
pdb|1HGE|D Chain D, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains Complex With
Alpha-2-O-Methyl-5-N-Acetyl-Alpha-D-Neuraminic Acid
pdb|1HGE|F Chain F, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains Complex With
Alpha-2-O-Methyl-5-N-Acetyl-Alpha-D-Neuraminic Acid
pdb|1HGH|B Chain B, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2-O-(4'-Benzylamidocarboxybutyl)-5-N-
Acetylneuraminic Acid
pdb|1HGH|D Chain D, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2-O-(4'-Benzylamidocarboxybutyl)-5-N-
Acetylneuraminic Acid
pdb|1HGH|F Chain F, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2-O-(4'-Benzylamidocarboxybutyl)-5-N-
Acetylneuraminic Acid
pdb|1HGI|B Chain B, Hemagglutinin (Bromelain Digested) Complexed With
4-O-Acetyl-Alpha-2-O-Methyl-5-Acetyl-Neuraminic Acid
pdb|1HGI|D Chain D, Hemagglutinin (Bromelain Digested) Complexed With
4-O-Acetyl-Alpha-2-O-Methyl-5-Acetyl-Neuraminic Acid
pdb|1HGI|F Chain F, Hemagglutinin (Bromelain Digested) Complexed With
4-O-Acetyl-Alpha-2-O-Methyl-5-Acetyl-Neuraminic Acid
pdb|1HGJ|B Chain B, Hemagglutinin (Bromelain Digested) Complex With
9-Amino-9-Deoxy-Alpha-2-O-Methyl-5-N-Acetyl-Neuraminic
Acid
pdb|1HGJ|D Chain D, Hemagglutinin (Bromelain Digested) Complex With
9-Amino-9-Deoxy-Alpha-2-O-Methyl-5-N-Acetyl-Neuraminic
Acid
pdb|1HGJ|F Chain F, Hemagglutinin (Bromelain Digested) Complex With
9-Amino-9-Deoxy-Alpha-2-O-Methyl-5-N-Acetyl-Neuraminic
Acid
pdb|1HGD|B Chain B, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains
pdb|1HGD|D Chain D, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains
pdb|1HGD|F Chain F, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains
pdb|1EO8|B Chain B, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|1HGG|B Chain B, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2,3-Sialyllactose
pdb|1HGG|D Chain D, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2,3-Sialyllactose
pdb|1HGG|F Chain F, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2,3-Sialyllactose
pdb|3HMG|B Chain B, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains)
pdb|3HMG|D Chain D, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains)
pdb|3HMG|F Chain F, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains)
pdb|4HMG|B Chain B, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains) Complex With
Sialic Acid
pdb|4HMG|D Chain D, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains) Complex With
Sialic Acid
pdb|4HMG|F Chain F, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains) Complex With
Sialic Acid
pdb|1HGF|B Chain B, Hemagglutinin (Bromelain Digested)
pdb|1HGF|D Chain D, Hemagglutinin (Bromelain Digested)
pdb|1HGF|F Chain F, Hemagglutinin (Bromelain Digested)
pdb|2HMG|B Chain B, Hemagglutinin (G146(A)D) (Bromelain Digested) (Mutant With
Gly 146 Replaced By Asp In Ha1 Chains)
pdb|2HMG|D Chain D, Hemagglutinin (G146(A)D) (Bromelain Digested) (Mutant With
Gly 146 Replaced By Asp In Ha1 Chains)
pdb|2HMG|F Chain F, Hemagglutinin (G146(A)D) (Bromelain Digested) (Mutant With
Gly 146 Replaced By Asp In Ha1 Chains)
pdb|1KEN|B Chain B, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|D Chain D, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|F Chain F, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1QFU|B Chain B, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
Length = 175
Score = 33.1 bits (74), Expect = 0.032
Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 114 LQNEIKHKSEKQEDLKKEMLELEKLVQQLESLVENEVKNI--KETQQIIFKKKEELVEKT 171
L I+ +EK ++KE E+E +Q LE VE+ ++ + ++ + + ++ T
Sbjct: 52 LNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLT 111
Query: 172 EPKIYSFYERIRRWAKNTSIVTIKKQACGGCF 203
+ ++ +E+ RR + + ++ GCF
Sbjct: 112 DSEMNKLFEKTRRQLRENA-----EEMGNGCF 138
>pdb|1F1M|A Chain A, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|B Chain B, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|C Chain C, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|D Chain D, Crystal Structure Of Outer Surface Protein C (Ospc)
Length = 164
Score = 32.0 bits (71), Expect = 0.071
Identities = 33/143 (23%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 30 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNTKIASIQKKMSEIKSERE 89
K+++ L + KAI + ++L + N + I KK+S IK E
Sbjct: 23 KEVETLLTSIDELAKAIGKKIKSDVSLDNEADHNGSLMSGAYLISTLITKKISAIKDSGE 82
Query: 90 LRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQEDLKKEMLELE----KLVQQLESL 145
L++ E + AK+ S + +++ ++ + ++ KK +L+ K +LE L
Sbjct: 83 LKA---EIEKAKKCSEEFTAKLKGEHTDLGKEGVTDDNAKKAILKTNNDKTKGADELEKL 139
Query: 146 VENEVKNI-KETQQIIFKKKEEL 167
E+ VKN+ K ++++ +EL
Sbjct: 140 FES-VKNLSKAAKEMLTNSVKEL 161
>pdb|1QU1|F Chain F, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|C Chain C, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|D Chain D, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|E Chain E, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|B Chain B, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|A Chain A, Crystal Structure Of Eha2 (23-185)
