BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645577|ref|NP_207753.1| glycerol-3-phosphate
dehydrogenase, NAD(P)+ dependent [Helicobacter pylori 26695]
(312 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JDJ|A Chain A, Crystal Structure Of Leishmania Mexican... 146 3e-36
pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crysta... 28 1.0
pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehy... 27 3.9
pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehy... 27 3.9
pdb|1IEH|A Chain A, Solution Structure Of A Soluble Single-... 27 3.9
pdb|1DXK|A Chain A, Metallo-Beta-Lactamase From Bacillus Ce... 26 5.1
pdb|2BC2|A Chain A, Metallo Beta-Lactamase Ii From Bacillus... 26 5.1
pdb|1BMC| Structure Of A Zinc Metallo-Beta-Lactamase From... 26 5.1
pdb|1BVT|A Chain A, Metallo-Beta-Lactamase From Bacillus Ce... 26 5.1
pdb|1LLD|A Chain A, L-Lactate Dehydrogenase (E.C.1.1.1.27) ... 26 5.1
pdb|1KUT|A Chain A, Structural Genomics, Protein Tm1243, (S... 26 6.7
>pdb|1JDJ|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase In Complex With 2-Fluoro-6-
Chloropurine
pdb|1EVZ|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase In Complex With Nad
pdb|1EVY|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase
Length = 366
Score = 146 bits (369), Expect = 3e-36
Identities = 108/325 (33%), Positives = 173/325 (53%), Gaps = 21/325 (6%)
Query: 5 VFGGGAWGRALAFAFGEK-NEVKI--ISRRDLNEPLKKLNDALISKGSAPIEQV----DL 57
VFG GA+G ALA +K EV + ++ ++ +K + L KG + D+
Sbjct: 20 VFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDV 79
Query: 58 QRGLK-ATLYVIAISVQHLREWFQNA-------SLPKNAKVLIASKGIEVLNKAFVSEIA 109
++ A + + I Q LR +F+ + + K VL+ +KGIE F +EI
Sbjct: 80 EKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEII 139
Query: 110 KDFIDPNSLCFLAGPSFAAEIIQGLPCALVIHSN--NQALALEFANKTP--SFIRAYAQQ 165
+F+ L LAGPSFA E+ G+ + I S N A L+ T SF+ +A
Sbjct: 140 GEFLPSPLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFV-CWATT 198
Query: 166 DIIGGEIAGAYKNVIAIAGGVCDGLKLGNSAKASLLSRGLVEMQRFGAFFGGKTETFLGL 225
D +G E+A A KNV+AI GV +GL +G +A+A+L+ RGL+E++ A GG GL
Sbjct: 199 DTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGL 258
Query: 226 SGAGDLFLTANSILSRNYRVGLGLAQNKPLEVVLEELGEVAEGVKTTNAIVEIARKYGIY 285
+G GDL LT +S LSRN+ VG L + P+E + VAEGV T + ++ +A++ +
Sbjct: 259 AGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVATADPLMRLAKQLKVK 318
Query: 286 TPIASEL-ALLLKGKSVLESMNDLI 309
P+ ++ ++ K K+ +++ DL+
Sbjct: 319 MPLCHQIYEIVYKKKNPRDALADLL 343
>pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crystal Structure
Length = 681
Score = 28.5 bits (62), Expect = 1.0
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 158 FIRAYAQQDIIGGEIAGAYKNVIAIAGGVCDG-------LKLGNSAKASLLSRGL 205
F + ++ I+ E+ Y+N+I GG DG L+ + KA L+SRGL
Sbjct: 624 FHSCFKKEGIMNPEVGMKYRNLILKPGGSLDGMDMLQNFLQREPNQKAFLMSRGL 678
>pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 26.6 bits (57), Expect = 3.9
Identities = 29/117 (24%), Positives = 51/117 (42%), Gaps = 8/117 (6%)
Query: 1 MEIAVFGGGAWGRALAFAFGEKNEVKIISRRDLNEPLKKLNDALISKGSAPIEQVDLQRG 60
M+IAV G G G +L +NEV I+ L + K+N+ G +PI+ ++
Sbjct: 1 MKIAVAGSGYVGLSLGVLLSLQNEVTIVD--ILPSKVDKINN-----GLSPIQDEYIEYY 53
Query: 61 LKATLYVIAISVQHLREWFQNASLPKNAKVLIASKGIEVLNKAFVSEIAKDFIDPNS 117
LK+ I ++ + ++ A L A + I + V + K+ + NS
Sbjct: 54 LKSKQLSIKATLDS-KAAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNS 109
>pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 26.6 bits (57), Expect = 3.9
Identities = 29/117 (24%), Positives = 51/117 (42%), Gaps = 8/117 (6%)
Query: 1 MEIAVFGGGAWGRALAFAFGEKNEVKIISRRDLNEPLKKLNDALISKGSAPIEQVDLQRG 60
M+IAV G G G +L +NEV I+ L + K+N+ G +PI+ ++
Sbjct: 1 MKIAVAGSGYVGLSLGVLLSLQNEVTIVD--ILPSKVDKINN-----GLSPIQDEYIEYY 53
Query: 61 LKATLYVIAISVQHLREWFQNASLPKNAKVLIASKGIEVLNKAFVSEIAKDFIDPNS 117
LK+ I ++ + ++ A L A + I + V + K+ + NS
Sbjct: 54 LKSKQLSIKATLDS-KAAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNS 109
