BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645578|ref|NP_207754.1| acyl carrier protein (acpP)
[Helicobacter pylori 26695]
(153 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HY8|A Chain A, Solution Structure Of B. Subtilis Acyl ... 75 3e-15
pdb|1F80|E Chain E, Holo-(Acyl Carrier Protein) Synthase In... 74 1e-14
pdb|1ACP| Acyl Carrier Protein (Nmr, 2 Structures) 73 1e-14
pdb|1KLP|A Chain A, The Solution Structure Of Acyl Carrier ... 58 4e-10
pdb|1AF8| Actinorhodin Polyketide Synthase Acyl Carrier P... 27 0.79
pdb|1B8A|A Chain A, Aspartyl-Trna Synthetase >gi|4388837|pd... 27 1.4
pdb|1K7H|A Chain A, Crystal Structure Of Shrimp Alkaline Ph... 26 2.3
pdb|1KWM|A Chain A, Human Procarboxypeptidase B: Three-Dime... 25 3.0
pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonucle... 25 5.2
pdb|1IRE|A Chain A, Crystal Structure Of Co-Type Nitrile Hy... 25 5.2
>pdb|1HY8|A Chain A, Solution Structure Of B. Subtilis Acyl Carrier Protein
Length = 76
Score = 75.1 bits (183), Expect = 3e-15
Identities = 38/74 (51%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 79 NSFETIQSVIAEQLNVDAVQVTPEAEFVKDLGADS-DVVELIMALEEKFGIEIPDEQAEK 137
++ E + +I ++L VD V EA F +DLGADS DVVEL+M LE++F +EI DE AEK
Sbjct: 2 DTLERVTKIIVDRLGVDEADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAEK 61
Query: 138 IVNVGDVMRYIEKQ 151
I VGD + YI+ Q
Sbjct: 62 IATVGDAVNYIQNQ 75
>pdb|1F80|E Chain E, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo-
(Acyl Carrier Protein)
pdb|1F80|D Chain D, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo-
(Acyl Carrier Protein)
pdb|1F80|F Chain F, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo-
(Acyl Carrier Protein)
Length = 81
Score = 73.6 bits (179), Expect = 1e-14
Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 79 NSFETIQSVIAEQLNVDAVQVTPEAEFVKDLGADS-DVVELIMALEEKFGIEIPDEQAEK 137
++ E + +I ++L VD V EA F +DLGAD DVVEL+M LE++F +EI DE AEK
Sbjct: 7 DTLERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEK 66
Query: 138 IVNVGDVMRYIEKQ 151
I VGD + YI+ Q
Sbjct: 67 IATVGDAVNYIQNQ 80
>pdb|1ACP| Acyl Carrier Protein (Nmr, 2 Structures)
Length = 77
Score = 73.2 bits (178), Expect = 1e-14
Identities = 39/68 (57%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 82 ETIQSVIAEQLNVDAVQVTPEAEFVKDLGADS-DVVELIMALEEKFGIEIPDEQAEKIVN 140
E ++ +I EQL V +VT A FV+DLGADS D VEL+MALEE+F EIPDE+AEKI
Sbjct: 5 ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 64
Query: 141 VGDVMRYI 148
V + YI
Sbjct: 65 VQAAIDYI 72
>pdb|1KLP|A Chain A, The Solution Structure Of Acyl Carrier Protein From
Mycobacterium Tuberculosis
Length = 115
Score = 58.2 bits (139), Expect = 4e-10
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 84 IQSVIAEQLNVDAVQVTPEAEFVKDLGADS-DVVELIMALEEKFGIEIPDEQAEKIVNVG 142
I +I E ++ ++TPE FV DL DS +VE+ + E+K+G++IPDE + VG
Sbjct: 12 IAEIIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVG 71
Query: 143 DVMRYIEK 150
DV+ YI+K
Sbjct: 72 DVVAYIQK 79
>pdb|1AF8| Actinorhodin Polyketide Synthase Acyl Carrier Protein From
Streptomyces Coelicolor A3(2), Nmr, 24 Structures
pdb|2AF8| Actinorhodin Polyketide Synthase Acyl Carrier Protein From
Streptomyces Coelicolor A3(2), Nmr, Minimized Average