Length = 155
Score = 31.6 bits (70), Expect = 0.093
Identities = 17/73 (23%), Positives = 38/73 (51%), Gaps = 2/73 (2%)
Query: 114 LQNEIKHKSEKQEDLKKEMLELEKLVQQLESLVENEVKNI--KETQQIIFKKKEELVEKT 171
L I+ +EK ++KE E+E +Q LE VE+ ++ + ++ + + ++ T
Sbjct: 22 LNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLT 81
Query: 172 EPKIYSFYERIRR 184
+ ++ +E+ RR
Sbjct: 82 DSEMNKLFEKTRR 94
>pdb|5HMG|B Chain B, Hemagglutinin (D112(B)G) (Bromelain Digested) (Mutant With
Asp 112 Replaced By Gly In Ha2 Chains) Complex With
Sialic Acid
pdb|5HMG|D Chain D, Hemagglutinin (D112(B)G) (Bromelain Digested) (Mutant With
Asp 112 Replaced By Gly In Ha2 Chains) Complex With
Sialic Acid
pdb|5HMG|F Chain F, Hemagglutinin (D112(B)G) (Bromelain Digested) (Mutant With
Asp 112 Replaced By Gly In Ha2 Chains) Complex With
Sialic Acid
Length = 175
Score = 31.6 bits (70), Expect = 0.093
Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 114 LQNEIKHKSEKQEDLKKEMLELEKLVQQLESLVENEVKNI--KETQQIIFKKKEELVEKT 171
L I+ +EK ++KE E+E +Q LE VE+ ++ + ++ + + ++ T
Sbjct: 52 LNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLT 111
Query: 172 EPKIYSFYERIRRWAKNTSIVTIKKQACGGCF 203
++ +E+ RR + + ++ GCF
Sbjct: 112 GSEMNKLFEKTRRQLRENA-----EEMGNGCF 138
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 31.2 bits (69), Expect = 0.12
Identities = 19/68 (27%), Positives = 34/68 (49%), Gaps = 12/68 (17%)
Query: 13 HLDKEIDSLEPLIREKRKDLDKALNDK------------EAKNKAILNLEEEKLALKLQV 60
+L +ID+ + + + R+DL A D E+K KA+ LEE+ + L++Q
Sbjct: 445 NLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQA 504
Query: 61 SKNEQTLQ 68
+ E+ Q
Sbjct: 505 TDREENKQ 512
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 31.2 bits (69), Expect = 0.12
Identities = 19/68 (27%), Positives = 34/68 (49%), Gaps = 12/68 (17%)
Query: 13 HLDKEIDSLEPLIREKRKDLDKALNDK------------EAKNKAILNLEEEKLALKLQV 60
+L +ID+ + + + R+DL A D E+K KA+ LEE+ + L++Q
Sbjct: 444 NLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQA 503
Query: 61 SKNEQTLQ 68
+ E+ Q
Sbjct: 504 TDREENKQ 511
>pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex
Length = 592
Score = 31.2 bits (69), Expect = 0.12
Identities = 19/68 (27%), Positives = 34/68 (49%), Gaps = 12/68 (17%)
Query: 13 HLDKEIDSLEPLIREKRKDLDKALNDK------------EAKNKAILNLEEEKLALKLQV 60
+L +ID+ + + + R+DL A D E+K KA+ LEE+ + L++Q
Sbjct: 473 NLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQA 532
Query: 61 SKNEQTLQ 68
+ E+ Q
Sbjct: 533 TDREENKQ 540
>pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyrus Kandleri
Length = 404
Score = 30.8 bits (68), Expect = 0.16
Identities = 23/83 (27%), Positives = 42/83 (49%), Gaps = 6/83 (7%)
Query: 83 EIKSERELRSLNIEEDIAKERS------NQANREIENLQNEIKHKSEKQEDLKKEMLELE 136
E +R+ RS + DIA R N + E+ + + E E +KE+ ++E
Sbjct: 249 EALRKRDRRSPILIIDIANPRDVEEGVENIEDVEVRTIDDLRVIARENLERRRKEIPKVE 308
Query: 137 KLVQQLESLVENEVKNIKETQQI 159
KL+++ S VE E++ +KE + +
Sbjct: 309 KLIEEELSTVEEELEKLKERRLV 331
>pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2) From Escherichia
Coli
Length = 365
Score = 30.8 bits (68), Expect = 0.16
Identities = 17/71 (23%), Positives = 37/71 (51%), Gaps = 2/71 (2%)
Query: 73 KIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQEDLKKEM 132
+I + ++ ++ ++ ++ D KER + N E+E Q ++ ++ E+ + L KE
Sbjct: 3 EINPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELE--QPDVWNEPERAQALGKER 60
Query: 133 LELEKLVQQLE 143
LE +V L+
Sbjct: 61 SSLEAVVDTLD 71
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 30.4 bits (67), Expect = 0.21
Identities = 35/166 (21%), Positives = 71/166 (42%), Gaps = 30/166 (18%)
Query: 5 LKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNE 64
L++L+++ H D E +++E IR KD+D +L +++LA +L+ +++
Sbjct: 350 LQELLDL-HRDSEREAIEVFIRSSFKDVD--------------HLFQKELAAQLEKKRDD 394
Query: 65 QTLQDTNTKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEK 124
K+ E S+R L + I + I + + +K
Sbjct: 395 ------------FCKQNQEASSDRCSGLLQV---IFSPLEEEVKAGIYSKPGGYRLFVQK 439
Query: 125 QEDLKKEMLELEKLVQQLESLVENEVKNIKETQQIIFKKKEELVEK 170
+DLKK+ E + Q E +++ +K+ + I + + L EK
Sbjct: 440 LQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEK 485
Score = 28.1 bits (61), Expect = 1.0
Identities = 30/167 (17%), Positives = 76/167 (44%), Gaps = 22/167 (13%)
Query: 24 LIREKRKDLDKALNDKEAKN----KAILNLEEEKLALKLQVSKNEQTLQDTNTKIASIQK 79
L +K +DL K ++ K + + + K ++ + + +QTL + +I
Sbjct: 435 LFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEI----- 489
Query: 80 KMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQEDLKKEMLELEKLV 139
++ +K+E S + ++ ++ ++ + Q +K +EK E+ + ++L+ ++
Sbjct: 490 EVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERT 549
Query: 140 QQLESLVENEVKNIKETQQIIFK--KKEELVEKTEPKIYSFYERIRR 184
L+ ++E +Q++ + +KE + K E I ++RR
Sbjct: 550 LALK---------LQEQEQLLKEGFQKESRIMKNE--IQDLQTKMRR 585