>pdb|1IEH|A Chain A, Solution Structure Of A Soluble Single-Domain Antibody
With Hydrophobic Residues Typical Of A VlVH INTERFACE
Length = 135
Score = 26.6 bits (57), Expect = 3.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 4 AVFGGGA---WGRALAFAFGEKNEVKIISRRDLN 34
A + GGA WG+ ++E K+IS DLN
Sbjct: 97 AKYSGGALDAWGQGTQVTVSSQSEQKLISEEDLN 130
>pdb|1DXK|A Chain A, Metallo-Beta-Lactamase From Bacillus Cereus 569H9 C168S
Mutant
Length = 227
Score = 26.2 bits (56), Expect = 5.1
Identities = 10/36 (27%), Positives = 22/36 (60%)
Query: 79 FQNASLPKNAKVLIASKGIEVLNKAFVSEIAKDFID 114
F ++P N VL SKG+ +++ ++ ++ K+ I+
Sbjct: 34 FNGEAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIE 69
>pdb|2BC2|A Chain A, Metallo Beta-Lactamase Ii From Bacillus Cereus 569H9 AT Ph
6.0, Trigonal Crystal Form
pdb|2BC2|B Chain B, Metallo Beta-Lactamase Ii From Bacillus Cereus 569H9 AT Ph
6.0, Trigonal Crystal Form
pdb|3BC2| Metallo Beta-Lactamase Ii From Bacillus Cereus 569H9 AT Ph 6.0,
Monoclinic Crystal Form
Length = 227
Score = 26.2 bits (56), Expect = 5.1
Identities = 10/36 (27%), Positives = 22/36 (60%)
Query: 79 FQNASLPKNAKVLIASKGIEVLNKAFVSEIAKDFID 114
F ++P N VL SKG+ +++ ++ ++ K+ I+
Sbjct: 34 FNGEAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIE 69
>pdb|1BMC| Structure Of A Zinc Metallo-Beta-Lactamase From Bacillus Cereus
Length = 221
Score = 26.2 bits (56), Expect = 5.1
Identities = 10/36 (27%), Positives = 22/36 (60%)
Query: 79 FQNASLPKNAKVLIASKGIEVLNKAFVSEIAKDFID 114
F ++P N VL SKG+ +++ ++ ++ K+ I+
Sbjct: 28 FNGEAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIE 63
>pdb|1BVT|A Chain A, Metallo-Beta-Lactamase From Bacillus Cereus 569H9
pdb|1BC2|A Chain A, Zn-Dependent Metallo-Beta-Lactamase From Bacillus Cereus
pdb|1BC2|B Chain B, Zn-Dependent Metallo-Beta-Lactamase From Bacillus Cereus
Length = 227
Score = 26.2 bits (56), Expect = 5.1
Identities = 10/36 (27%), Positives = 22/36 (60%)
Query: 79 FQNASLPKNAKVLIASKGIEVLNKAFVSEIAKDFID 114
F ++P N VL SKG+ +++ ++ ++ K+ I+
Sbjct: 34 FNGEAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIE 69
>pdb|1LLD|A Chain A, L-Lactate Dehydrogenase (E.C.1.1.1.27) (T-State) Mutant
With Cys 199 Replaced By Ser (C199s) Complex With Nadh
pdb|1LLD|B Chain B, L-Lactate Dehydrogenase (E.C.1.1.1.27) (T-State) Mutant
With Cys 199 Replaced By Ser (C199s) Complex With Nadh
pdb|1LTH|R Chain R, Regular Mixture Of 1:1 Complex Of T- And R- State
Tetramers Of L-Lactate Dehydrogenase (E.C.1.1.1.27)
Mutant With Cys 199 Replaced By Ser (C199s)
pdb|1LTH|T Chain T, Regular Mixture Of 1:1 Complex Of T- And R- State
Tetramers Of L-Lactate Dehydrogenase (E.C.1.1.1.27)
Mutant With Cys 199 Replaced By Ser (C199s)
Length = 319
Score = 26.2 bits (56), Expect = 5.1
Identities = 18/59 (30%), Positives = 26/59 (43%), Gaps = 12/59 (20%)
Query: 2 EIAVFGGGAWGRALAFAFGEKNEVKIISRRDLNEPLKKLNDALISKGSAPIEQVDLQRG 60
++AV G GA G LAFA ++ + I D I+K E +D+Q G
Sbjct: 9 KLAVIGAGAVGSTLAFAAAQRGIAREIVLED------------IAKERVEAEVLDMQHG 55
>pdb|1KUT|A Chain A, Structural Genomics, Protein Tm1243, (Saicar Synthetase)
pdb|1KUT|B Chain B, Structural Genomics, Protein Tm1243, (Saicar Synthetase)
Length = 230
Score = 25.8 bits (55), Expect = 6.7
Identities = 13/30 (43%), Positives = 18/30 (59%), Gaps = 2/30 (6%)
Query: 17 FAFGEKNEV--KIISRRDLNEPLKKLNDAL 44
F +K E+ K + RRDL +PLKK + L
Sbjct: 192 FRLRKKGEIFDKDVYRRDLGDPLKKYREVL 221
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,615,308
Number of Sequences: 13198
Number of extensions: 63394
Number of successful extensions: 159
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 11
length of query: 312
length of database: 2,899,336
effective HSP length: 88
effective length of query: 224
effective length of database: 1,737,912
effective search space: 389292288
effective search space used: 389292288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)