BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645579|ref|NP_207755.1| hypothetical protein
[Helicobacter pylori 26695]
(447 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermo... 31 0.32
pdb|1TFE| Dimerization Domain Of Ef-Ts From T. Thermophilus 31 0.32
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved... 28 1.6
pdb|1FNB| Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Red... 28 2.1
pdb|1BX1|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferred... 28 2.7
pdb|1FRN| Ferredoxin: Nadp+ Oxidoreductase (Ferredoxin Re... 28 2.7
pdb|1BX0|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferred... 28 2.7
pdb|1M1J|A Chain A, Crystal Structure Of Native Chicken Fib... 28 2.7
pdb|1EI3|A Chain A, Crystal Structure Of Native Chicken Fib... 28 2.7
pdb|1FRQ|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferred... 28 2.7
pdb|1L4A|A Chain A, X-Ray Structure Of The Neuronal Complex... 28 2.7
pdb|1A0E|A Chain A, Xylose Isomerase From Thermotoga Neapol... 27 4.7
pdb|1IPA|A Chain A, Crystal Structure Of Rna 2'-O Ribose Me... 27 6.1
pdb|1KIL|A Chain A, Three-Dimensional Structure Of The Comp... 26 8.0
pdb|1SFC|A Chain A, Neuronal Synaptic Fusion Complex >gi|67... 26 8.0
>pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|G Chain G, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|H Chain H, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|D Chain D, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 196
Score = 30.8 bits (68), Expect = 0.32
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 241 EIHEDDLEYLQELYEEGKQVFIVLSRADRRTKRQLEEVVIKIKETLKDNGIE 292
E+ ++ Y+Q EGK I A+ R K+ LEEVV+ + +KD+ ++
Sbjct: 117 ELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVK 168
>pdb|1TFE| Dimerization Domain Of Ef-Ts From T. Thermophilus
Length = 145
Score = 30.8 bits (68), Expect = 0.32
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 241 EIHEDDLEYLQELYEEGKQVFIVLSRADRRTKRQLEEVVIKIKETLKDNGIE 292
E+ ++ Y+Q EGK I A+ R K+ LEEVV+ + +KD+ ++
Sbjct: 63 ELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVK 114
>pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
Length = 301
Score = 28.5 bits (62), Expect = 1.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 104 VAVGGGFSAGKSTFLNNLLGLKLKLPEDMNPTT 136
+A+ G + GKST LN LLG K+ + TT
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTT 43
>pdb|1FNB| Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase,
Flavoenzyme) (E.C.1.18.1.2)
pdb|1FNC| Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase,
Flavoenzyme) (E.C.1.18.1.2) (Dithionite-Reduced)
pdb|1FND| Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase,
Flavoenzyme) (E.C.1.18.1.2) Complexed With
Adenosine-2',5'-Diphosphate
Length = 314
Score = 28.1 bits (61), Expect = 2.1
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 287 KDNGIE--FLGIGAYSSTRYQEYKEFSEKSKVFNSLEEFLMKLNQRSEKQNEILGYLYEV 344
K NG+ FLG+ SS Y+E E ++ N +F + Q +EK + +Y
Sbjct: 193 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEK----MYIQ 248
Query: 345 HSMYEKAIEQDANQFKRYQSELHSVRLDLMQKGFDD 380
M + A+E K+ + ++ L M+KG DD
Sbjct: 249 TRMAQYAVEL-WEMLKKDNTYVYMCGLKGMEKGIDD 283
>pdb|1BX1|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
Mutant E312q
Length = 314
Score = 27.7 bits (60), Expect = 2.7
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 287 KDNGIE--FLGIGAYSSTRYQEYKEFSEKSKVFNSLEEFLMKLNQRSEKQNEILGYLYEV 344
K NG+ FLG+ SS Y+E E ++ N +F + Q +EK + +Y
Sbjct: 193 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEK----MYIQ 248
Query: 345 HSMYEKAIEQDANQFKRYQSELHSVRLDLMQKGFDD 380
M + A+E K+ + + L M+KG DD
Sbjct: 249 TRMAQYAVEL-WEMLKKDNTYFYMCGLKGMEKGIDD 283
>pdb|1FRN| Ferredoxin: Nadp+ Oxidoreductase (Ferredoxin Reductase)
(E.C.1.18.1.2) Mutant With Ser 96 Replaced By Val And
Recombinant Variant With Phe As Residue 269 (S96v,269f)
Length = 314
Score = 27.7 bits (60), Expect = 2.7
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 287 KDNGIE--FLGIGAYSSTRYQEYKEFSEKSKVFNSLEEFLMKLNQRSEKQNEILGYLYEV 344
K NG+ FLG+ SS Y+E E ++ N +F + Q +EK + +Y
Sbjct: 193 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEK----MYIQ 248
