BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645580|ref|NP_207756.1| hypothetical protein
[Helicobacter pylori 26695]
(363 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 33 0.051
pdb|1CII| Colicin Ia 29 0.73
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 29 0.96
pdb|1IK9|A Chain A, Crystal Structure Of A Xrcc4-Dna Ligase... 29 0.96
pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Hist... 28 1.3
pdb|1G6U|A Chain A, Crystal Structure Of A Domain Swapped D... 28 1.3
pdb|1CIY| Insecticidal Toxin: Structure And Channel Forma... 28 2.1
pdb|1ATT|A Chain A, Antithrombin Iii (Atiii) (Synchrotron R... 27 2.8
pdb|1ATT|B Chain B, Antithrombin Iii (Atiii) (Synchrotron R... 27 2.8
pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin... 27 3.6
pdb|1AKW| G61l Oxidized Flavodoxin Mutant 27 4.8
pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotox... 26 6.2
pdb|1DP4|C Chain C, Dimerized Hormone Binding Domain Of The... 26 6.2
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 33.1 bits (74), Expect = 0.051
Identities = 36/145 (24%), Positives = 69/145 (46%), Gaps = 7/145 (4%)
Query: 10 QRLPPDAFNSVDKSEESLLFLSNMGAIKERLEKAASRKEEIISQRLQDYAQSQANNLHNL 69
Q P+AFN +DK E + LS + +K++ + K E I Q Q ++ S + L
Sbjct: 234 QLYAPEAFNYMDKFNEQEINLS-LEELKDQRMLSRYEKWEKIKQHYQHWSDSLSEEGRGL 292
Query: 70 IAQLFQDLEDEKKRVKNADMGAIKKQIEAYEKLSGNIEIGFREAYEEFIFHFIKNTRDGL 129
+ +L +E +K + ++ + +K++ ++ + + E +EF+ + RD L
Sbjct: 293 LKKLQIPIEPKKDDIIHS-LSQEEKELLKRIQIDSSDFLSTEE--KEFLKKLQIDIRDSL 349
Query: 130 NE---TLTKAIQKASALAREEEEEE 151
+E L IQ S+ E+E+E
Sbjct: 350 SEEEKELLNRIQVDSSNPLSEKEKE 374
>pdb|1CII| Colicin Ia
Length = 602
Score = 29.3 bits (64), Expect = 0.73
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 297 RNFESEAKKDVKGYIQGLREALERQNFASDTLQKLKENMQNLQNQVQNKEQSIAQLDAQI 356
RN + A+ V L Q A+D L L + +N++NQ+ Q IA+ +
Sbjct: 362 RNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQ 421
Query: 357 QALK 360
LK
Sbjct: 422 DELK 425
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 28.9 bits (63), Expect = 0.96
Identities = 29/129 (22%), Positives = 62/129 (47%), Gaps = 6/129 (4%)
Query: 223 KELYAKVFSQLREIISDDLIDEVAFQKSVMAVLDSIEFKEFDYTDKLPSEIRGKTGFLKG 282
++L K + + R+ I + I + + KS ++ D+I + T+K E + +K
Sbjct: 441 QDLKKKYYEEPRKGIQAEEILQT-YLKSKESMTDAILQTDQTLTEK---EKEIEVERVKA 496
Query: 283 DEADAFIQSVGNYVRNFESEAKKDVKGYIQGLREALERQNFASDTLQKLKENMQNLQNQV 342
+ A A + + R E ++ + Y + L++ E+ +D +Q LKE + L ++
Sbjct: 497 ESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKME--NDRVQLLKEQERTLALKL 554
Query: 343 QNKEQSIAQ 351
Q +EQ + +
Sbjct: 555 QEQEQLLKE 563
>pdb|1IK9|A Chain A, Crystal Structure Of A Xrcc4-Dna Ligase Iv Complex
pdb|1IK9|B Chain B, Crystal Structure Of A Xrcc4-Dna Ligase Iv Complex
Length = 213
Score = 28.9 bits (63), Expect = 0.96
Identities = 33/124 (26%), Positives = 49/124 (38%), Gaps = 24/124 (19%)
Query: 38 ERLEKAASRKEEIISQRLQDYAQSQANNLHNLIAQLFQDLEDEKKRVKNADMGAIKKQIE 97
E++E A E+I+ L A++QA N H Q + R N G +K +
Sbjct: 114 EKVENPAEVIRELIAYALDTIAENQAKNEH------LQKENERLLRDWNDVQGRFEKAVS 167
Query: 98 AYEKLSGNIEIGFREAYEEFIFHFIKNTRDGLNETLTKAIQKASALAREEEEEERYTERV 157
A E L ++ Y+ FI LNE TK + L +E E+ +
Sbjct: 168 AKEALETDL-------YKRFIL--------VLNEKKTKIRSLHNKLLNAAQEREK---DI 209
Query: 158 KQGG 161
KQ G
Sbjct: 210 KQEG 213
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
Length = 420
Score = 28.5 bits (62), Expect = 1.3
Identities = 33/138 (23%), Positives = 68/138 (48%), Gaps = 14/138 (10%)
Query: 230 FSQLREIISDDLIDEVAFQKSVMAVLDSIEFK--EFDYTDKLPSEIRGKTGFLKGDEADA 287
++ L E++ + F S+ +L ++E + E D + L I GD+AD
Sbjct: 289 YNGLLELLDGPSETGIGFALSIERLLLALEEEGIELDIEENLDLFI-----VTMGDQADR 343
Query: 288 FIQSVGNYVRNFESEAKKD-VKGYIQGLREALERQNFASDTL----QKLKENMQNLQNQV 342
+ + N++R+ +A KD ++ I+G + +R A T+ Q+L+ N +++N
Sbjct: 344 YAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLG-AKFTIVIGDQELENNKIDVKNMT 402
Query: 343 QNKEQSIAQLDAQIQALK 360