>pdb|1JOC|B Chain B, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
Length = 125
Score = 30.4 bits (67), Expect = 0.21
Identities = 19/71 (26%), Positives = 35/71 (48%), Gaps = 5/71 (7%)
Query: 48 NLEEEKLALKLQVSKNEQTLQDTNTKIASIQKKMSEIKSE-----RELRSLNIEEDIAKE 102
N ++E+ AL + K E ++ TK+ +Q+K+ + RE +SL I+ A
Sbjct: 1 NNQDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQALN 60
Query: 103 RSNQANREIEN 113
R + E++N
Sbjct: 61 RKWAEDNEVQN 71
>pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
Length = 1290
Score = 30.4 bits (67), Expect = 0.21
Identities = 26/93 (27%), Positives = 43/93 (45%), Gaps = 1/93 (1%)
Query: 74 IASIQKKMSEIKSERELRSLNIE-EDIAKERSNQANREIENLQNEIKHKSEKQEDLKKEM 132
+ I K I SE+E ++NI+ DI + + N+ I+N+ N I S K
Sbjct: 729 LEEIIKYRYNIYSEKEKSNINIDFNDINSKLNEGINQAIDNINNFINGCSVSYLMKKMIP 788
Query: 133 LELEKLVQQLESLVENEVKNIKETQQIIFKKKE 165
L +EKL+ +L +N + I E + + E
Sbjct: 789 LAVEKLLDFDNTLKKNLLNYIDENKLYLIGSAE 821
>pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus Thermophilus
Length = 185
Score = 30.4 bits (67), Expect = 0.21
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 20 SLEPLIREKRKDLDKALND-KEAKNKAILNLEEE------KLALKLQVSKNEQTLQDTNT 72
++ PL E+RKDL +A+ E AI N+ E KLA +L +S++E T
Sbjct: 102 NIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDE-----TKR 156
Query: 73 KIASIQKKMSEIKSERELRSLNIEEDI 99
A IQK E ++ + + E++I
Sbjct: 157 AEAEIQKITDEFIAKADQLAEKKEQEI 183
>pdb|1ENV|A Chain A, Atomic Structure Of The Ectodomain From Hiv-1 Gp41
Length = 123
Score = 30.0 bits (66), Expect = 0.27
Identities = 30/130 (23%), Positives = 64/130 (49%), Gaps = 18/130 (13%)
Query: 8 LIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTL 67
L +I H++ EI ++ LI E R+ L + + +N + +E ++ L+L V +
Sbjct: 12 LSKIYHIENEIARIKKLIGEARQLLSGIV---QQQNNLLRAIEAQQHLLQLTV----WGI 64
Query: 68 QDTNTKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQED 127
+ +I ++++ + K + + + + +I N I +L E +++ EK E
Sbjct: 65 KQLQARILAVERYL---KDQNNMTWMEWDREI-----NNYTSLIHSLIEESQNQQEKNE- 115
Query: 128 LKKEMLELEK 137
+E+LEL+K
Sbjct: 116 --QELLELDK 123
>pdb|1BG1|A Chain A, Three-Dimensional Structure Of The Stat3b Homodimer Bound
To Dna
Length = 722
Score = 30.0 bits (66), Expect = 0.27
Identities = 19/105 (18%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 64 EQTLQDTNTKIASIQKKMSEIKSERE--------LRSLNIEEDIAKERSNQANREIENLQ 115
EQ LQD ++ +++KM +++ ++ L+S +D+ + ++++ L+
Sbjct: 145 EQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQSVTRQKMQQLE 204
Query: 116 NEIKHKSEKQEDLKKEMLELEKLVQQLE-SLVENEVKNIKETQQI 159
+ + + + E+ L ++ ++ +L + E+ + K QQI
Sbjct: 205 QMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQI 249
>pdb|1G5Z|A Chain A, Crystal Structure Of Lyme Disease Antigen Outer Surface
Protein C (Ospc) From Borrelia Burgdorferi Strain N40
Length = 164
Score = 29.6 bits (65), Expect = 0.35
Identities = 35/161 (21%), Positives = 71/161 (43%), Gaps = 22/161 (13%)
Query: 6 KQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQ 65
K++ E + + + +E L+ + KA+ K N L+ SKN
Sbjct: 8 KKITESNAVVLAVKEVETLLASIDELATKAIGKKIGNN-----------GLEANQSKNTS 56
Query: 66 TLQDTNTKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANRE-----IENLQNEIKH 120
L I +K++ +K+E ++ + + E +N+ E ++NL ++
Sbjct: 57 LLSGAYAISDLIAEKLNVLKNEELKEKIDTAKQCSTEFTNKLKSEHAVLGLDNLTDDNAQ 116
Query: 121 KS--EKQEDLKKEMLELEKLVQQLESL---VENEVKN-IKE 155
++ +K + K ELEKL + +E+L ++ +KN +KE
Sbjct: 117 RAILKKHANKDKGAAELEKLFKAVENLSKAAQDTLKNAVKE 157
>pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococcus Aureus Fema
Length = 426
Score = 29.3 bits (64), Expect = 0.46
Identities = 20/88 (22%), Positives = 45/88 (50%), Gaps = 1/88 (1%)
Query: 81 MSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQEDLKKEMLELEKLVQ 140
++ I + ++ LN E DI + N+A ++IE + E K K+++L++++ E+ ++
Sbjct: 240 LAYINFDEYIKELNEERDILNKDLNKALKDIEK-RPENKKAHNKRDNLQQQLDANEQKIE 298
Query: 141 QLESLVENEVKNIKETQQIIFKKKEELV 168
+ + L E + + F E+V
Sbjct: 299 EGKRLQEEHGNELPISAGFFFINPFEVV 326
>pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recycling Factor
Length = 184
Score = 28.9 bits (63), Expect = 0.60
Identities = 38/185 (20%), Positives = 77/185 (41%), Gaps = 28/185 (15%)
Query: 18 IDSLEPLIREKRKDLDKA----------LNDKEAKNKAILNLEEEKLALKLQVSK----- 62
I LE + +E KD+ KA L A + ++ E K+ + +
Sbjct: 2 IKELEDIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTIS 61
Query: 63 ----NEQTLQ--DTNTKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQN 116
N+ +Q D N + +I+K + E + N+ + + RE+ L +
Sbjct: 62 VPEHNQIVIQVWDQNA-VPAIEKAIREELNLNPTVQGNVIRVTLPPLTEERRRELVRLLH 120
Query: 117 EIKHKSEKQEDLKKEMLELEKLVQQLESLVENEVKNIKETQQIIFKKK----EELVEKTE 172
+I ++ + ++ E ++++++LE + E+E K E Q + K +L+E E
Sbjct: 121 KITEEARVR--VRNVRREAKEMIEELEGISEDEKKRALERLQKLTDKYIDEINKLMEAKE 178
Query: 173 PKIYS 177
+I S
Sbjct: 179 KEIMS 183
>pdb|1H88|B Chain B, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H88|A Chain A, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1IO4|B Chain B, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN-
