BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644727|ref|NP_206897.1| hypothetical protein
[Helicobacter pylori 26695]
(237 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima 29 0.55
pdb|1K8K|D Chain D, Crystal Structure Of Arp23 COMPLEX 27 1.6
pdb|1F49|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Ncs... 27 2.7
pdb|1BGL|A Chain A, Beta-Galactosidase (Chains A-H) >gi|131... 27 2.7
pdb|1JZ8|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537... 27 2.7
pdb|1F4A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs ... 27 2.7
pdb|1JZ7|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Co... 27 2.7
pdb|1DP0|A Chain A, E. Coli Beta-Galactosidase At 1.7 Angst... 27 2.7
pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.... 25 6.1
>pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima
Length = 419
Score = 28.9 bits (63), Expect = 0.55
Identities = 30/117 (25%), Positives = 53/117 (44%), Gaps = 13/117 (11%)
Query: 43 SKVQLEIAQSKLKGLNESPLVLYVAAQVIEGSPVVFS---RKAISVSINQTNLPVLS--- 96
S++Q E A KLK ++PL ++ +++ +VF+ KA ++I T++ V
Sbjct: 112 SEMQSE-ALEKLKENGKTPLHIFSKRYLLDDERIVFNPLDMKASKIAIEYTSIVVPLKVY 170
Query: 97 ------LRQVMKSSFDFEGILQSFNIAVPTTPIDNVNMITPPMFYYGQGGFLAYNGM 147
L+ +KS F + L S V TTP + ++ + Y G NG+
Sbjct: 171 EMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGV 227
>pdb|1K8K|D Chain D, Crystal Structure Of Arp23 COMPLEX
Length = 300
Score = 27.3 bits (59), Expect = 1.6
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 171 EVMQESRQALKILAINYLKNNTLNVESKAKGGFVVVDTKNLKTPGVVVVKVFLED 225
+ +E ++ I+Y + T+ VESK VV T VV+ KVF+++
Sbjct: 130 QFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQE 184
>pdb|1F49|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|E Chain E, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|F Chain F, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|G Chain G, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|H Chain H, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|I Chain I, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|J Chain J, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|K Chain K, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|L Chain L, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|M Chain M, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|N Chain N, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|O Chain O, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|P Chain P, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1JZ0|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|E Chain E, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|F Chain F, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|G Chain G, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|H Chain H, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ1|I Chain I, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|J Chain J, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|K Chain K, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|L Chain L, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|M Chain M, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|N Chain N, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|O Chain O, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|P Chain P, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JYY|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|E Chain E, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|F Chain F, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|G Chain G, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|H Chain H, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYZ|I Chain I, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|J Chain J, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|K Chain K, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|L Chain L, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|M Chain M, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|N Chain N, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|O Chain O, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|P Chain P, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400
Length = 1023
Score = 26.6 bits (57), Expect = 2.7
Identities = 20/92 (21%), Positives = 41/92 (43%), Gaps = 4/92 (4%)
Query: 138 QGGFLAYNG--MMYGGMGMYG--PGFGMMMMDDVEEQEVMQESRQALKILAINYLKNNTL 193
+ G L NG ++ G+ + P G +M + Q+++ + + ++ N+ L
Sbjct: 338 ENGLLLLNGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPL 397
Query: 194 NVESKAKGGFVVVDTKNLKTPGVVVVKVFLED 225
+ G VVD N++T G+V + +D
Sbjct: 398 WYTLCDRYGLYVVDEANIETHGMVPMNRLTDD 429
>pdb|1BGL|A Chain A, Beta-Galactosidase (Chains A-H)
pdb|1BGL|B Chain B, Beta-Galactosidase (Chains A-H)
pdb|1BGL|C Chain C, Beta-Galactosidase (Chains A-H)
pdb|1BGL|D Chain D, Beta-Galactosidase (Chains A-H)
pdb|1BGL|E Chain E, Beta-Galactosidase (Chains A-H)
pdb|1BGL|F Chain F, Beta-Galactosidase (Chains A-H)
pdb|1BGL|G Chain G, Beta-Galactosidase (Chains A-H)
pdb|1BGL|H Chain H, Beta-Galactosidase (Chains A-H)
pdb|1BGM|I Chain I, Beta-Galactosidase (Chains I-P)
pdb|1BGM|J Chain J, Beta-Galactosidase (Chains I-P)
pdb|1BGM|K Chain K, Beta-Galactosidase (Chains I-P)
