BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645586|ref|NP_207762.1| hypothetical protein
[Helicobacter pylori 26695]
(413 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JX4|A Chain A, Crystal Structure Of A Y-Family Dna Pol... 30 0.50
pdb|1JXL|A Chain A, Crystal Structure Of A Y-Family Dna Pol... 30 0.65
pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine ... 29 0.85
pdb|1G86|A Chain A, Charcot-Leyden Crystal ProteinN-Ethylma... 28 1.4
pdb|1HDK|A Chain A, Charcot-Leyden Crystal Protein - Pcmbs ... 28 1.4
pdb|1QKN|A Chain A, Rat Oestrogen Receptor Beta Ligand-Bind... 27 5.5
pdb|1JQD|A Chain A, Crystal Structure Analysis Of Human His... 27 5.5
pdb|1EK8|A Chain A, Crystal Structure Of The Ribosome Recyc... 27 5.5
pdb|1JQE|A Chain A, Crystal Structure Analysis Of Human His... 27 5.5
>pdb|1JX4|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A
Ternary Complex With Dna Substrates And An Incoming
Nucleotide
Length = 352
Score = 30.0 bits (66), Expect = 0.50
Identities = 22/110 (20%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 87 SSLLSKSLSIKTIQYD-KSYQLNKNLAFIGAKRLYLTYVMTKEKYQVYVQREANFYSQLK 145
S S ++ T Y+ + + + + + AK++ V + +VY Q + + L+
Sbjct: 34 SGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPXRKEVYQQVSSRIXNLLR 93
Query: 146 IAKEKVKAGSMSEKDYINFNN---SYLESKLAKTNVETKLIDLEKMLDTM 192
EK++ S+ E Y++ ++ Y E+ ++ K+++ EK+ T+
Sbjct: 94 EYSEKIEIASIDEA-YLDISDKVRDYREAYNLGLEIKNKILEKEKITVTV 142
>pdb|1JXL|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A
Ternary Complex With Dna Substrates And An Incoming
Nucleotide
Length = 352
Score = 29.6 bits (65), Expect = 0.65
Identities = 22/110 (20%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 87 SSLLSKSLSIKTIQYD-KSYQLNKNLAFIGAKRLYLTYVMTKEKYQVYVQREANFYSQLK 145
S S ++ T Y+ + + + + + AK++ V + +VY Q + + L+
Sbjct: 34 SGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLR 93
Query: 146 IAKEKVKAGSMSEKDYINFNN---SYLESKLAKTNVETKLIDLEKMLDTM 192
EK++ S+ E Y++ ++ Y E+ ++ K+++ EK+ T+
Sbjct: 94 EYSEKIEIASIDEA-YLDISDKVRDYREAYNLGLEIKNKILEKEKITVTV 142
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 29.3 bits (64), Expect = 0.85
Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 16/186 (8%)
Query: 121 LTYVMTKEKYQVYVQREANFYSQLKIAKEKVKAGSMSEKDYINFNNSYLESKLAKTNVET 180
LT++ Q V + + Q +A + +K GSMSE ++I E+K+
Sbjct: 6 LTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIE------EAKVMMNLSHE 59
Query: 181 KLIDLEKMLD---TMLAIVEPVKEGAHFDTYLDHLHDVKVIGLDFEYVRLEPEALKFKLD 237
KL+ L + + I E + G + + H + L E + EA+++ L+
Sbjct: 60 KLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQL-LEMCKDVCEAMEY-LE 117
Query: 238 RSLYVDILDLTAKDYQVNAKLANRDVFNAFEFGIGSESYNSSTNLSVEVRIPLPVTPKNI 297
++ DL A++ VN ++ V +FG+ + SV + P+ +P +
Sbjct: 118 SKQFLH-RDLAARNCLVN----DQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEV 172
Query: 298 YQKRKF 303
KF
Sbjct: 173 LMYSKF 178
>pdb|1G86|A Chain A, Charcot-Leyden Crystal ProteinN-Ethylmaleimide Complex
pdb|1QKQ|A Chain A, Charcot-Leyden Crystal Protein - Mannose Complex
pdb|1LCL| Charcot-Leyden Crystal Protein
Length = 142
Score = 28.5 bits (62), Expect = 1.4
Identities = 18/64 (28%), Positives = 32/64 (49%), Gaps = 1/64 (1%)
