BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645581|ref|NP_207757.1| hypothetical protein
[Helicobacter pylori 26695]
(443 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GGQ|A Chain A, Outer Surface Protein C (Ospc) Of Borre... 33 0.084
pdb|1LNR|N Chain N, Crystal Structure Of The Large Ribosoma... 32 0.19
pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonucle... 29 1.2
pdb|1EV9|A Chain A, Rat Glutathione S-Transferase A1-1 Muta... 28 2.7
pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase >gi|4699608|pdb|1... 28 2.7
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved... 28 2.7
pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal ... 28 2.7
pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal ... 28 2.7
pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton He... 27 3.5
pdb|1EV4|A Chain A, Rat Glutathione S-Transferase A1-1: Mut... 27 4.6
pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton He... 27 4.6
pdb|1F3B|A Chain A, Crystal Structure Of Mgsta1-1 In Comple... 27 4.6
pdb|1BLJ| Nmr Ensemble Of Blk Sh2 Domain, 20 Structures >... 27 4.6
pdb|1QDS|A Chain A, Superstable E65q Mutant Of Leishmania M... 27 6.0
pdb|1AMK| Leishmania Mexicana Triose Phosphate Isomerase 27 6.0
pdb|1F3A|A Chain A, Crystal Structure Of Mgsta1-1 In Comple... 26 7.9
>pdb|1GGQ|A Chain A, Outer Surface Protein C (Ospc) Of Borrelia Burgdorferi
Strain B31
pdb|1GGQ|B Chain B, Outer Surface Protein C (Ospc) Of Borrelia Burgdorferi
Strain B31
pdb|1GGQ|C Chain C, Outer Surface Protein C (Ospc) Of Borrelia Burgdorferi
Strain B31
pdb|1GGQ|D Chain D, Outer Surface Protein C (Ospc) Of Borrelia Burgdorferi
Strain B31
Length = 174
Score = 32.7 bits (73), Expect = 0.084
Identities = 34/101 (33%), Positives = 45/101 (43%), Gaps = 12/101 (11%)
Query: 17 LQEQGLQER--AGPFISENAVIKTEELEKTLKEMQAEDRDLKVGII---GRVKAGKSSLL 71
L+ +GL+E+ A SE K +E L + D D K I+ G G L
Sbjct: 79 LKNEGLKEKIDAAKKCSETFTNKLKEKHTDLGKEGVTDADAKEAILKTNGTKTKGAEEL- 137
Query: 72 NALIFEGVEVLPKAATPMTASLTILKYAKTLSAEVEFYSPK 112
+FE VEVL KAA M A+ K L++ V SPK
Sbjct: 138 -GKLFESVEVLSKAAKEMLAN-----SVKELTSPVVAESPK 172
>pdb|1LNR|N Chain N, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
Length = 166
Score = 31.6 bits (70), Expect = 0.19
Identities = 18/70 (25%), Positives = 40/70 (56%), Gaps = 5/70 (7%)
Query: 77 EGVEVLPKAATPMTASLTILKYAKTLSAEVEFYSPKDILELKNEHARYEREFNRIVDEEV 136
EGVE + A+P+ +TI++ K A++ + + EL+ + AR + + +R++ +
Sbjct: 75 EGVERVFPFASPLVNQVTIVERGKVRRAKLYY-----LRELRGKAARIKSDRSRVMKDAA 129
Query: 137 KRQKEKQSLS 146
+ Q++K + S
Sbjct: 130 RAQQDKANAS 139
>pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
pdb|1EKE|A Chain A, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
Length = 230
Score = 28.9 bits (63), Expect = 1.2