Cbfbeta Core Domain Heterodimer And CEBPBETA BZIP
Homodimer Bound To A Dna Fragment From The Csf-1r
Promoter
pdb|1H8A|A Chain A, Crystal Structure Of Ternary Protein-Dna Complex3
pdb|1H8A|B Chain B, Crystal Structure Of Ternary Protein-Dna Complex3
pdb|1IO4|A Chain A, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN-
Cbfbeta Core Domain Heterodimer And CEBPBETA BZIP
Homodimer Bound To A Dna Fragment From The Csf-1r
Promoter
Length = 78
Score = 28.5 bits (62), Expect = 0.79
Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 42 KNKAILNLEEEKLALKLQVSKNEQTLQDTNTKIASIQKKMSEIKSERELRSLNIEEDIAK 101
K+KA +++ K++ +N ++ + K KM ++++ ++ L E + +
Sbjct: 2 KSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKA-----KMRNLETQHKVLELTAENERLQ 56
Query: 102 ERSNQANREIENLQNEIKHKSE 123
++ Q +RE+ L+N K E
Sbjct: 57 KKVEQLSRELSTLRNLFKQLPE 78
>pdb|1GK4|A Chain A, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|B Chain B, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|D Chain D, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|F Chain F, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|C Chain C, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|E Chain E, Human Vimentin Coil 2b Fragment (Cys2)
Length = 84
Score = 28.5 bits (62), Expect = 0.79
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 76 SIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQEDLKKEMLEL 135
S++++M E++ + + N ++ I + + EI+N++ E+ + +DL + L
Sbjct: 12 SLERQMREMEENFAVEAANYQDTIGRLQD-----EIQNMKEEMARHLREYQDLLNVKMAL 66
Query: 136 EKLVQQLESLVENEVKNI 153
+ + L+E E I
Sbjct: 67 DIEIATYRKLLEGEESRI 84
>pdb|1HJB|D Chain D, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE
Csf-1r Promoter
pdb|1HJB|E Chain E, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE
Csf-1r Promoter
pdb|1HJB|B Chain B, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE
Csf-1r Promoter
pdb|1HJB|A Chain A, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE
Csf-1r Promoter
Length = 87
Score = 28.5 bits (62), Expect = 0.79
Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 42 KNKAILNLEEEKLALKLQVSKNEQTLQDTNTKIASIQKKMSEIKSERELRSLNIEEDIAK 101
K+KA +++ K++ +N ++ + K KM ++++ ++ L E + +
Sbjct: 2 KSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKA-----KMRNLETQHKVLELTAENERLQ 56
Query: 102 ERSNQANREIENLQNEIKHKSE 123
++ Q +RE+ L+N K E
Sbjct: 57 KKVEQLSRELSTLRNLFKQLPE 78
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 28.1 bits (61), Expect = 1.0
Identities = 14/68 (20%), Positives = 36/68 (52%)
Query: 101 KERSNQANREIENLQNEIKHKSEKQEDLKKEMLELEKLVQQLESLVENEVKNIKETQQII 160
K+ + N+E+E L+ E + KS+ ++ + E K + + +++K +++ + ++
Sbjct: 40 KDSKSNLNKELETLREENRVKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLL 99
Query: 161 FKKKEELV 168
+ KE V
Sbjct: 100 NEDKERTV 107
>pdb|1IYR|A Chain A, Nmr Structure Ensamble Of Dff-C Domain
Length = 111
Score = 28.1 bits (61), Expect = 1.0
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 6 KQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQ 65
KQ E+S ++ LE + +E K L ALN K + + E +LAL+LQ +++
Sbjct: 28 KQAPELSLSSQD---LELVTKEDPKALAVALNWDIKKTETVQEACERELALRLQQTQSLH 84
Query: 66 TLQDTNTKIASIQKKMSEIKSERE 89
+L+ + AS + K R+
Sbjct: 85 SLRSISASKASPPGDLQNPKRARQ 108
>pdb|1BZH|A Chain A, Cyclic Peptide Inhibitor Of Human Ptp1b
Length = 298
Score = 27.3 bits (59), Expect = 1.8
Identities = 20/70 (28%), Positives = 35/70 (49%), Gaps = 8/70 (11%)
Query: 38 DKEAKNKAILNLEEEKLALKL-----QVSKNEQTLQDTNTKIASIQKKMSEIKSERELRS 92
+++++ +LN EK +LK Q + E +DTN K+ I + +IKS +R
Sbjct: 101 EQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISE---DIKSYYTVRQ 157
Query: 93 LNIEEDIAKE 102
L +E +E
Sbjct: 158 LELENLTTQE 167
>pdb|1I57|A Chain A, Crystal Structure Of Apo Human Ptp1b (C215s) Mutant
Length = 310
Score = 27.3 bits (59), Expect = 1.8
Identities = 20/70 (28%), Positives = 35/70 (49%), Gaps = 8/70 (11%)
Query: 38 DKEAKNKAILNLEEEKLALKL-----QVSKNEQTLQDTNTKIASIQKKMSEIKSERELRS 92
+++++ +LN EK +LK Q + E +DTN K+ I + +IKS +R
Sbjct: 113 EQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISE---DIKSYYTVRQ 169
Query: 93 LNIEEDIAKE 102
L +E +E
Sbjct: 170 LELENLTTQE 179
>pdb|1EEN|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-D-A-D-Bpa-Ptyr-L-I-P-Q-Q-G
pdb|1PTY| Crystal Structure Of Protein Tyrosine Phosphatase 1b Complexed
With Two Phosphotyrosine Molecules
pdb|1EEO|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-E-L-E-F-Ptyr-M-D-Y-E-Nh2
Length = 321
Score = 27.3 bits (59), Expect = 1.8
Identities = 20/70 (28%), Positives = 35/70 (49%), Gaps = 8/70 (11%)
Query: 38 DKEAKNKAILNLEEEKLALKL-----QVSKNEQTLQDTNTKIASIQKKMSEIKSERELRS 92
+++++ +LN EK +LK Q + E +DTN K+ I + +IKS +R
Sbjct: 101 EQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISE---DIKSYYTVRQ 157
Query: 93 LNIEEDIAKE 102
L +E +E
Sbjct: 158 LELENLTTQE 167