Query: 108 NKNLAFIGAKRLYLTYVMTKEKYQVYVQREANFYSQLKIAKEKVKAGSM-SEKDYINFNN 166
+KN+ F + L+ + +KYQV V ++++ +I E VK + + FN
Sbjct: 78 SKNMPFQDGQEFELSISVLPDKYQVMVNGQSSYTFDHRIKPEAVKMVQVWRDISLTKFNV 137
Query: 167 SYLE 170
SYL+
Sbjct: 138 SYLK 141
>pdb|1HDK|A Chain A, Charcot-Leyden Crystal Protein - Pcmbs Complex
Length = 141
Score = 28.5 bits (62), Expect = 1.4
Identities = 18/64 (28%), Positives = 32/64 (49%), Gaps = 1/64 (1%)
Query: 108 NKNLAFIGAKRLYLTYVMTKEKYQVYVQREANFYSQLKIAKEKVKAGSM-SEKDYINFNN 166
+KN+ F + L+ + +KYQV V ++++ +I E VK + + FN
Sbjct: 77 SKNMPFQDGQEFELSISVLPDKYQVMVNGQSSYTFDHRIKPEAVKMVQVWRDISLTKFNV 136
Query: 167 SYLE 170
SYL+
Sbjct: 137 SYLK 140
>pdb|1QKN|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Antagonist Raloxifene
pdb|1HJ1|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Pure Antioestrogen Ici164,384
Length = 255
Score = 26.6 bits (57), Expect = 5.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 68 IIEAQPRTLLVVRPKLPWVSSLLSKSLS 95
++EA+P +LV RP +P+ + + SL+
Sbjct: 18 LLEAEPPNVLVSRPSMPFTEASMMMSLT 45
>pdb|1JQD|A Chain A, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Thr105 Polymorphic Variant) Complexed
With Adohcy And Histamine
pdb|1JQD|B Chain B, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Thr105 Polymorphic Variant) Complexed
With Adohcy And Histamine
Length = 292
Score = 26.6 bits (57), Expect = 5.5
Identities = 11/52 (21%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 35 ADFKSRLNEQRSVNAWDF-------PYIENETSMVKNFQGIIEAQPRTLLVV 79
++++SR+ E++ + WDF Y+++ + +K F ++ + L++V
Sbjct: 121 SEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV 172
>pdb|1EK8|A Chain A, Crystal Structure Of The Ribosome Recycling Factor (Rrf)
From Escherichia Coli
Length = 185
Score = 26.6 bits (57), Expect = 5.5
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 285 EVRIPLPVTPKNIYQKRKFLDLQSGTLAQNEVMKRNIRINANSYLNQ-LKTKE 336
++R+PLP P +++ + G Q V RN+R +AN + LK KE
Sbjct: 97 DIRVPLP--PLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKE 147
>pdb|1JQE|A Chain A, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Ile105 Polymorphic Variant) Complexed
With Adohcy And Antimalarial Drug Quinacrine
pdb|1JQE|B Chain B, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Ile105 Polymorphic Variant) Complexed
With Adohcy And Antimalarial Drug Quinacrine
Length = 292
Score = 26.6 bits (57), Expect = 5.5
Identities = 11/52 (21%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 35 ADFKSRLNEQRSVNAWDF-------PYIENETSMVKNFQGIIEAQPRTLLVV 79
++++SR+ E++ + WDF Y+++ + +K F ++ + L++V
Sbjct: 121 SEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV 172
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.134 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,057,172
Number of Sequences: 13198
Number of extensions: 82097
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 9
length of query: 413
length of database: 2,899,336
effective HSP length: 91
effective length of query: 322
effective length of database: 1,698,318
effective search space: 546858396
effective search space used: 546858396
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)