Identities = 37/139 (26%), Positives = 59/139 (41%), Gaps = 23/139 (16%)
Query: 135 EVKRQKEKQSLSNR-AKEGFKNVSKWLGKNKSTEAAPKERVLSDEEIN------------ 181
E +R++E + L + +KE KN +L K ++R+L EEIN
Sbjct: 26 EKEREEELKKLGVKDSKELTKNKRAYLKKLLENLGYVEKRILEAEEINQLXNSINLNDIE 85
Query: 182 -NRAERIAKSELEKDTKLVSSHDQYERMKKSGSLNTENLDSHIQAN-----SLQELNQKL 235
N ++AK+ +E KL D+ E + S NT+ + + + LN K+
Sbjct: 86 INAFSKVAKNLIE---KLNIRDDEIEIYIDACSTNTKKFEDSFKDKIEDIIKERNLNIKI 142
Query: 236 LQFVGADRKYMPYTKAVQI 254
+ AD KY P A I
Sbjct: 143 IAEHKADAKY-PVVSAASI 160
>pdb|1EV9|A Chain A, Rat Glutathione S-Transferase A1-1 Mutant W21f With Gso3
Bound
pdb|1EV9|D Chain D, Rat Glutathione S-Transferase A1-1 Mutant W21f With Gso3
Bound
pdb|1EV9|C Chain C, Rat Glutathione S-Transferase A1-1 Mutant W21f With Gso3
Bound
Length = 221
Score = 27.7 bits (60), Expect = 2.7
Identities = 46/210 (21%), Positives = 89/210 (41%), Gaps = 26/210 (12%)
Query: 187 IAKSELEKDTKLVSSHDQYERMKKSGSLNTENLDS-HIQANSLQELNQKLLQFVGADRKY 245
+A + +E D K + S + E++KK G+L + + I L + + +L ++ KY
Sbjct: 22 LAAAGVEFDEKFIQSPEDLEKLKKDGNLMFDQVPMVEIDGMKLAQ-TRAILNYIAT--KY 78
Query: 246 MPYTKAVQ----ISLNNPNLKDLEVIDTPGVNDPIASREERTKALLKDCDVVFIISSSNQ 301
Y K ++ I + + + DL + V P +E +T AL KD + N+
Sbjct: 79 DLYGKDMKERALIDMYSEGILDLTEMIMQLVICPPDQKEAKT-ALAKD-------RTKNR 130
Query: 302 FLTESDMSLFDR-----VSNKES-----LQEIYFVASQADSAVLSMSEVEKSRHHLPTAL 351
+L + L V NK + L E+ + D+++L+ + K+ ++L
Sbjct: 131 YLPAFEKVLKSHGQDYLVGNKLTRVDIHLLELLLYVEEFDASLLTSFPLLKAFKSRISSL 190
Query: 352 ENAQKSLSSSLNKTMEALIQTNPNQRGIFE 381
N +K L + + + R IF+
Sbjct: 191 PNVKKFLQPGSQRKLPMDAKQIEEARKIFK 220
>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase
pdb|1DCI|B Chain B, Dienoyl-Coa Isomerase
pdb|1DCI|C Chain C, Dienoyl-Coa Isomerase
Length = 275
Score = 27.7 bits (60), Expect = 2.7
Identities = 22/85 (25%), Positives = 38/85 (43%), Gaps = 3/85 (3%)
Query: 21 GLQERAGPFISENAVIKTEELEKTLKEMQAEDRDLKVGIIGRVKAGKSSLLNALIFEGVE 80
G +R I +++ EL T ++M A D L G++ RV K +LNA +
Sbjct: 154 GTLQRLPKVIGNRSLVN--ELTFTARKMMA-DEALDSGLVSRVFPDKDVMLNAAFALAAD 210
Query: 81 VLPKAATPMTASLTILKYAKTLSAE 105
+ K+ + S L Y++ S +
Sbjct: 211 ISSKSPVAVQGSKINLIYSRDHSVD 235
>pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
Length = 301
Score = 27.7 bits (60), Expect = 2.7
Identities = 11/30 (36%), Positives = 19/30 (62%)
Query: 57 VGIIGRVKAGKSSLLNALIFEGVEVLPKAA 86
+ I+GR GKS+LLN L+ + + + + A
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKA 40
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 27.7 bits (60), Expect = 2.7
Identities = 12/38 (31%), Positives = 26/38 (67%)
Query: 45 LKEMQAEDRDLKVGIIGRVKAGKSSLLNALIFEGVEVL 82
LK+M+ ++R+L++ ++G AGK+++L E V+ +
Sbjct: 9 LKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTI 46