>pdb|1A5Y| Protein Tyrosine Phosphatase 1b Cysteinyl-Phosphate Intermediate
Length = 330
Score = 27.3 bits (59), Expect = 1.8
Identities = 20/70 (28%), Positives = 35/70 (49%), Gaps = 8/70 (11%)
Query: 38 DKEAKNKAILNLEEEKLALKL-----QVSKNEQTLQDTNTKIASIQKKMSEIKSERELRS 92
+++++ +LN EK +LK Q + E +DTN K+ I + +IKS +R
Sbjct: 101 EQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISE---DIKSYYTVRQ 157
Query: 93 LNIEEDIAKE 102
L +E +E
Sbjct: 158 LELENLTTQE 167
>pdb|1KAK|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1KAV|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1G7G|A Chain A, Human Ptp1b Catalytic Domain Complexes With Pnu179326
pdb|1G7F|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177496
pdb|1JF7|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1JF7|B Chain B, Human Ptp1b Catalytic Domain Complexed With Pnu177836
Length = 298
Score = 27.3 bits (59), Expect = 1.8
Identities = 20/70 (28%), Positives = 35/70 (49%), Gaps = 8/70 (11%)
Query: 38 DKEAKNKAILNLEEEKLALKL-----QVSKNEQTLQDTNTKIASIQKKMSEIKSERELRS 92
+++++ +LN EK +LK Q + E +DTN K+ I + +IKS +R
Sbjct: 101 EQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISE---DIKSYYTVRQ 157
Query: 93 LNIEEDIAKE 102
L +E +E
Sbjct: 158 LELENLTTQE 167
>pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|B Chain B, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|C Chain C, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|D Chain D, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
Length = 295
Score = 27.3 bits (59), Expect = 1.8
Identities = 20/70 (28%), Positives = 35/70 (49%), Gaps = 8/70 (11%)
Query: 38 DKEAKNKAILNLEEEKLALKL-----QVSKNEQTLQDTNTKIASIQKKMSEIKSERELRS 92
+++++ +LN EK +LK Q + E +DTN K+ I + +IKS +R
Sbjct: 113 EQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISE---DIKSYYTVRQ 169
Query: 93 LNIEEDIAKE 102
L +E +E
Sbjct: 170 LELENLTTQE 179
>pdb|1BZC|A Chain A, Human Ptp1b Catalytic Domain Complexed With Tpi
Length = 321
Score = 27.3 bits (59), Expect = 1.8
Identities = 20/70 (28%), Positives = 35/70 (49%), Gaps = 8/70 (11%)
Query: 38 DKEAKNKAILNLEEEKLALKL-----QVSKNEQTLQDTNTKIASIQKKMSEIKSERELRS 92
+++++ +LN EK +LK Q + E +DTN K+ I + +IKS +R
Sbjct: 101 EQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISE---DIKSYYTVRQ 157
Query: 93 LNIEEDIAKE 102
L +E +E
Sbjct: 158 LELENLTTQE 167
>pdb|1AAX| Crystal Structure Of Protein Tyrosine Phosphatase 1b Complexed
With Two Bis(Para-Phosphophenyl)methane (Bppm) Molecules
Length = 321
Score = 27.3 bits (59), Expect = 1.8
Identities = 20/70 (28%), Positives = 35/70 (49%), Gaps = 8/70 (11%)
Query: 38 DKEAKNKAILNLEEEKLALKL-----QVSKNEQTLQDTNTKIASIQKKMSEIKSERELRS 92
+++++ +LN EK +LK Q + E +DTN K+ I + +IKS +R
Sbjct: 101 EQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISE---DIKSYYTVRQ 157
Query: 93 LNIEEDIAKE 102
L +E +E
Sbjct: 158 LELENLTTQE 167
>pdb|1BZJ|A Chain A, Human Ptp1b Complexed With Tpicooh
Length = 297
Score = 27.3 bits (59), Expect = 1.8
Identities = 20/70 (28%), Positives = 35/70 (49%), Gaps = 8/70 (11%)
Query: 38 DKEAKNKAILNLEEEKLALKL-----QVSKNEQTLQDTNTKIASIQKKMSEIKSERELRS 92
+++++ +LN EK +LK Q + E +DTN K+ I + +IKS +R
Sbjct: 100 EQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISE---DIKSYYTVRQ 156
Query: 93 LNIEEDIAKE 102
L +E +E
Sbjct: 157 LELENLTTQE 166
>pdb|2HNQ| Protein-Tyrosine Phosphatase 1b (Human) (E.C.3.1.3.48) Complexed
With Sodium Tungstate
pdb|2HNP| Protein-Tyrosine Phosphatase 1b (Human) (E.C.3.1.3.48)
Length = 321
Score = 27.3 bits (59), Expect = 1.8
Identities = 20/70 (28%), Positives = 35/70 (49%), Gaps = 8/70 (11%)
Query: 38 DKEAKNKAILNLEEEKLALKL-----QVSKNEQTLQDTNTKIASIQKKMSEIKSERELRS 92
+++++ +LN EK +LK Q + E +DTN K+ I + +IKS +R
Sbjct: 101 EQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISE---DIKSYYTVRQ 157
Query: 93 LNIEEDIAKE 102
L +E +E
Sbjct: 158 LELENLTTQE 167
>pdb|1G1H|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Bis-Phosphorylated Peptide
(Etd(Ptr)(Ptr) Rkggkgll) From The Insulin Receptor
Kinase
pdb|1G1G|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Mono-Phosphorylated Peptide (Etdy(Ptr)
Rkggkgll) From The Insulin Receptor Kinase
pdb|1G1F|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Tri-Phosphorylated Peptide (Rdi(Ptr)
Etd(Ptr)(Ptr)rk) From The Insulin Receptor Kinase
Length = 298
Score = 27.3 bits (59), Expect = 1.8
Identities = 20/70 (28%), Positives = 35/70 (49%), Gaps = 8/70 (11%)
Query: 38 DKEAKNKAILNLEEEKLALKL-----QVSKNEQTLQDTNTKIASIQKKMSEIKSERELRS 92
+++++ +LN EK +LK Q + E +DTN K+ I + +IKS +R
Sbjct: 101 EQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISE---DIKSYYTVRQ 157
Query: 93 LNIEEDIAKE 102
L +E +E
Sbjct: 158 LELENLTTQE 167
>pdb|1IC2|A Chain A, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|C Chain C, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|B Chain B, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|D Chain D, Deciphering The Design Of The Tropomyosin Molecule
Length = 81