+ ++I +LDA ++ K
Sbjct: 403 TGESETI-ELDALVEYFK 419
>pdb|1G6U|A Chain A, Crystal Structure Of A Domain Swapped Dimer
pdb|1G6U|B Chain B, Crystal Structure Of A Domain Swapped Dimer
Length = 48
Score = 28.5 bits (62), Expect = 1.3
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Query: 316 EALERQNFASDTLQKLKENMQNLQNQVQNKEQSIAQLDAQIQALKG 361
+AL+++ F+ + L L+ +Q L E+ +A L +++QALKG
Sbjct: 10 QALKKEGFSPEELAALESELQAL-------EKKLAALKSKLQALKG 48
>pdb|1CIY| Insecticidal Toxin: Structure And Channel Formation
Length = 590
Score = 27.7 bits (60), Expect = 2.1
Identities = 12/38 (31%), Positives = 27/38 (70%), Gaps = 7/38 (18%)
Query: 48 EEIISQRLQDYAQSQA-------NNLHNLIAQLFQDLE 78
E++I+QR++++A++QA +NL+ + A+ F++ E
Sbjct: 53 EQLINQRIEEFARNQAISRLEGLSNLYQIYAESFREWE 90
>pdb|1ATT|A Chain A, Antithrombin Iii (Atiii) (Synchrotron Radiation)
Length = 421
Score = 27.3 bits (59), Expect = 2.8
Identities = 20/74 (27%), Positives = 37/74 (49%), Gaps = 4/74 (5%)
Query: 5 MAEFNQRLPPDAFNS-VDKSEESLLFLSNMGAIKERLEKAASRKEEIISQRLQDYAQSQA 63
+A+ Q L PD +D+ E+LL + + R+E + S KE++ L+D +
Sbjct: 284 LAKVEQELTPDMLQEWLDELTETLLVVHMP---RFRIEDSFSVKEQLQDMGLEDLFSPEK 340
Query: 64 NNLHNLIAQLFQDL 77
+ L ++A+ DL
Sbjct: 341 SRLPGIVAEGRSDL 354
>pdb|1ATT|B Chain B, Antithrombin Iii (Atiii) (Synchrotron Radiation)
Length = 411
Score = 27.3 bits (59), Expect = 2.8
Identities = 20/74 (27%), Positives = 37/74 (49%), Gaps = 4/74 (5%)
Query: 5 MAEFNQRLPPDAFNS-VDKSEESLLFLSNMGAIKERLEKAASRKEEIISQRLQDYAQSQA 63
+A+ Q L PD +D+ E+LL + + R+E + S KE++ L+D +
Sbjct: 271 LAKVEQELTPDMLQEWLDELTETLLVVHMP---RFRIEDSFSVKEQLQDMGLEDLFSPEK 327
Query: 64 NNLHNLIAQLFQDL 77
+ L ++A+ DL
Sbjct: 328 SRLPGIVAEGRSDL 341
>pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin (Gimc)
Length = 133
Score = 26.9 bits (58), Expect = 3.6
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 29/125 (23%)
Query: 248 QKSVMAVLDSIEFKEFDYTDKLPSEIRGKTG-----------FLKGDEADA--FIQSVGN 294
Q+ + AV +I E + +K S+I+GK G F+K + D I SVG
Sbjct: 21 QQQMEAVRATIS--ELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGA 78
Query: 295 YV---RNFESEAKKDVKGYIQGLREALERQNFASDTLQKLKENMQNLQNQVQNKEQSIAQ 351
V +NFE +A + +K ++N TLQK+ EN++ + + + +
Sbjct: 79 GVAIKKNFE-DAMESIKS----------QKNELESTLQKMGENLRAITDIMMKLSPQAEE 127
Query: 352 LDAQI 356
L A +
Sbjct: 128 LLAAV 132
>pdb|1AKW| G61l Oxidized Flavodoxin Mutant
Length = 147
Score = 26.6 bits (57), Expect = 4.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 177 DAGYDEVSRTRATIKAGAVLDYLTEMHERCENALNDSAD 215
DAGY+ SR A+++AG + + + C L+DS +
Sbjct: 27 DAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWLDDSIE 65
>pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
Length = 1295
Score = 26.2 bits (56), Expect = 6.2
Identities = 13/44 (29%), Positives = 22/44 (49%)
Query: 36 IKERLEKAASRKEEIISQRLQDYAQSQANNLHNLIAQLFQDLED 79
+KE LE A + II+ + Y + + NN++ I L L +
Sbjct: 731 MKEALENQAEATKAIINYQYNQYTEEEKNNINFNIDDLSSKLNE 774
>pdb|1DP4|C Chain C, Dimerized Hormone Binding Domain Of The Atrial Natriuretic
Peptide Receptor
pdb|1DP4|A Chain A, Dimerized Hormone Binding Domain Of The Atrial Natriuretic
Peptide Receptor
Length = 435
Score = 26.2 bits (56), Expect = 6.2
Identities = 14/44 (31%), Positives = 21/44 (46%)
Query: 127 DGLNETLTKAIQKASALAREEEEEERYTERVKQGGLFGSFKRNF 170
DG + + +A Q A + +E + Y E +KQ L K NF
Sbjct: 264 DGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNF 307
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.132 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,873,668
Number of Sequences: 13198
Number of extensions: 74472
Number of successful extensions: 249
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 15
length of query: 363
length of database: 2,899,336
effective HSP length: 89
effective length of query: 274
effective length of database: 1,724,714
effective search space: 472571636
effective search space used: 472571636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)