BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645576|ref|NP_207752.1| glycyl-tRNA synthetase,
alpha subunit (glyQ) [Helicobacter pylori 26695]
(303 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1J5W|A Chain A, Crystal Structure Of Glycyl-Trna Synthe... 359 e-100
pdb|1CG6|A Chain A, Structure Of Human 5'-Deoxy-5'-Methylth... 28 1.7
pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (... 26 6.4
pdb|1ASZ|A Chain A, Aspartyl Trna Synthetase (Asprs) (E.C.6... 26 6.4
pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The... 26 6.4
pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex ... 26 6.4
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta >gi|5... 26 6.4
pdb|1DM9|B Chain B, Heat Shock Protein 15 Kd >gi|7245731|pd... 25 8.4
>pdb|1J5W|A Chain A, Crystal Structure Of Glycyl-Trna Synthetase Alpha Chain
(Tm0216) From Thermotoga Maritima At 1.95 A Resolution
pdb|1J5W|B Chain B, Crystal Structure Of Glycyl-Trna Synthetase Alpha Chain
(Tm0216) From Thermotoga Maritima At 1.95 A Resolution
Length = 298
Score = 359 bits (922), Expect = e-100
Identities = 168/276 (60%), Positives = 211/276 (75%), Gaps = 4/276 (1%)
Query: 7 LLLKLQEYWKNQGCLVIQPYDIPAGAGTFHPATLLRSLDKKPWNVAYVAPSRRPTDGRYG 66
++ KL ++W ++GCL+ QPYD GAGTFHPAT SL K PW VAYV PSRRPTDGRYG
Sbjct: 18 VIXKLNDFWASKGCLLEQPYDXEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYG 77
Query: 67 ENPNRLGSYYQFQVVIKPSPSNIQELYLKSLEVLGINLNEHDIRFVEDNWESPTLGAWGL 126
ENPNRL Y+Q+QV+IKPSP N QELYL+SLE LGINL EHDIRFVEDNWESPTLGAWG+
Sbjct: 78 ENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGV 137
Query: 127 GWEVWLDGMEVTQFTYFQQVGGIACSPIPVEITYGLERLAMYVQKVENILEIEWAKKNHD 186
GWEVWLDG E+TQFTYFQQ+GGI+ IP+EITYGLER+A Y+Q V+N+ E++W ++
Sbjct: 138 GWEVWLDGXEITQFTYFQQIGGISLKDIPLEITYGLERIAXYLQGVDNVYEVQW----NE 193
Query: 187 SVNYAQVHLESEYEFSKYHFETASVKRLLEMFKNAQAEALHCLENKLPLPAYDFVMLCSH 246
+V Y V LE+E EFS ++FE A+V L F + E +E L LPAYD+++ CSH
Sbjct: 194 NVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLYLPAYDYILKCSH 253
Query: 247 FFNILDARKAISVAERQNYILQIRDLAKGCALLYKE 282
FN+LDAR AISV++RQ Y+ +I+ A+ A ++ E
Sbjct: 254 TFNLLDARGAISVSQRQTYVKRIQAXARKAARVFLE 289
>pdb|1CG6|A Chain A, Structure Of Human 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-5'-
Methylthioadenosine And Sulfate At 1.7 A Resolution
pdb|1CB0|A Chain A, Structure Of Human 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase At 1.7 A Resolution
Length = 283
Score = 27.7 bits (60), Expect = 1.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 190 YAQVHLESEYEFSKYHFETASVKRLLEMFKNAQAEALHCLENKLP 234
YA + + ++Y+ K H E SV R+L+ K +A L +P
Sbjct: 212 YASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIP 256
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 25.8 bits (55), Expect = 6.4
Identities = 24/107 (22%), Positives = 43/107 (39%), Gaps = 13/107 (12%)
Query: 69 PNRLGSYYQFQVVIKPSPSNIQELYLKSLEVLGINLNEHDIRFVEDNWESPTLGAWGLGW 128
P + +Y P SN + +++ E+L HD +++ ++ L G
Sbjct: 379 PLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGL 438
Query: 129 EVWLDGMEVTQFTYFQQVGGIACSPIPVEITYGLERLAMYVQKVENI 175
+ + DG F+Y C P GLER+ M+ ++NI
Sbjct: 439 KDYCDG-----FSY-------GCPP-HAGGGIGLERVVMFYLDLKNI 472
>pdb|1ASZ|A Chain A, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp) And Atp
pdb|1ASZ|B Chain B, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp) And Atp