Score = 26.9 bits (58), Expect = 2.3
Identities = 19/77 (24%), Positives = 39/77 (49%), Gaps = 9/77 (11%)
Query: 5 LKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNE 64
+K+ +++ LDKE L R ++ + DK ++ +K LE+E +AL+ ++ E
Sbjct: 4 IKKKMQMLKLDKE----NALDRAEQAEADKKAAEERSKQ-----LEDELVALQKKLKGTE 54
Query: 65 QTLQDTNTKIASIQKKM 81
L + + Q+K+
Sbjct: 55 DELDKYSESLKDAQEKL 71
>pdb|1D7M|A Chain A, Coiled-Coil Dimerization Domain From Cortexillin I
pdb|1D7M|B Chain B, Coiled-Coil Dimerization Domain From Cortexillin I
Length = 101
Score = 26.9 bits (58), Expect = 2.3
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 107 ANREIENLQNEIKHKSEKQEDLKKEMLELEKLVQQLESLVENEVKNIKETQQIIFKKKEE 166
ANR + L+N ++ + +E L K+ +L L+ LES K ++E + K +E
Sbjct: 3 ANR-LAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELE----AKLDE 57
Query: 167 LVEKTEPKIYSFYE---RIRRWAKNTSIVTIK 195
++ E + + E R+ + K+ +I+ +K
Sbjct: 58 TLKNLELEKLARMELEARLAKTEKDRAILELK 89
>pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
Length = 162
Score = 26.6 bits (57), Expect = 3.0
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 108 NREIENLQNEIKHK-----SEKQEDLKKEMLELEKLVQQL--ESLVENEVKNIKETQQI 159
N+ +E +NE+K+K K E++KKE+ ++ V+ + + E+ I E + +
Sbjct: 63 NKSVEEFENELKNKLTEEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGV 121
>pdb|1DD5|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Recycling Factor, Rrf
Length = 185
Score = 26.6 bits (57), Expect = 3.0
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 60 VSKNEQTLQDTNTKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIK 119
V K ++ +++ I +I++++ + E + L I ED AK N EI+ L +E
Sbjct: 114 VKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGL-IPEDDAKRLEN----EIQKLTDEFI 168
Query: 120 HKSEKQEDLKKE 131
K ++ ++KKE
Sbjct: 169 EKLDEVFEIKKE 180
>pdb|1LQ7|A Chain A, De Novo Designed Protein Model Of Radical Enzymes
Length = 67
Score = 26.2 bits (56), Expect = 3.9
Identities = 21/69 (30%), Positives = 36/69 (51%), Gaps = 15/69 (21%)
Query: 111 IENLQNEIKHKSEKQ---------EDLKKEMLELEKLVQQLESLVENEVKNIKETQQIIF 161
++ L+ ++K EK E+LKK+ EL+K +++L EVK ++E
Sbjct: 4 VKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGG--GGEVKKVEEE----V 57
Query: 162 KKKEELVEK 170
KK EE ++K
Sbjct: 58 KKLEEEIKK 66
>pdb|1PTV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine
Length = 321
Score = 26.2 bits (56), Expect = 3.9
Identities = 19/70 (27%), Positives = 35/70 (49%), Gaps = 8/70 (11%)
Query: 38 DKEAKNKAILNLEEEKLALKL-----QVSKNEQTLQDTNTKIASIQKKMSEIKSERELRS 92
+++++ +LN EK +LK Q + E +DTN K+ I + +IK+ +R
Sbjct: 101 EQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISE---DIKTYYTVRQ 157
Query: 93 LNIEEDIAKE 102
L +E +E
Sbjct: 158 LELENLTTQE 167
>pdb|1C83|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 6-(Oxalyl-Amino)-1h-Indole-5-Carboxylic
Acid
pdb|1C88|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With
2-(Oxalyl-Amino)-4,5,6,7-Tetrahydro-Thieno[2
3-C]pyridine-3-Carboxylic Acid
pdb|1ECV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 5-Iodo-2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C87|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-Thieno[2,3-
C]pyran-3-Carboxylic Acid
pdb|1C84|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 3-(Oxalyl-Amino)-Naphthalene-2-Carboxlic
Aci
pdb|1C85|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-Benzoic Acid
Length = 298
Score = 26.2 bits (56), Expect = 3.9
Identities = 19/70 (27%), Positives = 35/70 (49%), Gaps = 8/70 (11%)
Query: 38 DKEAKNKAILNLEEEKLALKL-----QVSKNEQTLQDTNTKIASIQKKMSEIKSERELRS 92
+++++ +LN EK +LK Q + E +DTN K+ I + +IK+ +R
Sbjct: 101 EQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISE---DIKTYYTVRQ 157
Query: 93 LNIEEDIAKE 102
L +E +E
Sbjct: 158 LELENLTTQE 167
>pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 79
Score = 26.2 bits (56), Expect = 3.9
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 73 KIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQEDLKKEM 132
K AS +K+ +E +E E ++ A+ER + +R++E + E++ + LKK++
Sbjct: 2 KSASGEKEGNE-NAEEEAAAIEEARREAEERRKEKHRKMEEEREEMRQTIRDKYGLKKKV 60
Query: 133 LE 134
E
Sbjct: 61 KE 62
>pdb|1GFY|A Chain A, Residue 259 Is A Key Determinant Of Substrate Specificity
Of Protein-Tyrosine Phosphatase 1b And Alpha
Length = 298
Score = 26.2 bits (56), Expect = 3.9
Identities = 19/70 (27%), Positives = 35/70 (49%), Gaps = 8/70 (11%)
Query: 38 DKEAKNKAILNLEEEKLALKL-----QVSKNEQTLQDTNTKIASIQKKMSEIKSERELRS 92
+++++ +LN EK +LK Q + E +DTN K+ I + +IK+ +R
Sbjct: 101 EQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISE---DIKTYYTVRQ 157
Query: 93 LNIEEDIAKE 102
L +E +E
Sbjct: 158 LELENLTTQE 167
>pdb|1C86|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
(R47v, D48n) Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-
Thieno[2,3-C]pyran-3-Carboxylic Acid
Length = 298
Score = 26.2 bits (56), Expect = 3.9
Identities = 19/70 (27%), Positives = 35/70 (49%), Gaps = 8/70 (11%)