Structure
Length = 86
Score = 27.3 bits (59), Expect = 0.79
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 107 KDLGADS-DVVELIMALEEKFGIEIPDEQAEKI 138
+D+G DS ++E LE ++G+ IPD+ A ++
Sbjct: 36 EDIGYDSLALMETAARLESRYGVSIPDDVAGRV 68
>pdb|1B8A|A Chain A, Aspartyl-Trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-Trna Synthetase
Length = 438
Score = 26.6 bits (57), Expect = 1.4
Identities = 25/76 (32%), Positives = 35/76 (45%), Gaps = 11/76 (14%)
Query: 86 SVIAEQLNVDAVQVTPEAEFVKDLGA-------DSDVVELIMALEEKFGIE----IPDEQ 134
S I E+LN V+V VKDLG D D + I A ++K E IP +
Sbjct: 8 SEITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLR 67
Query: 135 AEKIVNVGDVMRYIEK 150
+E +V V V+ + K
Sbjct: 68 SEDVVAVEGVVNFTPK 83
>pdb|1K7H|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase
pdb|1K7H|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase
Length = 476
Score = 25.8 bits (55), Expect = 2.3
Identities = 9/22 (40%), Positives = 16/22 (71%)
Query: 14 RVNQGGVWGSFKRKFLSWADDD 35
R+ +GG+ G F+R+ +SW + D
Sbjct: 48 RIYKGGLTGKFEREKISWEEFD 69
>pdb|1KWM|A Chain A, Human Procarboxypeptidase B: Three-Dimensional Structure
And Implications For Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|1KWM|B Chain B, Human Procarboxypeptidase B: Three-Dimensional Structure
And Implications For Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
Length = 402
Score = 25.4 bits (54), Expect = 3.0
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 56 KLREWRRTKNQQNNNKTFNTNDTNSFETIQSVIAEQLN-VDAVQVTPEAEFVKDLGADSD 114
K R WR+T++ + T+ +F+ I N D P AE K+ A +D
Sbjct: 214 KSRFWRKTRSTHTGSSCIGTDPNRNFDAGWCEIGASRNPCDETYCGPAAESEKETKALAD 273
Query: 115 VV 116
+
Sbjct: 274 FI 275
>pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
pdb|1EKE|A Chain A, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
Length = 230
Score = 24.6 bits (52), Expect = 5.2
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 17/104 (16%)
Query: 2 IEENYKEERYTERVNQGGVWGSFKRKFLSWADDDAGYDEEKDYENLLNNEKLQKKLREWR 61
IE+ +EE V KR +L ++ GY E++ +L E++
Sbjct: 25 IEKEREEELKKLGVKDSKELTKNKRAYLKKLLENLGYVEKR----ILEAEEI-------- 72
Query: 62 RTKNQQNNNKTFNTNDTNSFETIQSVIAEQLNV--DAVQVTPEA 103
NQ N+ N + N+F + + E+LN+ D +++ +A
Sbjct: 73 ---NQLXNSINLNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDA 113
>pdb|1IRE|A Chain A, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudonocardia Thermophila
Length = 204
Score = 24.6 bits (52), Expect = 5.2
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 122 LEEKFGIEIPDEQAEKIVNVGDVMRYI 148
L+E+FG E+P + K+ + MR++
Sbjct: 143 LKEEFGFEVPPSKEIKVWDSSSEMRFV 169
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.311 0.131 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 965,208
Number of Sequences: 13198
Number of extensions: 40701
Number of successful extensions: 94
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 10
length of query: 153
length of database: 2,899,336
effective HSP length: 80
effective length of query: 73
effective length of database: 1,843,496
effective search space: 134575208
effective search space used: 134575208
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)