pdb|1BGM|L Chain L, Beta-Galactosidase (Chains I-P)
pdb|1BGM|M Chain M, Beta-Galactosidase (Chains I-P)
pdb|1BGM|N Chain N, Beta-Galactosidase (Chains I-P)
pdb|1BGM|O Chain O, Beta-Galactosidase (Chains I-P)
pdb|1BGM|P Chain P, Beta-Galactosidase (Chains I-P)
pdb|1JZ2|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
Length = 1023
Score = 26.6 bits (57), Expect = 2.7
Identities = 20/92 (21%), Positives = 41/92 (43%), Gaps = 4/92 (4%)
Query: 138 QGGFLAYNG--MMYGGMGMYG--PGFGMMMMDDVEEQEVMQESRQALKILAINYLKNNTL 193
+ G L NG ++ G+ + P G +M + Q+++ + + ++ N+ L
Sbjct: 338 ENGLLLLNGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPL 397
Query: 194 NVESKAKGGFVVVDTKNLKTPGVVVVKVFLED 225
+ G VVD N++T G+V + +D
Sbjct: 398 WYTLCDRYGLYVVDEANIETHGMVPMNRLTDD 429
>pdb|1JZ8|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Allolactose
pdb|1JZ8|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Allolactose
pdb|1JZ8|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Allolactose
pdb|1JZ8|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Allolactose
pdb|1JYW|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Pnpg
pdb|1JYW|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Pnpg
pdb|1JYW|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Pnpg
pdb|1JYV|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYN|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYW|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Pnpg
Length = 1023
Score = 26.6 bits (57), Expect = 2.7
Identities = 20/92 (21%), Positives = 41/92 (43%), Gaps = 4/92 (4%)
Query: 138 QGGFLAYNG--MMYGGMGMYG--PGFGMMMMDDVEEQEVMQESRQALKILAINYLKNNTL 193
+ G L NG ++ G+ + P G +M + Q+++ + + ++ N+ L
Sbjct: 338 ENGLLLLNGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPL 397
Query: 194 NVESKAKGGFVVVDTKNLKTPGVVVVKVFLED 225
+ G VVD N++T G+V + +D
Sbjct: 398 WYTLCDRYGLYVVDEANIETHGMVPMNRLTDD 429
>pdb|1F4A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4H|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
Length = 1021
Score = 26.6 bits (57), Expect = 2.7
Identities = 20/92 (21%), Positives = 41/92 (43%), Gaps = 4/92 (4%)
Query: 138 QGGFLAYNG--MMYGGMGMYG--PGFGMMMMDDVEEQEVMQESRQALKILAINYLKNNTL 193
+ G L NG ++ G+ + P G +M + Q+++ + + ++ N+ L
Sbjct: 336 ENGLLLLNGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPL 395
Query: 194 NVESKAKGGFVVVDTKNLKTPGVVVVKVFLED 225
+ G VVD N++T G+V + +D
Sbjct: 396 WYTLCDRYGLYVVDEANIETHGMVPMNRLTDD 427
>pdb|1JZ7|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
Length = 1023
Score = 26.6 bits (57), Expect = 2.7
Identities = 20/92 (21%), Positives = 41/92 (43%), Gaps = 4/92 (4%)
Query: 138 QGGFLAYNG--MMYGGMGMYG--PGFGMMMMDDVEEQEVMQESRQALKILAINYLKNNTL 193
+ G L NG ++ G+ + P G +M + Q+++ + + ++ N+ L
Sbjct: 338 ENGLLLLNGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPL 397
Query: 194 NVESKAKGGFVVVDTKNLKTPGVVVVKVFLED 225
+ G VVD N++T G+V + +D
Sbjct: 398 WYTLCDRYGLYVVDEANIETHGMVPMNRLTDD 429
>pdb|1DP0|A Chain A, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|B Chain B, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|C Chain C, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|D Chain D, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1JZ3|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JYX|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JZ5|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With D-
Galctopyranosyl-1-On
pdb|1JZ5|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With D-
Galctopyranosyl-1-On
pdb|1JZ5|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With D-
Galctopyranosyl-1-On
pdb|1JZ5|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With D-
Galctopyranosyl-1-On
pdb|1JZ4|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ6|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1HN1|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
Length = 1023
Score = 26.6 bits (57), Expect = 2.7
Identities = 20/92 (21%), Positives = 41/92 (43%), Gaps = 4/92 (4%)
Query: 138 QGGFLAYNG--MMYGGMGMYG--PGFGMMMMDDVEEQEVMQESRQALKILAINYLKNNTL 193
+ G L NG ++ G+ + P G +M + Q+++ + + ++ N+ L
Sbjct: 338 ENGLLLLNGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPL 397
Query: 194 NVESKAKGGFVVVDTKNLKTPGVVVVKVFLED 225
+ G VVD N++T G+V + +D
Sbjct: 398 WYTLCDRYGLYVVDEANIETHGMVPMNRLTDD 429
>pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With
The Inhibitor Alpha Amanitin
Length = 1733
Score = 25.4 bits (54), Expect = 6.1
Identities = 15/32 (46%), Positives = 16/32 (49%), Gaps = 9/32 (28%)
Query: 139 GGFLAYNGMMYG----GMGMYG-----PGFGM 161
GGF AY G YG G YG PGFG+
Sbjct: 1506 GGFTAYGGADYGEATSPFGAYGEAPTSPGFGV 1537
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.134 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,269,508
Number of Sequences: 13198
Number of extensions: 48828
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 9
length of query: 237
length of database: 2,899,336
effective HSP length: 85
effective length of query: 152
effective length of database: 1,777,506
effective search space: 270180912
effective search space used: 270180912
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)