Query: 38 DKEAKNKAILNLEEEKLALKL-----QVSKNEQTLQDTNTKIASIQKKMSEIKSERELRS 92
+++++ +LN EK +LK Q + E +DTN K+ I + +IK+ +R
Sbjct: 101 EQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISE---DIKTYYTVRQ 157
Query: 93 LNIEEDIAKE 102
L +E +E
Sbjct: 158 LELENLTTQE 167
>pdb|1L8G|A Chain A, Crystal Structure Of Ptp1b Complexed With 7-(1,1-Dioxo-1h-
Benzo[d]isothiazol-3-Yloxymethyl)-2-(Oxalyl-Amino)-4,7-
Dihydro-5h-Thieno[2,3-C]pyran-3-Carboxylic Acid
Length = 321
Score = 26.2 bits (56), Expect = 3.9
Identities = 19/70 (27%), Positives = 35/70 (49%), Gaps = 8/70 (11%)
Query: 38 DKEAKNKAILNLEEEKLALKL-----QVSKNEQTLQDTNTKIASIQKKMSEIKSERELRS 92
+++++ +LN EK +LK Q + E +DTN K+ I + +IK+ +R
Sbjct: 101 EQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISE---DIKTYYTVRQ 157
Query: 93 LNIEEDIAKE 102
L +E +E
Sbjct: 158 LELENLTTQE 167
>pdb|1PTU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Hexa-Peptide
(Dadepyl-Nh2)
pdb|1PTT|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Tetra-Peptide
(Ac-Depyl-Nh2)
Length = 321
Score = 26.2 bits (56), Expect = 3.9
Identities = 19/70 (27%), Positives = 35/70 (49%), Gaps = 8/70 (11%)
Query: 38 DKEAKNKAILNLEEEKLALKL-----QVSKNEQTLQDTNTKIASIQKKMSEIKSERELRS 92
+++++ +LN EK +LK Q + E +DTN K+ I + +IK+ +R
Sbjct: 101 EQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISE---DIKTYYTVRQ 157
Query: 93 LNIEEDIAKE 102
L +E +E
Sbjct: 158 LELENLTTQE 167
>pdb|1H89|A Chain A, Crystal Structure Of Ternary Protein-Dna Complex2
pdb|1H89|B Chain B, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 64
Score = 25.8 bits (55), Expect = 5.1
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 80 KMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKSE 123
KM ++++ ++ L E + +++ Q +RE+ L+N K E
Sbjct: 21 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 64
>pdb|1HX1|B Chain B, Crystal Structure Of A Bag Domain In Complex With The
Hsc70 Atpase Domain
Length = 114
Score = 25.4 bits (54), Expect = 6.7
Identities = 20/107 (18%), Positives = 51/107 (46%), Gaps = 14/107 (13%)
Query: 7 QLIEISHLDKEIDSLEPLIREKRKDL---DKALNDKEAKNKAILNLEEEKLALKLQVSKN 63
+L ++ HL+K ++ + + E K+L + K+ + +A+ L+ +K + +
Sbjct: 9 ELKKLKHLEKSVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRR---VKATIEQF 65
Query: 64 EQTLQDTNTKIASIQKKMSEIKSERELRSL--------NIEEDIAKE 102
+ L++ +T I K S +K + ++ + +E++I +E
Sbjct: 66 MKILEEIDTLILPENFKDSRLKRKGLVKKVQAFLAECDTVEQNICQE 112
>pdb|2SPC|A Chain A, Spectrin (One Repeat Unit)
pdb|2SPC|B Chain B, Spectrin (One Repeat Unit)
Length = 107
Score = 25.4 bits (54), Expect = 6.7
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 20 SLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLA 55
++E LI+ K +D DKA+N E K A+ + ++ +A
Sbjct: 37 NVEALIK-KHEDFDKAINGHEQKIAALQTVADQLIA 71
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 25.4 bits (54), Expect = 6.7
Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Query: 13 HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNT 72
H DSL R K L + K+ L+ EE++L ++Q+ ++ +
Sbjct: 277 HYQHWSDSLSEEGRGLLKKLQIPIEPKKDDIIHSLSQEEKELLKRIQIDSSDFLSTEEKE 336
Query: 73 KIASIQKKMSEIKSERELRSLN-IEEDIAKERSNQANREIENLQNEIK 119
+ +Q + + SE E LN I+ D + S + ++ L+ +I+
Sbjct: 337 FLKKLQIDIRDSLSEEEKELLNRIQVDSSNPLSEKEKEFLKKLKLDIQ 384
>pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1SYNTAXIN 1A COMPLEX
Length = 267
Score = 25.4 bits (54), Expect = 6.7
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 15 DKEIDSLEPLIREKRKDLDK-ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNTK 73
D+ +D + E R +DK A N +E K K A+ + +E+T ++
Sbjct: 27 DRFMDEFFEQVEEIRGFIDKIAENVEEVKRK--------HSAILASPNPDEKTKEELEEL 78
Query: 74 IASIQKKMSEIKSERELRSLNIEEDIAKERSN 105
++ I+K ++++S+ + +IE++ RS+
Sbjct: 79 MSDIKKTANKVRSKLKSIEQSIEQEEGLNRSS 110
>pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From
Bacillus Subtilis
pdb|1M74|A Chain A, Crystal Structure Of Mg-Adp-Bound Seca From Bacillus
Subtilis
Length = 802
Score = 25.4 bits (54), Expect = 6.7
Identities = 19/91 (20%), Positives = 41/91 (44%), Gaps = 20/91 (21%)
Query: 97 EDIAKERSNQANREIENLQNEIKHKSEKQEDLKKEMLELEKLVQQ--------------- 141
+D +S +R +E+ Q ++ + D +K++L+ + +++Q
Sbjct: 564 DDSTPIQSKMVSRAVESSQKRVEGNNF---DSRKQLLQYDDVLRQQREVIYKQRFEVIDS 620
Query: 142 --LESLVENEVKNIKETQQIIFKKKEELVEK 170
L +VEN +K+ E + +EEL E+
Sbjct: 621 ENLREIVENMIKSSLERAIAAYTPREELPEE 651
>pdb|1BR0|A Chain A, Three Dimensional Structure Of The N-Terminal Domain Of
Syntaxin 1a
Length = 120
Score = 25.4 bits (54), Expect = 6.7
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 15 DKEIDSLEPLIREKRKDLDK-ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNTK 73
D+ +D + E R +DK A N +E K K A+ + +E+T ++
Sbjct: 1 DRFMDEFFEQVEEIRGFIDKIAENVEEVKRK--------HSAILASPNPDEKTKEELEEL 52
Query: 74 IASIQKKMSEIKSERELRSLNIEEDIAKERSN 105
++ I+K ++++S+ + +IE++ RS+
Sbjct: 53 MSDIKKTANKVRSKLKSIEQSIEQEEGLNRSS 84
>pdb|1EZ3|A Chain A, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