pdb|1ASY|A Chain A, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp)
pdb|1ASY|B Chain B, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp)
Length = 490
Score = 25.8 bits (55), Expect = 6.4
Identities = 24/107 (22%), Positives = 43/107 (39%), Gaps = 13/107 (12%)
Query: 69 PNRLGSYYQFQVVIKPSPSNIQELYLKSLEVLGINLNEHDIRFVEDNWESPTLGAWGLGW 128
P + +Y P SN + +++ E+L HD +++ ++ L G
Sbjct: 382 PLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGL 441
Query: 129 EVWLDGMEVTQFTYFQQVGGIACSPIPVEITYGLERLAMYVQKVENI 175
+ + DG F+Y C P GLER+ M+ ++NI
Sbjct: 442 KDYCDG-----FSY-------GCPP-HAGGGIGLERVVMFYLDLKNI 475
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 25.8 bits (55), Expect = 6.4
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 6/145 (4%)
Query: 144 QQVGGIACSPIPVEITYGLERLAMYVQKVENILEIEWAKKNH-DSVNYAQVHLESEYEFS 202
Q V GIAC+ IPV E + V V N E K++ +++ Y ++ E
Sbjct: 111 QCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD 168
Query: 203 KYH-FETASVK--RLLEMFKNAQAEALHCLENKLPLPAYDFVMLCSHFFNILDARKAISV 259
K + TA ++ R E N + A + L N L +F F + +A
Sbjct: 169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228
Query: 260 AERQNYILQIRDLAKGCALLYKEQE 284
+ + + +++L K +L Y+ E
Sbjct: 229 PDTRVRVAALQNLVKIMSLYYQYME 253
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
Length = 442
Score = 25.8 bits (55), Expect = 6.4
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 6/145 (4%)
Query: 144 QQVGGIACSPIPVEITYGLERLAMYVQKVENILEIEWAKKNH-DSVNYAQVHLESEYEFS 202
Q V GIAC+ IPV E + V V N E K++ +++ Y ++ E
Sbjct: 111 QCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD 168
Query: 203 KYH-FETASVK--RLLEMFKNAQAEALHCLENKLPLPAYDFVMLCSHFFNILDARKAISV 259
K + TA ++ R E N + A + L N L +F F + +A
Sbjct: 169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228
Query: 260 AERQNYILQIRDLAKGCALLYKEQE 284
+ + + +++L K +L Y+ E
Sbjct: 229 PDTRVRVAALQNLVKIMSLYYQYME 253
>pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
Length = 462
Score = 25.8 bits (55), Expect = 6.4
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 6/145 (4%)
Query: 144 QQVGGIACSPIPVEITYGLERLAMYVQKVENILEIEWAKKNH-DSVNYAQVHLESEYEFS 202
Q V GIAC+ IPV E + V V N E K++ +++ Y ++ E
Sbjct: 111 QCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD 168
Query: 203 KYH-FETASVK--RLLEMFKNAQAEALHCLENKLPLPAYDFVMLCSHFFNILDARKAISV 259
K + TA ++ R E N + A + L N L +F F + +A
Sbjct: 169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228
Query: 260 AERQNYILQIRDLAKGCALLYKEQE 284
+ + + +++L K +L Y+ E
Sbjct: 229 PDTRVRVAALQNLVKIMSLYYQYME 253
>pdb|1DM9|B Chain B, Heat Shock Protein 15 Kd
pdb|1DM9|A Chain A, Heat Shock Protein 15 Kd
Length = 133
Score = 25.4 bits (54), Expect = 8.4
Identities = 15/38 (39%), Positives = 21/38 (54%)
Query: 266 ILQIRDLAKGCALLYKEQEEEREERLKNALTKAENGVS 303
I + R A ALLY+E E E+R K AL + N ++
Sbjct: 71 ITEQRRPASEAALLYEETAESVEKREKMALARKLNALT 108
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,827,707
Number of Sequences: 13198
Number of extensions: 78398
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 8
length of query: 303
length of database: 2,899,336
effective HSP length: 88
effective length of query: 215
effective length of database: 1,737,912
effective search space: 373651080
effective search space used: 373651080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)