Query: 345 HSMYEKAIEQDANQFKRYQSELHSVRLDLMQKGFDD 380
M + A+E K+ + + L M+KG DD
Sbjct: 249 TRMAQYAVEL-WEMLKKDNTYFYMCGLKGMEKGIDD 283
>pdb|1BX0|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
Mutant E312l
Length = 314
Score = 27.7 bits (60), Expect = 2.7
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 287 KDNGIE--FLGIGAYSSTRYQEYKEFSEKSKVFNSLEEFLMKLNQRSEKQNEILGYLYEV 344
K NG+ FLG+ SS Y+E E ++ N +F + Q +EK + +Y
Sbjct: 193 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEK----MYIQ 248
Query: 345 HSMYEKAIEQDANQFKRYQSELHSVRLDLMQKGFDD 380
M + A+E K+ + + L M+KG DD
Sbjct: 249 TRMAQYAVEL-WEMLKKDNTYFYMCGLKGMEKGIDD 283
>pdb|1M1J|A Chain A, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|D Chain D, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
Length = 491
Score = 27.7 bits (60), Expect = 2.7
Identities = 12/49 (24%), Positives = 26/49 (52%)
Query: 374 MQKGFDDFSDKIFRRIENLEKEFSEQERSKRESLARLNEVIDLFKEGID 422
MQ DD +RI+N+ ++ ++ + + S + E I++ K G++
Sbjct: 52 MQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLE 100
>pdb|1EI3|A Chain A, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|D Chain D, Crystal Structure Of Native Chicken Fibrinogen
Length = 491
Score = 27.7 bits (60), Expect = 2.7
Identities = 12/49 (24%), Positives = 26/49 (52%)
Query: 374 MQKGFDDFSDKIFRRIENLEKEFSEQERSKRESLARLNEVIDLFKEGID 422
MQ DD +RI+N+ ++ ++ + + S + E I++ K G++
Sbjct: 52 MQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLE 100
>pdb|1FRQ|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
Mutant E312a
Length = 314
Score = 27.7 bits (60), Expect = 2.7
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 287 KDNGIE--FLGIGAYSSTRYQEYKEFSEKSKVFNSLEEFLMKLNQRSEKQNEILGYLYEV 344
K NG+ FLG+ SS Y+E E ++ N +F + Q +EK + +Y
Sbjct: 193 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEK----MYIQ 248
Query: 345 HSMYEKAIEQDANQFKRYQSELHSVRLDLMQKGFDD 380
M + A+E K+ + + L M+KG DD
Sbjct: 249 TRMAQYAVEL-WEMLKKDNTYFYMCGLKGMEKGIDD 283
>pdb|1L4A|A Chain A, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 80
Score = 27.7 bits (60), Expect = 2.7
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 398 EQERSKRESLARLNEVIDLFKEGIDKVFDRVS 429
+Q + +++ A++ EV+D+ + +DKV +R S
Sbjct: 12 QQSKRLQQTQAQVEEVVDIMRVNVDKVLERDS 43
>pdb|1A0E|A Chain A, Xylose Isomerase From Thermotoga Neapolitana
pdb|1A0E|D Chain D, Xylose Isomerase From Thermotoga Neapolitana
Length = 443
Score = 26.9 bits (58), Expect = 4.7
Identities = 11/26 (42%), Positives = 19/26 (72%)
Query: 269 RRTKRQLEEVVIKIKETLKDNGIEFL 294
R T + L++VV +IKE +KD+ ++ L
Sbjct: 112 RETNKILDKVVERIKERMKDSNVKLL 137
>pdb|1IPA|A Chain A, Crystal Structure Of Rna 2'-O Ribose Methyltransferase
Length = 274
Score = 26.6 bits (57), Expect = 6.1
Identities = 15/56 (26%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
Query: 253 LYEEGKQVFIVLSRADRRTKRQLEEVVIKIKETLKDNGIEFLGIGAYSSTRYQEYK 308
L E +QV+ L R R ++ E V+K K +++DN + + +EY+
Sbjct: 57 LNPEEQQVYAALGRVGRLALLEVSEAVLK-KLSVRDNPAGLIALARMPERTLEEYR 111
>pdb|1KIL|A Chain A, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 66
Score = 26.2 bits (56), Expect = 8.0
Identities = 9/27 (33%), Positives = 20/27 (73%)
Query: 401 RSKRESLARLNEVIDLFKEGIDKVFDR 427
R +++ A+++EV+D+ + +DKV +R
Sbjct: 4 RRLQQTQAQVDEVVDIMRVNVDKVLER 30
>pdb|1SFC|A Chain A, Neuronal Synaptic Fusion Complex
pdb|1SFC|E Chain E, Neuronal Synaptic Fusion Complex
pdb|1SFC|I Chain I, Neuronal Synaptic Fusion Complex
Length = 96
Score = 26.2 bits (56), Expect = 8.0
Identities = 9/27 (33%), Positives = 20/27 (73%)
Query: 401 RSKRESLARLNEVIDLFKEGIDKVFDR 427
R +++ A+++EV+D+ + +DKV +R
Sbjct: 30 RRLQQTQAQVDEVVDIMRVNVDKVLER 56
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.136 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,551,561
Number of Sequences: 13198
Number of extensions: 108578
Number of successful extensions: 267
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 15
length of query: 447
length of database: 2,899,336
effective HSP length: 91
effective length of query: 356
effective length of database: 1,698,318
effective search space: 604601208
effective search space used: 604601208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)