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 27.7 bits (60), Expect = 2.7
Identities = 12/38 (31%), Positives = 26/38 (67%)
Query: 45 LKEMQAEDRDLKVGIIGRVKAGKSSLLNALIFEGVEVL 82
LK+M+ ++R+L++ ++G AGK+++L E V+ +
Sbjct: 9 LKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTI 46
>pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 27.3 bits (59), Expect = 3.5
Identities = 14/44 (31%), Positives = 26/44 (58%)
Query: 324 YFVASQADSAVLSMSEVEKSRHHLPTALENAQKSLSSSLNKTME 367
+F+A + +SE +++ L TA E A+++LSSS ++E
Sbjct: 237 HFIAEFKRAHAKDISENKRAVRRLATACERAKRTLSSSTQASIE 280
>pdb|1EV4|A Chain A, Rat Glutathione S-Transferase A1-1: Mutant W21fF220Y WITH
Gso3 Bound
pdb|1EV4|D Chain D, Rat Glutathione S-Transferase A1-1: Mutant W21fF220Y WITH
Gso3 Bound
pdb|1EV4|C Chain C, Rat Glutathione S-Transferase A1-1: Mutant W21fF220Y WITH
Gso3 Bound
Length = 221
Score = 26.9 bits (58), Expect = 4.6
Identities = 43/187 (22%), Positives = 82/187 (42%), Gaps = 26/187 (13%)
Query: 187 IAKSELEKDTKLVSSHDQYERMKKSGSLNTENLDS-HIQANSLQELNQKLLQFVGADRKY 245
+A + +E D K + S + E++KK G+L + + I L + + +L ++ KY
Sbjct: 22 LAAAGVEFDEKFIQSPEDLEKLKKDGNLMFDQVPMVEIDGMKLAQ-TRAILNYIAT--KY 78
Query: 246 MPYTKAVQ----ISLNNPNLKDLEVIDTPGVNDPIASREERTKALLKDCDVVFIISSSNQ 301
Y K ++ I + + + DL + V P +E +T AL KD + N+
Sbjct: 79 DLYGKDMKERALIDMYSEGILDLTEMIMQLVICPPDQKEAKT-ALAKD-------RTKNR 130
Query: 302 FLTESDMSLFDR-----VSNKES-----LQEIYFVASQADSAVLSMSEVEKSRHHLPTAL 351
+L + L V NK + L E+ + D+++L+ + K+ ++L
Sbjct: 131 YLPAFEKVLKSHGQDYLVGNKLTRVDIHLLELLLYVEEFDASLLTSFPLLKAFKSRISSL 190
Query: 352 ENAQKSL 358
N +K L
Sbjct: 191 PNVKKFL 197
>pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 26.9 bits (58), Expect = 4.6
Identities = 14/44 (31%), Positives = 26/44 (58%)
Query: 324 YFVASQADSAVLSMSEVEKSRHHLPTALENAQKSLSSSLNKTME 367
+F+A + +SE +++ L TA E A+++LSSS ++E
Sbjct: 237 HFIAEFKRAHAKDISENKRAVRRLRTACERAKRTLSSSTQASIE 280
>pdb|1F3B|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With Glutathione
Conjugate Of Benzo[a]pyrene Epoxide
pdb|1F3B|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With Glutathione
Conjugate Of Benzo[a]pyrene Epoxide
Length = 222
Score = 26.9 bits (58), Expect = 4.6
Identities = 40/180 (22%), Positives = 82/180 (45%), Gaps = 12/180 (6%)
Query: 187 IAKSELEKDTKLVSSHDQYERMKKSGSLNTENLDS-HIQANSLQELNQKLLQFVGADRKY 245
+A + +E + K + S + E++KK G+L + + I L + + +L ++ KY
Sbjct: 22 LAAAGVEFEEKFIQSPEDLEKLKKDGNLMFDQVPMVEIDGMKLAQ-TRAILNYIAT--KY 78
Query: 246 MPYTKAVQ----ISLNNPNLKDLEVIDTPGVNDPIASREERTKALLKDCDVVFIISSSNQ 301
Y K ++ I + + + DL + V P RE +T AL KD + + +
Sbjct: 79 DLYGKDMKERALIDMYSEGILDLTEMIGQLVLXPPDQREAKT-ALAKDRTKNRYLPAFEK 137
Query: 302 FLTE--SDMSLFDRVSNKE-SLQEIYFVASQADSAVLSMSEVEKSRHHLPTALENAQKSL 358
L D + +R++ + L E+ + D+++L+ + K+ ++L N +K L