pdb|1EZ3|B Chain B, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
pdb|1EZ3|C Chain C, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
Length = 127
Score = 25.4 bits (54), Expect = 6.7
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 15 DKEIDSLEPLIREKRKDLDK-ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNTK 73
D+ +D + E R +DK A N +E K K A+ + +E+T ++
Sbjct: 4 DRFMDEFFEQVEEIRGFIDKIAENVEEVKRK--------HSAILASPNPDEKTKEELEEL 55
Query: 74 IASIQKKMSEIKSERELRSLNIEEDIAKERSN 105
++ I+K ++++S+ + +IE++ RS+
Sbjct: 56 MSDIKKTANKVRSKLKSIEQSIEQEEGLNRSS 87
>pdb|1L8D|A Chain A, Rad50 Coiled-Coil Zn Hook
pdb|1L8D|B Chain B, Rad50 Coiled-Coil Zn Hook
Length = 112
Score = 25.4 bits (54), Expect = 6.7
Identities = 24/97 (24%), Positives = 42/97 (42%), Gaps = 17/97 (17%)
Query: 81 MSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQEDLKK---------- 130
M ++ E E + IEE+ N+ + I L+N+I E+LKK
Sbjct: 1 MKKLLEELETKKTTIEEE-----RNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGR 55
Query: 131 EMLELEKLVQQLESLVENEVKNIKETQQIIFKKKEEL 167
E+ + + ++L S ++ N K T + +K EL
Sbjct: 56 ELTDEHR--EELLSKYHLDLNNSKNTLAKLIDRKSEL 90
>pdb|1CI6|B Chain B, Transcription Factor Atf4-CEBP BETA BZIP HETERODIMER
Length = 63
Score = 25.0 bits (53), Expect = 8.7
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 80 KMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIK 119
KM ++++ ++ L E + +++ Q +RE+ L+N K
Sbjct: 22 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 61
>pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8Z|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 966
Score = 25.0 bits (53), Expect = 8.7
Identities = 25/91 (27%), Positives = 43/91 (46%), Gaps = 12/91 (13%)
Query: 89 ELRSLNIEE-DIAKERSNQANREIENLQNEIKHKSEK---QEDLKKEMLELEKLVQQ--- 141
+++SL+ E+ D++ + +Q +++ENLQN +S + LK L +EK
Sbjct: 606 DIKSLSAEKYDVSSQVISQLKQKLENLQNSQLPESFRVPYDPGLKAGALAIEKCKVMASK 665
Query: 142 -----LESLVENEVKNIKETQQIIFKKKEEL 167
LE + ET IIFK ++L
Sbjct: 666 KKPLWLEFKCADPTALSNETIGIIFKHGDDL 696
>pdb|1HE8|A Chain A, Ras G12v - Pi 3-Kinase Gamma Complex
Length = 965
Score = 25.0 bits (53), Expect = 8.7
Identities = 25/91 (27%), Positives = 43/91 (46%), Gaps = 12/91 (13%)
Query: 89 ELRSLNIEE-DIAKERSNQANREIENLQNEIKHKSEK---QEDLKKEMLELEKLVQQ--- 141
+++SL+ E+ D++ + +Q +++ENLQN +S + LK L +EK
Sbjct: 605 DIKSLSAEKYDVSSQVISQLKQKLENLQNSQLPESFRVPYDPGLKAGALAIEKCKVMASK 664
Query: 142 -----LESLVENEVKNIKETQQIIFKKKEEL 167
LE + ET IIFK ++L
Sbjct: 665 KKPLWLEFKCADPTALSNETIGIIFKHGDDL 695
>pdb|1FGJ|A Chain A, X-Ray Structure Of Hydroxylamine Oxidoreductase
pdb|1FGJ|B Chain B, X-Ray Structure Of Hydroxylamine Oxidoreductase
Length = 546
Score = 25.0 bits (53), Expect = 8.7
Identities = 21/92 (22%), Positives = 37/92 (39%), Gaps = 9/92 (9%)
Query: 148 NEVKNIKETQQIIFKKKEELVEKTEPKIYSFYERIRRWAKNTSIVTIKKQACGGCFIRLN 207
++++N+K + +KK + +E+ E +R K T+K+ C C + +N
Sbjct: 103 DKIRNLKSDDPLYYKKGK--LEEVE-------NNLRSMGKLGEKETLKEVGCIDCHVDVN 153
Query: 208 DKIYTEVLTSGDMITCPYCGRILYAEGAYENS 239
K + M T CG E A S
Sbjct: 154 KKDKADHTKDIRMPTADTCGTCHLREFAERES 185
>pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidase Complexed With
Phosphoramidon
Length = 696
Score = 25.0 bits (53), Expect = 8.7
Identities = 38/163 (23%), Positives = 64/163 (38%), Gaps = 16/163 (9%)
Query: 18 IDSLEPLIREKRKDLDKALND--------KEAKNKAILNLEEEKLALKLQVSKNEQTLQD 69
+ SL +E R KAL + N N+E L ++ + ++
Sbjct: 326 VSSLSRTYKESRNAFRKALYGTTSETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHV 385
Query: 70 TNTKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQEDLK 129
IA I++ I++ +L ++ E E A +E ++I K L
Sbjct: 386 VEDLIAQIREVF--IQTLDDLTWMDAETKKRAEEKALAIKERIGYPDDIVSNDNK---LN 440
Query: 130 KEMLELEKLVQQLESLVENEVKNIKETQQIIFKKKEELVEKTE 172
E LEL + + EN ++N+K +Q KK E V+K E
Sbjct: 441 NEYLELN---YKEDEYFENIIQNLKFSQSKQLKKLREKVDKDE 480
>pdb|1EK8|A Chain A, Crystal Structure Of The Ribosome Recycling Factor (Rrf)
From Escherichia Coli
Length = 185
Score = 25.0 bits (53), Expect = 8.7
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 21/92 (22%)
Query: 21 LEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNTKIASIQKK 80
L PL E+RKDL K + + E+ ++A++ +D N K+ ++ K
Sbjct: 102 LPPLTEERRKDLTKIVRGE---------AEQARVAVR-------NVRRDANDKVKALLKD 145
Query: 81 MSEIKSERELRSLNIEEDIAKERSNQANREIE 112
EI + + RS +D ++ ++ A ++IE
Sbjct: 146 -KEISEDDDRRS----QDDVQKLTDAAIKKIE 172
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.308 0.128 0.331
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,277,332
Number of Sequences: 13198
Number of extensions: 48035
Number of successful extensions: 237
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 88
length of query: 254
length of database: 2,899,336
effective HSP length: 86
effective length of query: 168
effective length of database: 1,764,308
effective search space: 296403744
effective search space used: 296403744
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (25.0 bits)