Sbjct: 138 VLKSHGQDYLVGNRLTRVDIHLLEVLLYVEEFDASLLTPFPLLKAFKSRISSLPNVKKFL 197
>pdb|1BLJ| Nmr Ensemble Of Blk Sh2 Domain, 20 Structures
pdb|1BLK| Nmr Ensemble Of Blk Sh2 Domain Using Chemical Shift Refinement, 20
Structures
Length = 114
Score = 26.9 bits (58), Expect = 4.6
Identities = 14/49 (28%), Positives = 27/49 (54%), Gaps = 2/49 (4%)
Query: 352 ENAQKSLSSSLNKTMEALIQTNPNQRGIFEKAIKNGVILTSGACFSMYK 400
++A++ L + +NK LI+ + + +G F ++K+ I T G YK
Sbjct: 22 KDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKD--ITTQGEVVKHYK 68
>pdb|1QDS|A Chain A, Superstable E65q Mutant Of Leishmania Mexicana
Triosephosphate Isomerase (Tim)
pdb|1IF2|A Chain A, X-Ray Structure Of Leishmania Mexicana Triosephosphate
Isomerase Complexed With Ipp
Length = 251
Score = 26.6 bits (57), Expect = 6.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 142 KQSLSNRAKEGFKNVSKWLGKNKSTEAAPKERVLSDEEIN--NRAERIAKSEL 192
K + +A+E + KW+ +N T+ A K R+L +N N A AK ++
Sbjct: 177 KVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDI 229
>pdb|1AMK| Leishmania Mexicana Triose Phosphate Isomerase
Length = 251
Score = 26.6 bits (57), Expect = 6.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 142 KQSLSNRAKEGFKNVSKWLGKNKSTEAAPKERVLSDEEIN--NRAERIAKSEL 192
K + +A+E + KW+ +N T+ A K R+L +N N A AK ++
Sbjct: 177 KVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDI 229
>pdb|1F3A|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With Gsh
pdb|1F3A|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With Gsh
Length = 222
Score = 26.2 bits (56), Expect = 7.9
Identities = 40/180 (22%), Positives = 82/180 (45%), Gaps = 12/180 (6%)
Query: 187 IAKSELEKDTKLVSSHDQYERMKKSGSLNTENLDS-HIQANSLQELNQKLLQFVGADRKY 245
+A + +E + K + S + E++KK G+L + + I L + + +L ++ KY
Sbjct: 22 LAAAGVEFEEKFIQSPEDLEKLKKDGNLMFDQVPMVEIDGMKLAQ-TRAILNYIAT--KY 78
Query: 246 MPYTKAVQ----ISLNNPNLKDLEVIDTPGVNDPIASREERTKALLKDCDVVFIISSSNQ 301
Y K ++ I + + + DL + V P RE +T AL KD + + +
Sbjct: 79 DLYGKDMKERALIDMYSEGILDLTEMIGQLVLCPPDQREAKT-ALAKDRTKNRYLPAFEK 137
Query: 302 FLTE--SDMSLFDRVSNKE-SLQEIYFVASQADSAVLSMSEVEKSRHHLPTALENAQKSL 358
L D + +R++ + L E+ + D+++L+ + K+ ++L N +K L
Sbjct: 138 VLKSHGQDYLVGNRLTRVDIHLLEVLLYVEEFDASLLTPFPLLKAFKSRISSLPNVKKFL 197
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.310 0.126 0.335
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,227,447
Number of Sequences: 13198
Number of extensions: 84454
Number of successful extensions: 279
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 16
length of query: 443
length of database: 2,899,336
effective HSP length: 91
effective length of query: 352
effective length of database: 1,698,318
effective search space: 597807936
effective search space used: 597807936
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)